HEADER ISOMERASE 27-JUN-12 4FS9 TITLE COMPLEX STRUCTURE OF A BROAD SPECIFICITY AMINO ACID RACEMASE (BAR) TITLE 2 WITHIN THE REACTIVE INTERMEDIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROAD SPECIFICITY AMINO ACID RACEMASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BAR; COMPND 5 EC: 5.1.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 STRAIN: DSM84; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ISOMERASE, PLP BINDING, RACEMIZATION EXPDTA X-RAY DIFFRACTION AUTHOR W.C.WANG,H.M.WU REVDAT 2 08-NOV-23 4FS9 1 REMARK REVDAT 1 06-MAR-13 4FS9 0 JRNL AUTH H.M.WU,Y.C.KUAN,C.H.CHU,W.H.HSU,W.C.WANG JRNL TITL CRYSTAL STRUCTURES OF LYSINE-PREFERRED RACEMASES, THE JRNL TITL 2 NON-ANTIBIOTIC SELECTABLE MARKERS FOR TRANSGENIC PLANTS JRNL REF PLOS ONE V. 7 48301 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 23118975 JRNL DOI 10.1371/JOURNAL.PONE.0048301 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 20576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1072 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1292 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5840 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.55000 REMARK 3 B22 (A**2) : -7.22000 REMARK 3 B33 (A**2) : 10.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.91000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.374 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.271 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.631 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5988 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8110 ; 1.376 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 766 ; 7.819 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 264 ;39.156 ;23.864 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1002 ;23.182 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;21.726 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 928 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4492 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3806 ; 1.018 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6080 ; 1.762 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2182 ; 1.004 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2030 ; 1.647 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 26 A 409 4 REMARK 3 1 B 26 B 409 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2920 ; 0.33 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2920 ; 1.00 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FS9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : FIXED-EXIT DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21656 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4DYJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE (PH9.0), 0.1M NACL, 20% REMARK 280 PEG-MME 550, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.20900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.05450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.20900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 59.05450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 630 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 PHE A 3 REMARK 465 ARG A 4 REMARK 465 ARG A 5 REMARK 465 THR A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 LEU A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 LEU A 15 REMARK 465 ILE A 16 REMARK 465 THR A 17 REMARK 465 GLY A 18 REMARK 465 GLN A 19 REMARK 465 ALA A 20 REMARK 465 PRO A 21 REMARK 465 LEU A 22 REMARK 465 TYR A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 PHE B 3 REMARK 465 ARG B 4 REMARK 465 ARG B 5 REMARK 465 THR B 6 REMARK 465 LEU B 7 REMARK 465 LEU B 8 REMARK 465 ALA B 9 REMARK 465 ALA B 10 REMARK 465 SER B 11 REMARK 465 LEU B 12 REMARK 465 ALA B 13 REMARK 465 LEU B 14 REMARK 465 LEU B 15 REMARK 465 ILE B 16 REMARK 465 THR B 17 REMARK 465 GLY B 18 REMARK 465 GLN B 19 REMARK 465 ALA B 20 REMARK 465 PRO B 21 REMARK 465 LEU B 22 REMARK 465 TYR B 23 REMARK 465 ALA B 24 REMARK 465 ALA B 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 53 -72.18 -34.22 REMARK 500 ALA A 65 26.16 83.16 REMARK 500 ALA A 78 47.58 70.19 REMARK 500 PRO A 88 -59.04 -28.86 REMARK 500 GLN A 93 36.59 -80.54 REMARK 500 ALA A 101 -52.07 -126.62 REMARK 500 PHE A 114 92.07 -68.29 REMARK 500 SER A 143 144.87 -173.40 REMARK 500 ASN A 168 28.82 -75.99 REMARK 500 ARG A 174 -74.40 -134.37 REMARK 500 VAL A 200 -2.96 -145.97 REMARK 500 SER A 246 -75.11 -51.08 REMARK 500 VAL A 252 64.32 -111.88 REMARK 500 LEU A 257 -142.01 51.53 REMARK 500 VAL A 271 110.08 -18.81 REMARK 500 ALA A 289 158.66 175.51 REMARK 500 ALA A 295 127.56 -32.66 REMARK 500 ARG A 309 -131.52 -105.04 REMARK 500 TYR A 324 97.79 -62.34 REMARK 500 ASN A 330 26.51 42.52 REMARK 500 SER A 348 174.54 -58.36 REMARK 500 THR A 357 -9.34 -45.78 REMARK 500 ASN A 366 -169.67 -64.12 REMARK 500 ALA A 375 93.67 10.32 REMARK 500 LEU A 391 166.03 -49.73 REMARK 500 LEU B 53 -71.30 -59.16 REMARK 500 LEU B 60 -71.48 -45.22 REMARK 500 GLN B 61 -39.44 -30.26 REMARK 500 ALA B 65 17.99 86.65 REMARK 500 SER B 68 121.27 179.35 REMARK 500 ALA B 78 61.74 63.51 REMARK 500 ASN B 168 49.64 -89.98 REMARK 500 SER B 173 64.61 60.79 REMARK 500 ARG B 174 -57.48 -144.48 REMARK 500 GLU B 209 88.87 -69.67 REMARK 500 LYS B 230 -79.90 -60.32 REMARK 500 LYS B 233 73.96 59.13 REMARK 500 ASN B 245 -160.25 -69.34 REMARK 500 SER B 246 -76.31 -61.81 REMARK 500 LEU B 257 -147.81 39.85 REMARK 500 THR B 270 -154.94 -147.89 REMARK 500 ARG B 303 18.20 48.18 REMARK 500 THR B 304 -25.56 -36.45 REMARK 500 THR B 317 47.62 -77.13 REMARK 500 TYR B 324 90.75 -67.65 REMARK 500 LYS B 331 -38.81 -131.63 REMARK 500 ALA B 375 87.28 -8.20 REMARK 500 GLU B 386 -61.13 -27.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE1 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE1 B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DYJ RELATED DB: PDB REMARK 900 APO FORM OF BAR REMARK 900 RELATED ID: 4DZA RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. DBREF 4FS9 A 1 409 PDB 4FS9 4FS9 1 409 DBREF 4FS9 B 1 409 PDB 4FS9 4FS9 1 409 SEQRES 1 A 409 MET PRO PHE ARG ARG THR LEU LEU ALA ALA SER LEU ALA SEQRES 2 A 409 LEU LEU ILE THR GLY GLN ALA PRO LEU TYR ALA ALA PRO SEQRES 3 A 409 PRO LEU SER MET ASP ASN GLY THR ASN ALA LEU THR VAL SEQRES 4 A 409 GLN ASN SER ASN ALA TRP VAL GLU VAL SER ALA SER ALA SEQRES 5 A 409 LEU GLN HIS ASN ILE ARG THR LEU GLN ALA GLU LEU ALA SEQRES 6 A 409 GLY LYS SER ARG LEU CYS ALA VAL LEU LYS ALA ASP ALA SEQRES 7 A 409 TYR GLY HIS GLY ILE GLY LEU VAL MET PRO SER ILE ILE SEQRES 8 A 409 ALA GLN GLY VAL PRO CYS VAL ALA VAL ALA SER ASN GLU SEQRES 9 A 409 GLU ALA ARG VAL VAL ARG ALA SER GLY PHE THR GLY GLN SEQRES 10 A 409 LEU VAL ARG VAL ARG LEU ALA SER LEU SER GLU LEU GLU SEQRES 11 A 409 ASP ALA LEU GLN TYR ASP MET GLU GLU LEU VAL GLY SER SEQRES 12 A 409 ALA GLU PHE ALA ARG GLN VAL ASP ALA ILE ALA ALA ARG SEQRES 13 A 409 HIS GLY LYS THR LEU ARG ILE HIS MET ALA LEU ASN SER SEQRES 14 A 409 SER GLY MET SER ARG ASN GLY VAL GLU MET ALA THR TRP SEQRES 15 A 409 SER GLY ARG GLY GLU ALA LEU GLN ILE THR ASP GLN LYS SEQRES 16 A 409 HIS LEU LYS LEU VAL ALA LEU MET THR HIS PHE ALA VAL SEQRES 17 A 409 GLU ASP LYS ASP ASP VAL ARG LYS GLY LEU ALA ALA PHE SEQRES 18 A 409 ASN GLU GLN THR ASP TRP LEU ILE LYS HIS ALA LYS LEU SEQRES 19 A 409 ASP ARG SER LYS LEU THR LEU HIS ALA ALA ASN SER PHE SEQRES 20 A 409 ALA THR LEU GLU VAL PRO GLU ALA ARG LEU ASP MET VAL SEQRES 21 A 409 ARG THR GLY GLY ALA LEU PHE GLY ASP THR VAL PRO ALA SEQRES 22 A 409 ARG THR GLU TYR GLN ARG ALA MET GLN PHE LYS SER HIS SEQRES 23 A 409 VAL ALA ALA VAL HIS SER TYR PRO ALA GLY ASN THR VAL SEQRES 24 A 409 GLY TYR ASP ARG THR PHE THR LEU ALA ARG ASP SER ARG SEQRES 25 A 409 LEU ALA ASN ILE THR VAL GLY TYR SER ASP GLY TYR ARG SEQRES 26 A 409 ARG VAL PHE THR ASN LYS GLY HIS VAL LEU ILE ASN GLY SEQRES 27 A 409 HIS ARG ILE PRO VAL VAL GLY LYS VAL SER MET ASN THR SEQRES 28 A 409 LEU MET VAL ASP VAL THR ASP PHE PRO ASP VAL LYS GLY SEQRES 29 A 409 GLY ASN GLU VAL VAL LEU PHE GLY LYS GLN ALA GLY GLY SEQRES 30 A 409 GLU ILE THR GLN ALA GLU MET GLU GLU ILE ASN GLY ALA SEQRES 31 A 409 LEU LEU ALA ASP LEU TYR THR VAL TRP GLY SER SER ASN SEQRES 32 A 409 PRO LYS ILE LEU VAL ASP SEQRES 1 B 409 MET PRO PHE ARG ARG THR LEU LEU ALA ALA SER LEU ALA SEQRES 2 B 409 LEU LEU ILE THR GLY GLN ALA PRO LEU TYR ALA ALA PRO SEQRES 3 B 409 PRO LEU SER MET ASP ASN GLY THR ASN ALA LEU THR VAL SEQRES 4 B 409 GLN ASN SER ASN ALA TRP VAL GLU VAL SER ALA SER ALA SEQRES 5 B 409 LEU GLN HIS ASN ILE ARG THR LEU GLN ALA GLU LEU ALA SEQRES 6 B 409 GLY LYS SER ARG LEU CYS ALA VAL LEU LYS ALA ASP ALA SEQRES 7 B 409 TYR GLY HIS GLY ILE GLY LEU VAL MET PRO SER ILE ILE SEQRES 8 B 409 ALA GLN GLY VAL PRO CYS VAL ALA VAL ALA SER ASN GLU SEQRES 9 B 409 GLU ALA ARG VAL VAL ARG ALA SER GLY PHE THR GLY GLN SEQRES 10 B 409 LEU VAL ARG VAL ARG LEU ALA SER LEU SER GLU LEU GLU SEQRES 11 B 409 ASP ALA LEU GLN TYR ASP MET GLU GLU LEU VAL GLY SER SEQRES 12 B 409 ALA GLU PHE ALA ARG GLN VAL ASP ALA ILE ALA ALA ARG SEQRES 13 B 409 HIS GLY LYS THR LEU ARG ILE HIS MET ALA LEU ASN SER SEQRES 14 B 409 SER GLY MET SER ARG ASN GLY VAL GLU MET ALA THR TRP SEQRES 15 B 409 SER GLY ARG GLY GLU ALA LEU GLN ILE THR ASP GLN LYS SEQRES 16 B 409 HIS LEU LYS LEU VAL ALA LEU MET THR HIS PHE ALA VAL SEQRES 17 B 409 GLU ASP LYS ASP ASP VAL ARG LYS GLY LEU ALA ALA PHE SEQRES 18 B 409 ASN GLU GLN THR ASP TRP LEU ILE LYS HIS ALA LYS LEU SEQRES 19 B 409 ASP ARG SER LYS LEU THR LEU HIS ALA ALA ASN SER PHE SEQRES 20 B 409 ALA THR LEU GLU VAL PRO GLU ALA ARG LEU ASP MET VAL SEQRES 21 B 409 ARG THR GLY GLY ALA LEU PHE GLY ASP THR VAL PRO ALA SEQRES 22 B 409 ARG THR GLU TYR GLN ARG ALA MET GLN PHE LYS SER HIS SEQRES 23 B 409 VAL ALA ALA VAL HIS SER TYR PRO ALA GLY ASN THR VAL SEQRES 24 B 409 GLY TYR ASP ARG THR PHE THR LEU ALA ARG ASP SER ARG SEQRES 25 B 409 LEU ALA ASN ILE THR VAL GLY TYR SER ASP GLY TYR ARG SEQRES 26 B 409 ARG VAL PHE THR ASN LYS GLY HIS VAL LEU ILE ASN GLY SEQRES 27 B 409 HIS ARG ILE PRO VAL VAL GLY LYS VAL SER MET ASN THR SEQRES 28 B 409 LEU MET VAL ASP VAL THR ASP PHE PRO ASP VAL LYS GLY SEQRES 29 B 409 GLY ASN GLU VAL VAL LEU PHE GLY LYS GLN ALA GLY GLY SEQRES 30 B 409 GLU ILE THR GLN ALA GLU MET GLU GLU ILE ASN GLY ALA SEQRES 31 B 409 LEU LEU ALA ASP LEU TYR THR VAL TRP GLY SER SER ASN SEQRES 32 B 409 PRO LYS ILE LEU VAL ASP HET PE1 A 501 25 HET PE1 B 501 25 HETNAM PE1 N~2~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY) HETNAM 2 PE1 METHYL]PYRIDIN-4-YL}METHYL)-L-LYSINE HETSYN PE1 PYRIDOXYL-GLUTAMIC ACID-5'-MONOPHOSPHATE FORMUL 3 PE1 2(C14 H24 N3 O7 P) FORMUL 5 HOH *95(H2 O) HELIX 1 1 ALA A 50 ALA A 65 1 16 HELIX 2 2 LEU A 74 HIS A 81 1 8 HELIX 3 3 GLY A 82 GLN A 93 1 12 HELIX 4 4 SER A 102 ALA A 111 1 10 HELIX 5 5 SER A 125 LEU A 133 1 9 HELIX 6 6 GLN A 134 ASP A 136 5 3 HELIX 7 7 SER A 143 GLY A 158 1 16 HELIX 8 8 THR A 181 GLN A 194 1 14 HELIX 9 9 ASP A 210 ALA A 232 1 23 HELIX 10 10 ASP A 235 LEU A 239 5 5 HELIX 11 11 ASN A 245 VAL A 252 1 8 HELIX 12 12 PRO A 253 LEU A 257 5 5 HELIX 13 13 GLY A 263 GLY A 268 1 6 HELIX 14 14 GLY A 300 THR A 304 5 5 HELIX 15 15 ARG A 325 THR A 329 5 5 HELIX 16 16 THR A 380 GLY A 389 1 10 HELIX 17 17 LEU A 392 ASN A 403 1 12 HELIX 18 18 ALA B 50 ALA B 65 1 16 HELIX 19 19 LEU B 74 HIS B 81 1 8 HELIX 20 20 GLY B 82 GLN B 93 1 12 HELIX 21 21 SER B 102 SER B 112 1 11 HELIX 22 22 SER B 125 ALA B 132 1 8 HELIX 23 23 LEU B 133 ASP B 136 5 4 HELIX 24 24 SER B 143 GLY B 158 1 16 HELIX 25 25 THR B 181 ASP B 193 1 13 HELIX 26 26 ASP B 210 ALA B 232 1 23 HELIX 27 27 ASN B 245 VAL B 252 1 8 HELIX 28 28 PRO B 253 LEU B 257 5 5 HELIX 29 29 GLY B 263 GLY B 268 1 6 HELIX 30 30 GLY B 300 THR B 304 5 5 HELIX 31 31 GLY B 319 GLY B 323 5 5 HELIX 32 32 ARG B 325 THR B 329 5 5 HELIX 33 33 THR B 380 GLY B 389 1 10 HELIX 34 34 LEU B 392 ASN B 403 1 12 SHEET 1 A 2 SER A 29 MET A 30 0 SHEET 2 A 2 MET B 30 ASP B 31 -1 O MET B 30 N MET A 30 SHEET 1 B 5 HIS A 339 PRO A 342 0 SHEET 2 B 5 HIS A 333 ILE A 336 -1 N ILE A 336 O HIS A 339 SHEET 3 B 5 GLU A 367 GLN A 374 -1 O VAL A 369 N LEU A 335 SHEET 4 B 5 MET A 281 TYR A 293 -1 N PHE A 283 O PHE A 371 SHEET 5 B 5 GLY A 377 ILE A 379 0 SHEET 1 C 6 LEU A 352 ASP A 355 0 SHEET 2 C 6 SER A 311 ILE A 316 -1 N ALA A 314 O VAL A 354 SHEET 3 C 6 MET A 281 TYR A 293 -1 N ALA A 288 O ASN A 315 SHEET 4 C 6 GLU A 367 GLN A 374 -1 O PHE A 371 N PHE A 283 SHEET 5 C 6 ALA A 44 SER A 49 0 SHEET 6 C 6 LYS A 405 VAL A 408 1 O ILE A 406 N VAL A 46 SHEET 1 D 4 GLN A 117 ARG A 120 0 SHEET 2 D 4 CYS A 97 VAL A 100 1 N VAL A 100 O VAL A 119 SHEET 3 D 4 ARG A 69 VAL A 73 1 N ALA A 72 O CYS A 97 SHEET 4 D 4 MET A 259 THR A 262 1 O VAL A 260 N CYS A 71 SHEET 1 E 4 GLU A 139 VAL A 141 0 SHEET 2 E 4 LEU A 161 ALA A 166 1 O HIS A 164 N VAL A 141 SHEET 3 E 4 LEU A 197 MET A 203 1 O ALA A 201 N MET A 165 SHEET 4 E 4 THR A 240 LEU A 241 1 O THR A 240 N VAL A 200 SHEET 1 F 2 THR A 298 VAL A 299 0 SHEET 2 F 2 PHE A 305 THR A 306 -1 O PHE A 305 N VAL A 299 SHEET 1 G 5 HIS B 339 PRO B 342 0 SHEET 2 G 5 HIS B 333 ILE B 336 -1 N VAL B 334 O ILE B 341 SHEET 3 G 5 GLU B 367 GLN B 374 -1 O VAL B 369 N LEU B 335 SHEET 4 G 5 MET B 281 TYR B 293 -1 N PHE B 283 O PHE B 371 SHEET 5 G 5 GLY B 377 ILE B 379 0 SHEET 1 H 6 LEU B 352 ASP B 355 0 SHEET 2 H 6 SER B 311 ILE B 316 -1 N ILE B 316 O LEU B 352 SHEET 3 H 6 MET B 281 TYR B 293 -1 N ALA B 288 O ASN B 315 SHEET 4 H 6 GLU B 367 GLN B 374 -1 O PHE B 371 N PHE B 283 SHEET 5 H 6 ALA B 44 SER B 49 0 SHEET 6 H 6 LYS B 405 VAL B 408 1 O ILE B 406 N VAL B 46 SHEET 1 I 4 GLN B 117 ARG B 120 0 SHEET 2 I 4 CYS B 97 VAL B 100 1 N VAL B 98 O GLN B 117 SHEET 3 I 4 ARG B 69 VAL B 73 1 N ALA B 72 O ALA B 99 SHEET 4 I 4 MET B 259 THR B 262 1 O THR B 262 N VAL B 73 SHEET 1 J 4 GLU B 139 VAL B 141 0 SHEET 2 J 4 LEU B 161 ALA B 166 1 O ALA B 166 N VAL B 141 SHEET 3 J 4 LEU B 197 MET B 203 1 O LYS B 198 N ILE B 163 SHEET 4 J 4 THR B 240 HIS B 242 1 O HIS B 242 N LEU B 202 SHEET 1 K 2 THR B 298 VAL B 299 0 SHEET 2 K 2 PHE B 305 THR B 306 -1 O PHE B 305 N VAL B 299 SSBOND 1 CYS A 71 CYS A 97 1555 1555 2.06 SSBOND 2 CYS B 71 CYS B 97 1555 1555 2.04 SITE 1 AC1 16 LYS A 75 TYR A 79 VAL A 121 ARG A 174 SITE 2 AC1 16 HIS A 205 ASN A 245 SER A 246 ARG A 261 SITE 3 AC1 16 GLY A 263 GLY A 264 HOH A 627 HOH A 639 SITE 4 AC1 16 TYR B 301 TYR B 320 SER B 348 MET B 349 SITE 1 AC2 15 TYR A 301 TYR A 320 SER A 348 MET A 349 SITE 2 AC2 15 HOH A 624 LYS B 75 TYR B 79 ARG B 174 SITE 3 AC2 15 HIS B 205 ASN B 245 SER B 246 ARG B 261 SITE 4 AC2 15 THR B 262 GLY B 263 GLY B 264 CRYST1 142.418 118.109 74.024 90.00 99.87 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007022 0.000000 0.001221 0.00000 SCALE2 0.000000 0.008467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013712 0.00000