HEADER HYDROLASE 27-JUN-12 4FSB TITLE CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM-31 IN ITS OXIDIZED TITLE 2 FORM AT 1.88 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE VIM-31; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 31-266; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 3 ORGANISM_TAXID: 550; SOURCE 4 STRAIN: 11236; SOURCE 5 GENE: BLAVIM-31; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS METALLO-BETA-LACTAMASE SUPERFAMILY, BETA-LACTAM HYDROLYZING ENZYME, KEYWDS 2 ZINC BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.HERZOG,K.M.HOFFMANN REVDAT 6 06-DEC-23 4FSB 1 REMARK REVDAT 5 13-SEP-23 4FSB 1 REMARK SEQADV LINK REVDAT 4 01-JUL-15 4FSB 1 JRNL REVDAT 3 22-APR-15 4FSB 1 JRNL REVDAT 2 15-APR-15 4FSB 1 JRNL REVDAT 1 26-JUN-13 4FSB 0 JRNL AUTH M.B.KUPPER,K.HERZOG,S.BENNINK,P.SCHLOMER,P.BOGAERTS, JRNL AUTH 2 Y.GLUPCZYNSKI,R.FISCHER,C.BEBRONE,K.M.HOFFMANN JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF VIM-31 - A JRNL TITL 2 METALLO-BETA-LACTAMASE FROM ENTEROBACTER CLOACAE IN ITS JRNL TITL 3 NATIVE AND OXIDIZED FORM. JRNL REF FEBS J. V. 282 2352 2015 JRNL REFN ISSN 1742-464X JRNL PMID 25825035 JRNL DOI 10.1111/FEBS.13283 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 31694 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1685 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2193 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.1740 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3490 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 473 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.13000 REMARK 3 B22 (A**2) : -8.73000 REMARK 3 B33 (A**2) : -1.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.74000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.031 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.028 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.096 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3692 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2376 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5070 ; 1.077 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5803 ; 0.820 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 488 ; 6.180 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;32.609 ;23.642 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 534 ;12.350 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;20.197 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 579 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4283 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 755 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 32 263 B 32 263 8059 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): -4.904 8.837 -5.103 REMARK 3 T TENSOR REMARK 3 T11: 0.1565 T22: 0.0730 REMARK 3 T33: 0.0128 T12: -0.0098 REMARK 3 T13: 0.0176 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 1.5035 L22: 3.0397 REMARK 3 L33: 1.7643 L12: -1.8204 REMARK 3 L13: -0.3474 L23: -0.7656 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: -0.0072 S13: 0.0914 REMARK 3 S21: 0.3480 S22: 0.0326 S23: -0.0813 REMARK 3 S31: -0.5088 S32: -0.0214 S33: -0.0511 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): -12.2540 2.5200 -8.3790 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: 0.0842 REMARK 3 T33: 0.0335 T12: 0.0089 REMARK 3 T13: -0.0044 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.1155 L22: 0.5195 REMARK 3 L33: 0.1966 L12: -0.0013 REMARK 3 L13: 0.1510 L23: 0.0083 REMARK 3 S TENSOR REMARK 3 S11: -0.1149 S12: -0.1636 S13: 0.0747 REMARK 3 S21: 0.0009 S22: 0.0728 S23: -0.0674 REMARK 3 S31: -0.0223 S32: -0.0239 S33: 0.0420 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4790 -5.3720 -6.0680 REMARK 3 T TENSOR REMARK 3 T11: 0.0125 T22: 0.0765 REMARK 3 T33: 0.0304 T12: -0.0050 REMARK 3 T13: 0.0098 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.4571 L22: 0.5825 REMARK 3 L33: 0.6490 L12: -0.6863 REMARK 3 L13: -0.4220 L23: -0.0126 REMARK 3 S TENSOR REMARK 3 S11: -0.0541 S12: -0.1586 S13: -0.0625 REMARK 3 S21: -0.0041 S22: 0.0668 S23: -0.0208 REMARK 3 S31: 0.0127 S32: 0.0410 S33: -0.0128 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6360 -10.5610 -17.2730 REMARK 3 T TENSOR REMARK 3 T11: 0.0255 T22: 0.0346 REMARK 3 T33: 0.0574 T12: -0.0109 REMARK 3 T13: -0.0017 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.6364 L22: 0.3466 REMARK 3 L33: 0.8830 L12: -0.0284 REMARK 3 L13: 0.0069 L23: -0.5458 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: -0.0226 S13: -0.0595 REMARK 3 S21: -0.0357 S22: 0.0144 S23: -0.0020 REMARK 3 S31: 0.0526 S32: -0.0097 S33: -0.0236 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6620 -13.5490 -24.5840 REMARK 3 T TENSOR REMARK 3 T11: 0.0668 T22: 0.0189 REMARK 3 T33: 0.0527 T12: 0.0007 REMARK 3 T13: -0.0048 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 1.4333 L22: 1.4542 REMARK 3 L33: 0.8606 L12: 1.0584 REMARK 3 L13: -0.1781 L23: -0.5372 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: 0.1101 S13: -0.2114 REMARK 3 S21: -0.1853 S22: 0.0885 S23: -0.1133 REMARK 3 S31: 0.1861 S32: 0.0376 S33: -0.0665 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): -22.1000 -1.6750 -22.9770 REMARK 3 T TENSOR REMARK 3 T11: 0.0218 T22: 0.0538 REMARK 3 T33: 0.0371 T12: -0.0125 REMARK 3 T13: 0.0053 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.2858 L22: 0.3219 REMARK 3 L33: 0.6187 L12: -0.1414 REMARK 3 L13: 0.0591 L23: -0.1319 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: -0.0069 S13: 0.0023 REMARK 3 S21: -0.0535 S22: 0.0498 S23: 0.0364 REMARK 3 S31: 0.0011 S32: -0.0589 S33: -0.0362 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 202 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): -6.414 11.785 -24.244 REMARK 3 T TENSOR REMARK 3 T11: 0.0410 T22: 0.0205 REMARK 3 T33: 0.0618 T12: -0.0078 REMARK 3 T13: -0.0108 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 3.4799 L22: 1.6678 REMARK 3 L33: 5.0809 L12: 2.2945 REMARK 3 L13: -2.7681 L23: -2.4928 REMARK 3 S TENSOR REMARK 3 S11: -0.1543 S12: -0.1055 S13: -0.1819 REMARK 3 S21: -0.0724 S22: -0.0897 S23: -0.1452 REMARK 3 S31: 0.0127 S32: 0.1495 S33: 0.2440 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 209 A 228 REMARK 3 ORIGIN FOR THE GROUP (A): -18.677 5.458 -31.044 REMARK 3 T TENSOR REMARK 3 T11: 0.0444 T22: 0.0464 REMARK 3 T33: 0.0282 T12: -0.0030 REMARK 3 T13: 0.0190 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.7451 L22: 0.6601 REMARK 3 L33: 0.6022 L12: 0.5279 REMARK 3 L13: -0.0031 L23: -0.5452 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: 0.0131 S13: 0.0883 REMARK 3 S21: -0.0361 S22: 0.0042 S23: 0.0096 REMARK 3 S31: 0.0182 S32: -0.0076 S33: 0.0045 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 229 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): -20.126 11.294 -18.870 REMARK 3 T TENSOR REMARK 3 T11: 0.0104 T22: 0.0634 REMARK 3 T33: 0.0416 T12: 0.0157 REMARK 3 T13: 0.0003 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.3413 L22: 0.5312 REMARK 3 L33: 0.6559 L12: 0.0007 REMARK 3 L13: 0.3872 L23: -0.3379 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: -0.0118 S13: 0.0342 REMARK 3 S21: 0.0218 S22: 0.0206 S23: 0.0267 REMARK 3 S31: -0.0615 S32: -0.0312 S33: 0.0198 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 250 A 260 REMARK 3 ORIGIN FOR THE GROUP (A): -10.203 14.450 -32.975 REMARK 3 T TENSOR REMARK 3 T11: 0.0484 T22: 0.0309 REMARK 3 T33: 0.0668 T12: -0.0049 REMARK 3 T13: -0.0151 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.6524 L22: 0.1062 REMARK 3 L33: 2.3459 L12: -0.2086 REMARK 3 L13: -1.3918 L23: 0.4776 REMARK 3 S TENSOR REMARK 3 S11: -0.0972 S12: 0.0492 S13: 0.0434 REMARK 3 S21: -0.0300 S22: 0.0067 S23: 0.0183 REMARK 3 S31: -0.0904 S32: -0.0127 S33: 0.0904 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 32 B 59 REMARK 3 ORIGIN FOR THE GROUP (A): 11.784 17.781 -5.951 REMARK 3 T TENSOR REMARK 3 T11: 0.0504 T22: 0.1027 REMARK 3 T33: 0.0130 T12: -0.0149 REMARK 3 T13: 0.0021 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.6342 L22: 1.9323 REMARK 3 L33: 0.7924 L12: 0.6713 REMARK 3 L13: -0.1427 L23: -1.0200 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: -0.1728 S13: 0.0107 REMARK 3 S21: -0.0591 S22: -0.0312 S23: -0.0291 REMARK 3 S31: 0.1232 S32: -0.0562 S33: 0.0053 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 60 B 71 REMARK 3 ORIGIN FOR THE GROUP (A): 6.410 17.193 -14.688 REMARK 3 T TENSOR REMARK 3 T11: 0.0183 T22: 0.0547 REMARK 3 T33: 0.0514 T12: -0.0161 REMARK 3 T13: 0.0016 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 6.6481 L22: 1.1233 REMARK 3 L33: 1.0128 L12: 0.5209 REMARK 3 L13: 1.4296 L23: -0.7614 REMARK 3 S TENSOR REMARK 3 S11: 0.0600 S12: 0.0882 S13: -0.0732 REMARK 3 S21: -0.0814 S22: 0.0582 S23: 0.1155 REMARK 3 S31: 0.0801 S32: -0.0176 S33: -0.1182 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 72 B 123 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6810 28.1360 -10.2030 REMARK 3 T TENSOR REMARK 3 T11: 0.0179 T22: 0.0667 REMARK 3 T33: 0.0393 T12: -0.0239 REMARK 3 T13: 0.0201 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.1857 L22: 0.2125 REMARK 3 L33: 0.8916 L12: -0.1872 REMARK 3 L13: -0.1031 L23: 0.1712 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: -0.0232 S13: 0.0244 REMARK 3 S21: -0.0123 S22: -0.0137 S23: -0.0183 REMARK 3 S31: -0.0052 S32: -0.0127 S33: -0.0090 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 124 B 152 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8270 35.2370 -21.5080 REMARK 3 T TENSOR REMARK 3 T11: 0.0295 T22: 0.0349 REMARK 3 T33: 0.0521 T12: 0.0086 REMARK 3 T13: 0.0273 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.8213 L22: 0.5597 REMARK 3 L33: 0.9939 L12: 0.3995 REMARK 3 L13: 0.3678 L23: 0.7223 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: 0.0201 S13: 0.1247 REMARK 3 S21: -0.0683 S22: -0.0157 S23: 0.0004 REMARK 3 S31: -0.1090 S32: -0.0408 S33: -0.0151 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 153 B 167 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0440 31.6000 -25.1720 REMARK 3 T TENSOR REMARK 3 T11: 0.0837 T22: 0.0546 REMARK 3 T33: 0.1048 T12: -0.0297 REMARK 3 T13: 0.0645 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.6151 L22: 0.6969 REMARK 3 L33: 0.6327 L12: -0.1346 REMARK 3 L13: -0.0708 L23: 0.3416 REMARK 3 S TENSOR REMARK 3 S11: 0.1027 S12: 0.0857 S13: 0.1489 REMARK 3 S21: -0.1282 S22: -0.0312 S23: -0.1985 REMARK 3 S31: -0.1889 S32: 0.1037 S33: -0.0716 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 168 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): 20.705 19.598 -21.742 REMARK 3 T TENSOR REMARK 3 T11: 0.0138 T22: 0.0482 REMARK 3 T33: 0.0496 T12: 0.0039 REMARK 3 T13: 0.0208 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.1993 L22: 0.3932 REMARK 3 L33: 0.7581 L12: -0.0815 REMARK 3 L13: -0.0474 L23: 0.1608 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: -0.0109 S13: -0.0010 REMARK 3 S21: -0.0594 S22: 0.0318 S23: -0.0772 REMARK 3 S31: 0.0060 S32: 0.0529 S33: -0.0360 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 202 B 208 REMARK 3 ORIGIN FOR THE GROUP (A): 7.615 9.855 -24.247 REMARK 3 T TENSOR REMARK 3 T11: 0.0849 T22: 0.0645 REMARK 3 T33: 0.0715 T12: 0.0379 REMARK 3 T13: -0.0090 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.9064 L22: 2.0885 REMARK 3 L33: 6.0148 L12: 2.4632 REMARK 3 L13: 4.1376 L23: 3.4995 REMARK 3 S TENSOR REMARK 3 S11: -0.0795 S12: -0.2299 S13: 0.2391 REMARK 3 S21: -0.0608 S22: -0.2143 S23: 0.2034 REMARK 3 S31: -0.0017 S32: -0.2802 S33: 0.2938 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 209 B 228 REMARK 3 ORIGIN FOR THE GROUP (A): 20.357 15.921 -30.356 REMARK 3 T TENSOR REMARK 3 T11: 0.0305 T22: 0.0602 REMARK 3 T33: 0.0430 T12: 0.0275 REMARK 3 T13: 0.0206 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.9890 L22: 0.5429 REMARK 3 L33: 0.9957 L12: 0.4612 REMARK 3 L13: -0.0318 L23: 0.5474 REMARK 3 S TENSOR REMARK 3 S11: -0.0334 S12: 0.0684 S13: -0.0895 REMARK 3 S21: -0.0326 S22: 0.0233 S23: -0.0297 REMARK 3 S31: -0.0136 S32: 0.0265 S33: 0.0101 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 229 B 250 REMARK 3 ORIGIN FOR THE GROUP (A): 20.729 10.493 -18.288 REMARK 3 T TENSOR REMARK 3 T11: 0.0283 T22: 0.0523 REMARK 3 T33: 0.0474 T12: 0.0203 REMARK 3 T13: 0.0045 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 1.1940 L22: 0.3893 REMARK 3 L33: 1.1020 L12: 0.0555 REMARK 3 L13: -0.3275 L23: 0.2539 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: -0.0060 S13: -0.0386 REMARK 3 S21: 0.0675 S22: -0.0375 S23: -0.0277 REMARK 3 S31: 0.0979 S32: 0.0870 S33: -0.0095 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 251 B 260 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9400 6.7390 -31.8600 REMARK 3 T TENSOR REMARK 3 T11: 0.0494 T22: 0.0492 REMARK 3 T33: 0.0531 T12: 0.0006 REMARK 3 T13: 0.0448 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.0563 L22: 1.1161 REMARK 3 L33: 2.8830 L12: 0.5039 REMARK 3 L13: 1.6746 L23: 0.3554 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.0288 S13: 0.0306 REMARK 3 S21: 0.0565 S22: -0.0452 S23: 0.0243 REMARK 3 S31: -0.0164 S32: 0.0675 S33: 0.0513 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4FSB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073293. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33380 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 40.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.15700 REMARK 200 R SYM FOR SHELL (I) : 0.15700 REMARK 200 FOR SHELL : 7.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1KO3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VIM-31 (12 MG/ML) 1:1 DILUTION WITH REMARK 280 THE CONDITION 0.2 M LITHIUM SULPHATE, 0.1 M TRIS-HCL PH 8.5, 30 % REMARK 280 PEG 4000, VAPOR DIFFUSION, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.35160 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.80221 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.35160 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 38.80221 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 261 REMARK 465 VAL A 262 REMARK 465 VAL A 263 REMARK 465 GLU A 264 REMARK 465 SER B 261 REMARK 465 VAL B 262 REMARK 465 VAL B 263 REMARK 465 GLU B 264 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 60 CD2 CE2 REMARK 470 LYS A 88 CD CE NZ REMARK 470 LYS B 88 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 612 O HOH B 616 1.64 REMARK 500 O HOH B 620 O HOH B 621 1.77 REMARK 500 O HOH A 640 O HOH A 641 1.81 REMARK 500 O HOH A 642 O HOH A 643 1.86 REMARK 500 O HOH B 623 O HOH B 624 1.88 REMARK 500 O HOH B 430 O HOH B 574 1.90 REMARK 500 O HOH B 621 O HOH B 622 2.05 REMARK 500 O HOH B 620 O HOH B 622 2.12 REMARK 500 OD1 ASP B 74 O HOH B 485 2.14 REMARK 500 O HOH A 554 O HOH A 589 2.15 REMARK 500 O HOH A 490 O HOH A 620 2.15 REMARK 500 O GLY A 62 O HOH A 587 2.16 REMARK 500 O HOH B 535 O HOH B 562 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLU A 144 NH2 ARG B 164 4544 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 112 CG HIS A 112 CD2 0.055 REMARK 500 HIS A 238 CG HIS A 238 CD2 0.056 REMARK 500 HIS B 54 CG HIS B 54 CD2 0.054 REMARK 500 HIS B 249 CG HIS B 249 CD2 0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 82 146.80 72.62 REMARK 500 TRP A 85 84.02 66.83 REMARK 500 ALA A 176 -104.34 -152.37 REMARK 500 ASP B 82 147.53 72.16 REMARK 500 THR B 83 -168.00 -76.35 REMARK 500 TRP B 85 88.01 67.43 REMARK 500 ALA B 176 -105.00 -153.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 112 NE2 REMARK 620 2 HIS A 114 ND1 95.0 REMARK 620 3 HIS A 177 NE2 99.6 117.9 REMARK 620 4 HOH A 413 O 172.6 82.9 87.5 REMARK 620 5 HOH A 450 O 91.3 127.0 112.6 84.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 249 ND1 REMARK 620 2 HOH A 640 O 102.4 REMARK 620 3 HOH A 641 O 84.3 42.5 REMARK 620 4 HOH A 642 O 106.0 113.1 155.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 112 NE2 REMARK 620 2 HIS B 114 ND1 94.2 REMARK 620 3 HIS B 177 NE2 98.7 116.2 REMARK 620 4 HOH B 407 O 173.9 84.3 87.2 REMARK 620 5 HOH B 448 O 91.9 126.6 115.1 84.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 249 ND1 REMARK 620 2 HOH B 620 O 108.2 REMARK 620 3 HOH B 623 O 105.5 106.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FR7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM-31 IN ITS REMARK 900 REDUCED FORM AT 1.61 A DBREF 4FSB A 29 264 UNP Q7BI22 Q7BI22_ENTCL 31 266 DBREF 4FSB B 29 264 UNP Q7BI22 Q7BI22_ENTCL 31 266 SEQADV 4FSB HIS A 199 UNP Q7BI22 TYR 201 ENGINEERED MUTATION SEQADV 4FSB ARG A 227 UNP Q7BI22 HIS 229 ENGINEERED MUTATION SEQADV 4FSB HIS B 199 UNP Q7BI22 TYR 201 ENGINEERED MUTATION SEQADV 4FSB ARG B 227 UNP Q7BI22 HIS 229 ENGINEERED MUTATION SEQRES 1 A 236 GLY GLU TYR PRO THR VAL SER GLU ILE PRO VAL GLY GLU SEQRES 2 A 236 VAL ARG LEU TYR GLN ILE ALA ASP GLY VAL TRP SER HIS SEQRES 3 A 236 ILE ALA THR GLN SER PHE ASP GLY ALA VAL TYR PRO SER SEQRES 4 A 236 ASN GLY LEU ILE VAL ARG ASP GLY ASP GLU LEU LEU LEU SEQRES 5 A 236 ILE ASP THR ALA TRP GLY ALA LYS ASN THR ALA ALA LEU SEQRES 6 A 236 LEU ALA GLU ILE GLU LYS GLN ILE GLY LEU PRO VAL THR SEQRES 7 A 236 ARG ALA VAL SER THR HIS PHE HIS ASP ASP ARG VAL GLY SEQRES 8 A 236 GLY VAL ASP VAL LEU ARG ALA ALA GLY VAL ALA THR TYR SEQRES 9 A 236 ALA SER PRO SER THR ARG ARG LEU ALA GLU VAL GLU GLY SEQRES 10 A 236 ASN GLU ILE PRO THR HIS SER LEU GLU GLY LEU SER SER SEQRES 11 A 236 SER GLY ASP ALA VAL ARG PHE GLY PRO VAL GLU LEU PHE SEQRES 12 A 236 TYR PRO GLY ALA ALA HIS SER THR ASP ASN LEU VAL VAL SEQRES 13 A 236 TYR VAL PRO SER ALA SER VAL LEU TYR GLY GLY OCS ALA SEQRES 14 A 236 ILE HIS GLU LEU SER ARG THR SER ALA GLY ASN VAL ALA SEQRES 15 A 236 ASP ALA ASP LEU ALA GLU TRP PRO THR SER ILE GLU ARG SEQRES 16 A 236 ILE GLN GLN ARG TYR PRO GLU ALA GLN PHE VAL ILE PRO SEQRES 17 A 236 GLY HIS GLY LEU PRO GLY GLY LEU ASP LEU LEU LYS HIS SEQRES 18 A 236 THR THR ASN VAL VAL LYS ALA HIS THR ASN ARG SER VAL SEQRES 19 A 236 VAL GLU SEQRES 1 B 236 GLY GLU TYR PRO THR VAL SER GLU ILE PRO VAL GLY GLU SEQRES 2 B 236 VAL ARG LEU TYR GLN ILE ALA ASP GLY VAL TRP SER HIS SEQRES 3 B 236 ILE ALA THR GLN SER PHE ASP GLY ALA VAL TYR PRO SER SEQRES 4 B 236 ASN GLY LEU ILE VAL ARG ASP GLY ASP GLU LEU LEU LEU SEQRES 5 B 236 ILE ASP THR ALA TRP GLY ALA LYS ASN THR ALA ALA LEU SEQRES 6 B 236 LEU ALA GLU ILE GLU LYS GLN ILE GLY LEU PRO VAL THR SEQRES 7 B 236 ARG ALA VAL SER THR HIS PHE HIS ASP ASP ARG VAL GLY SEQRES 8 B 236 GLY VAL ASP VAL LEU ARG ALA ALA GLY VAL ALA THR TYR SEQRES 9 B 236 ALA SER PRO SER THR ARG ARG LEU ALA GLU VAL GLU GLY SEQRES 10 B 236 ASN GLU ILE PRO THR HIS SER LEU GLU GLY LEU SER SER SEQRES 11 B 236 SER GLY ASP ALA VAL ARG PHE GLY PRO VAL GLU LEU PHE SEQRES 12 B 236 TYR PRO GLY ALA ALA HIS SER THR ASP ASN LEU VAL VAL SEQRES 13 B 236 TYR VAL PRO SER ALA SER VAL LEU TYR GLY GLY OCS ALA SEQRES 14 B 236 ILE HIS GLU LEU SER ARG THR SER ALA GLY ASN VAL ALA SEQRES 15 B 236 ASP ALA ASP LEU ALA GLU TRP PRO THR SER ILE GLU ARG SEQRES 16 B 236 ILE GLN GLN ARG TYR PRO GLU ALA GLN PHE VAL ILE PRO SEQRES 17 B 236 GLY HIS GLY LEU PRO GLY GLY LEU ASP LEU LEU LYS HIS SEQRES 18 B 236 THR THR ASN VAL VAL LYS ALA HIS THR ASN ARG SER VAL SEQRES 19 B 236 VAL GLU MODRES 4FSB OCS A 196 CYS CYSTEINESULFONIC ACID MODRES 4FSB OCS B 196 CYS CYSTEINESULFONIC ACID HET OCS A 196 9 HET OCS B 196 9 HET ZN A 301 1 HET ZN A 302 1 HET CL A 303 1 HET CL A 304 1 HET ZN B 301 1 HET ZN B 302 1 HET CL B 303 1 HET CL B 304 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CL 4(CL 1-) FORMUL 11 HOH *473(H2 O) HELIX 1 1 GLY A 86 ILE A 101 1 16 HELIX 2 2 HIS A 114 GLY A 119 1 6 HELIX 3 3 GLY A 120 ALA A 127 1 8 HELIX 4 4 SER A 134 GLY A 145 1 12 HELIX 5 5 OCS A 196 ILE A 198 5 3 HELIX 6 6 GLU A 216 TYR A 228 1 13 HELIX 7 7 LEU A 244 ASN A 259 1 16 HELIX 8 8 GLY B 86 ILE B 101 1 16 HELIX 9 9 HIS B 114 GLY B 119 1 6 HELIX 10 10 GLY B 120 ALA B 127 1 8 HELIX 11 11 SER B 134 GLY B 145 1 12 HELIX 12 12 OCS B 196 ILE B 198 5 3 HELIX 13 13 GLU B 216 TYR B 228 1 13 HELIX 14 14 LEU B 244 ASN B 259 1 16 SHEET 1 A 7 VAL A 42 ALA A 48 0 SHEET 2 A 7 VAL A 51 PHE A 60 -1 O ILE A 55 N ARG A 43 SHEET 3 A 7 ALA A 63 ASP A 74 -1 O TYR A 65 N GLN A 58 SHEET 4 A 7 GLU A 77 ILE A 81 -1 O ILE A 81 N LEU A 70 SHEET 5 A 7 VAL A 105 VAL A 109 1 O ARG A 107 N LEU A 80 SHEET 6 A 7 ALA A 130 ALA A 133 1 O TYR A 132 N ALA A 108 SHEET 7 A 7 HIS A 151 SER A 152 1 O HIS A 151 N THR A 131 SHEET 1 B 5 ASP A 161 PHE A 165 0 SHEET 2 B 5 VAL A 168 TYR A 172 -1 O LEU A 170 N VAL A 163 SHEET 3 B 5 VAL A 183 VAL A 186 -1 O VAL A 183 N PHE A 171 SHEET 4 B 5 VAL A 191 GLY A 195 -1 O TYR A 193 N VAL A 184 SHEET 5 B 5 PHE A 233 PRO A 236 1 O PHE A 233 N LEU A 192 SHEET 1 C 7 VAL B 42 ALA B 48 0 SHEET 2 C 7 VAL B 51 PHE B 60 -1 O ILE B 55 N ARG B 43 SHEET 3 C 7 ALA B 63 ASP B 74 -1 O TYR B 65 N GLN B 58 SHEET 4 C 7 GLU B 77 ILE B 81 -1 O ILE B 81 N LEU B 70 SHEET 5 C 7 VAL B 105 VAL B 109 1 O ARG B 107 N LEU B 80 SHEET 6 C 7 ALA B 130 ALA B 133 1 O TYR B 132 N ALA B 108 SHEET 7 C 7 HIS B 151 SER B 152 1 O HIS B 151 N THR B 131 SHEET 1 D 5 ASP B 161 PHE B 165 0 SHEET 2 D 5 VAL B 168 TYR B 172 -1 O LEU B 170 N VAL B 163 SHEET 3 D 5 VAL B 183 TYR B 185 -1 O VAL B 183 N PHE B 171 SHEET 4 D 5 VAL B 191 GLY B 195 -1 O TYR B 193 N VAL B 184 SHEET 5 D 5 PHE B 233 PRO B 236 1 O PHE B 233 N LEU B 192 LINK C GLY A 195 N OCS A 196 1555 1555 1.32 LINK C OCS A 196 N ALA A 197 1555 1555 1.34 LINK C GLY B 195 N OCS B 196 1555 1555 1.33 LINK C OCS B 196 N ALA B 197 1555 1555 1.33 LINK NE2 HIS A 112 ZN ZN A 301 1555 1555 2.07 LINK ND1 HIS A 114 ZN ZN A 301 1555 1555 1.96 LINK NE2 HIS A 177 ZN ZN A 301 1555 1555 2.12 LINK ND1 HIS A 249 ZN ZN A 302 1555 1555 2.18 LINK ZN ZN A 301 O HOH A 413 1555 1555 2.42 LINK ZN ZN A 301 O HOH A 450 1555 1555 1.91 LINK ZN ZN A 302 O HOH A 640 1555 1555 2.09 LINK ZN ZN A 302 O HOH A 641 1555 1555 2.68 LINK ZN ZN A 302 O HOH A 642 1555 1555 1.99 LINK NE2 HIS B 112 ZN ZN B 302 1555 1555 2.17 LINK ND1 HIS B 114 ZN ZN B 302 1555 1555 1.99 LINK NE2 HIS B 177 ZN ZN B 302 1555 1555 2.06 LINK ND1 HIS B 249 ZN ZN B 301 1555 1555 2.07 LINK ZN ZN B 301 O HOH B 620 1555 1555 2.05 LINK ZN ZN B 301 O HOH B 623 1555 1555 2.05 LINK ZN ZN B 302 O HOH B 407 1555 1555 2.37 LINK ZN ZN B 302 O HOH B 448 1555 1555 2.00 SITE 1 AC1 6 HIS A 112 HIS A 114 HIS A 177 OCS A 196 SITE 2 AC1 6 HOH A 413 HOH A 450 SITE 1 AC2 6 HIS A 151 HIS A 249 HOH A 640 HOH A 641 SITE 2 AC2 6 HOH A 642 HOH A 643 SITE 1 AC3 3 GLY A 155 SER A 157 HOH A 630 SITE 1 AC4 2 ARG A 164 GLY A 166 SITE 1 AC5 5 HIS B 151 HIS B 249 HOH B 620 HOH B 623 SITE 2 AC5 5 HOH B 624 SITE 1 AC6 6 HIS B 112 HIS B 114 HIS B 177 OCS B 196 SITE 2 AC6 6 HOH B 407 HOH B 448 SITE 1 AC7 2 GLY B 155 HOH B 614 SITE 1 AC8 2 GLY B 166 HOH B 556 CRYST1 67.020 80.130 77.639 90.00 91.71 90.00 I 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014921 0.000000 0.000445 0.00000 SCALE2 0.000000 0.012480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012886 0.00000