HEADER PROTEIN TRANSPORT 27-JUN-12 4FTF TITLE STRUCTURE OF THE TYPE II SECRETION SYSTEM PILOTIN ASPS FROM VIBRIO TITLE 2 CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALTERNATE SECRETIN PATHWAY SUBUNIT S (VC395_1821, VC1703); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 55-163; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 44104; SOURCE 4 STRAIN: 569B; SOURCE 5 GENE: VC395_1821, VC_1703; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PILOTIN, LIPOPROTEIN, SECRETIN, PROTEIN SECRETION, PFAMB PB000779, KEYWDS 2 SECRETIN BINDING, OUTER MEMBRANE, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR K.V.KOROTKOV,T.J.EVANS REVDAT 2 06-FEB-13 4FTF 1 JRNL REVDAT 1 28-NOV-12 4FTF 0 JRNL AUTH R.A.DUNSTAN,E.HEINZ,L.C.WIJEYEWICKREMA,R.N.PIKE,A.W.PURCELL, JRNL AUTH 2 T.J.EVANS,J.PRASZKIER,R.M.ROBINS-BROWNE,R.A.STRUGNELL, JRNL AUTH 3 K.V.KOROTKOV,T.LITHGOW JRNL TITL ASSEMBLY OF THE TYPE II SECRETION SYSTEM SUCH AS FOUND IN JRNL TITL 2 VIBRIO CHOLERAE DEPENDS ON THE NOVEL PILOTIN ASPS. JRNL REF PLOS PATHOG. V. 9 03117 2013 JRNL REFN ISSN 1553-7366 JRNL PMID 23326233 JRNL DOI 10.1371/JOURNAL.PPAT.1003117 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 17689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 907 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 982 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 830 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.40000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.067 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.996 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 870 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 592 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1174 ; 1.529 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1457 ; 0.883 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 116 ; 5.216 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 38 ;36.200 ;25.263 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 169 ; 9.629 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;10.350 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 138 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 972 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 155 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 10 REMARK 3 ORIGIN FOR THE GROUP (A): 34.5160 13.6900 12.8790 REMARK 3 T TENSOR REMARK 3 T11: 0.0364 T22: 0.1110 REMARK 3 T33: 0.0154 T12: -0.0033 REMARK 3 T13: -0.0092 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 12.3079 L22: 7.4135 REMARK 3 L33: 5.3306 L12: -2.4675 REMARK 3 L13: 0.7550 L23: 0.5090 REMARK 3 S TENSOR REMARK 3 S11: 0.1636 S12: 0.4466 S13: -0.3782 REMARK 3 S21: 0.0256 S22: -0.1427 S23: -0.0265 REMARK 3 S31: 0.1025 S32: 0.1977 S33: -0.0209 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 17 REMARK 3 ORIGIN FOR THE GROUP (A): 30.5110 17.9760 19.6990 REMARK 3 T TENSOR REMARK 3 T11: 0.0263 T22: 0.0691 REMARK 3 T33: 0.0178 T12: 0.0008 REMARK 3 T13: -0.0004 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.8422 L22: 3.6028 REMARK 3 L33: 7.4785 L12: -0.9352 REMARK 3 L13: -0.4706 L23: 2.7382 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: 0.0182 S13: -0.0795 REMARK 3 S21: 0.0460 S22: -0.0200 S23: 0.0564 REMARK 3 S31: 0.0633 S32: 0.1198 S33: 0.0232 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2250 23.7660 30.2650 REMARK 3 T TENSOR REMARK 3 T11: 0.0265 T22: 0.0701 REMARK 3 T33: 0.0397 T12: 0.0008 REMARK 3 T13: 0.0010 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.8801 L22: 3.8197 REMARK 3 L33: 8.8922 L12: -1.2469 REMARK 3 L13: -2.3069 L23: 3.9571 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.1156 S13: 0.0129 REMARK 3 S21: 0.0329 S22: -0.1094 S23: 0.1062 REMARK 3 S31: -0.0463 S32: -0.2107 S33: 0.1314 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3690 22.2150 41.4320 REMARK 3 T TENSOR REMARK 3 T11: 0.0696 T22: 0.1039 REMARK 3 T33: 0.0903 T12: -0.0436 REMARK 3 T13: -0.0030 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 3.7791 L22: 33.8833 REMARK 3 L33: 13.0452 L12: -11.3105 REMARK 3 L13: 6.1276 L23: -18.0260 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: -0.0717 S13: -0.2404 REMARK 3 S21: 0.1189 S22: 0.1865 S23: 0.7417 REMARK 3 S31: 0.2211 S32: -0.3409 S33: -0.1558 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1160 23.6820 42.6050 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: 0.0786 REMARK 3 T33: 0.0220 T12: -0.0102 REMARK 3 T13: -0.0061 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 3.6687 L22: 14.3227 REMARK 3 L33: 11.6375 L12: -1.5863 REMARK 3 L13: 1.1163 L23: -8.2848 REMARK 3 S TENSOR REMARK 3 S11: 0.0516 S12: -0.3791 S13: -0.1839 REMARK 3 S21: 0.4248 S22: -0.0486 S23: 0.0756 REMARK 3 S31: -0.2547 S32: 0.0333 S33: -0.0031 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6460 24.7030 26.8670 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: 0.0502 REMARK 3 T33: 0.0400 T12: -0.0194 REMARK 3 T13: -0.0080 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 3.0375 L22: 3.4602 REMARK 3 L33: 11.7365 L12: -2.3417 REMARK 3 L13: -3.9117 L23: 6.3445 REMARK 3 S TENSOR REMARK 3 S11: 0.0772 S12: 0.0004 S13: 0.1144 REMARK 3 S21: -0.2414 S22: 0.1070 S23: -0.1103 REMARK 3 S31: -0.4743 S32: 0.2235 S33: -0.1842 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9870 24.5710 34.0860 REMARK 3 T TENSOR REMARK 3 T11: 0.0393 T22: 0.0485 REMARK 3 T33: 0.0367 T12: -0.0061 REMARK 3 T13: -0.0069 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 6.9094 L22: 5.3119 REMARK 3 L33: 20.0840 L12: -1.8459 REMARK 3 L13: -3.7774 L23: 8.0639 REMARK 3 S TENSOR REMARK 3 S11: 0.1399 S12: -0.3151 S13: 0.0401 REMARK 3 S21: -0.2396 S22: -0.0003 S23: -0.1748 REMARK 3 S31: -0.4346 S32: 0.2820 S33: -0.1396 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): 36.9850 24.9970 52.5540 REMARK 3 T TENSOR REMARK 3 T11: 0.0747 T22: 0.1001 REMARK 3 T33: 0.0176 T12: 0.0021 REMARK 3 T13: 0.0098 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.0854 L22: 2.1475 REMARK 3 L33: 20.2859 L12: -0.1036 REMARK 3 L13: 3.5088 L23: -5.7186 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: -0.0681 S13: 0.0343 REMARK 3 S21: 0.1754 S22: 0.0497 S23: 0.0294 REMARK 3 S31: -0.4732 S32: -0.2714 S33: -0.0129 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 65 REMARK 3 ORIGIN FOR THE GROUP (A): 41.9760 17.1130 48.3160 REMARK 3 T TENSOR REMARK 3 T11: 0.0538 T22: 0.0728 REMARK 3 T33: 0.0231 T12: 0.0117 REMARK 3 T13: -0.0103 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 5.3394 L22: 6.1252 REMARK 3 L33: 13.5987 L12: 0.6270 REMARK 3 L13: 2.1566 L23: 0.6309 REMARK 3 S TENSOR REMARK 3 S11: -0.0479 S12: -0.1650 S13: 0.0544 REMARK 3 S21: 0.0991 S22: -0.1241 S23: -0.2284 REMARK 3 S31: 0.0675 S32: -0.0114 S33: 0.1721 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 66 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): 37.8570 13.1440 41.8630 REMARK 3 T TENSOR REMARK 3 T11: 0.0604 T22: 0.0754 REMARK 3 T33: 0.0284 T12: 0.0166 REMARK 3 T13: -0.0066 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 16.6212 L22: 12.9936 REMARK 3 L33: 10.7830 L12: 12.0068 REMARK 3 L13: 7.7133 L23: 5.3539 REMARK 3 S TENSOR REMARK 3 S11: 0.3141 S12: -0.2824 S13: -0.6211 REMARK 3 S21: 0.3347 S22: -0.1092 S23: -0.5194 REMARK 3 S31: 0.2436 S32: 0.0984 S33: -0.2050 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7880 10.1670 36.6380 REMARK 3 T TENSOR REMARK 3 T11: 0.0614 T22: 0.0670 REMARK 3 T33: 0.0604 T12: -0.0129 REMARK 3 T13: 0.0204 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 8.3373 L22: 3.3579 REMARK 3 L33: 11.2377 L12: -2.0211 REMARK 3 L13: 3.9371 L23: 2.6122 REMARK 3 S TENSOR REMARK 3 S11: 0.1491 S12: -0.3393 S13: -0.4006 REMARK 3 S21: 0.0817 S22: 0.0782 S23: 0.1041 REMARK 3 S31: -0.0313 S32: -0.4294 S33: -0.2273 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 31.2010 10.2610 28.4870 REMARK 3 T TENSOR REMARK 3 T11: 0.0424 T22: 0.0381 REMARK 3 T33: 0.0390 T12: -0.0040 REMARK 3 T13: -0.0032 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 4.4256 L22: 1.9717 REMARK 3 L33: 6.1834 L12: 0.5993 REMARK 3 L13: -1.9811 L23: -1.5400 REMARK 3 S TENSOR REMARK 3 S11: -0.0334 S12: 0.0334 S13: -0.1488 REMARK 3 S21: -0.1058 S22: -0.0025 S23: 0.0752 REMARK 3 S31: 0.0705 S32: -0.1822 S33: 0.0359 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 38.1700 20.4430 33.3040 REMARK 3 T TENSOR REMARK 3 T11: 0.0478 T22: 0.0992 REMARK 3 T33: 0.0569 T12: 0.0197 REMARK 3 T13: -0.0060 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 3.2398 L22: 6.1225 REMARK 3 L33: 12.0855 L12: 3.1714 REMARK 3 L13: 5.6567 L23: 8.0683 REMARK 3 S TENSOR REMARK 3 S11: -0.0584 S12: 0.0708 S13: -0.0666 REMARK 3 S21: -0.0778 S22: 0.1981 S23: -0.0327 REMARK 3 S31: -0.0926 S32: 0.3137 S33: -0.1397 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 41.3880 31.1160 44.2230 REMARK 3 T TENSOR REMARK 3 T11: 0.0697 T22: 0.0959 REMARK 3 T33: 0.0591 T12: -0.0026 REMARK 3 T13: -0.0257 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 8.1289 L22: 19.0218 REMARK 3 L33: 7.6209 L12: -2.5575 REMARK 3 L13: -6.9737 L23: 1.2249 REMARK 3 S TENSOR REMARK 3 S11: 0.1784 S12: -0.1230 S13: 0.4548 REMARK 3 S21: 0.3191 S22: 0.0654 S23: -0.6650 REMARK 3 S31: -0.4358 S32: 0.2751 S33: -0.2438 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): 42.5640 19.7980 36.1450 REMARK 3 T TENSOR REMARK 3 T11: 0.0259 T22: 0.1041 REMARK 3 T33: 0.0309 T12: -0.0034 REMARK 3 T13: 0.0141 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 3.1658 L22: 13.8765 REMARK 3 L33: 16.7540 L12: 1.5091 REMARK 3 L13: 5.2461 L23: 12.7984 REMARK 3 S TENSOR REMARK 3 S11: 0.0347 S12: 0.0423 S13: -0.0192 REMARK 3 S21: -0.0203 S22: 0.1379 S23: -0.1856 REMARK 3 S31: 0.0316 S32: 0.1729 S33: -0.1725 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 40.3270 7.7710 31.2260 REMARK 3 T TENSOR REMARK 3 T11: 0.0517 T22: 0.0321 REMARK 3 T33: 0.0760 T12: 0.0229 REMARK 3 T13: -0.0085 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 13.2914 L22: 8.8633 REMARK 3 L33: 21.0710 L12: 0.9742 REMARK 3 L13: -4.2915 L23: -5.2118 REMARK 3 S TENSOR REMARK 3 S11: -0.0754 S12: 0.0033 S13: -0.8602 REMARK 3 S21: -0.0605 S22: -0.0602 S23: -0.1764 REMARK 3 S31: 0.5980 S32: 0.3184 S33: 0.1356 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 4FTF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-12. REMARK 100 THE RCSB ID CODE IS RCSB073333. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17689 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 47.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.95800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M ZINC ACETATE, 20% PEG 3350, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 17.08000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.08000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 112 REMARK 465 GLN A 113 REMARK 465 GLY A 114 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ZN ZN A 203 OXT ACT A 205 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 78 OD1 REMARK 620 2 ASP A 78 OD2 55.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 455 O REMARK 620 2 GLU A 26 OE2 81.6 REMARK 620 3 HOH A 397 O 162.9 97.2 REMARK 620 4 GLU A 26 OE1 101.7 57.4 91.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 3 O REMARK 620 2 HOH A 398 O 168.3 REMARK 620 3 GLY A 3 N 84.8 93.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 206 DBREF 4FTF A 6 114 UNP Q9KRD9 Q9KRD9_VIBCH 55 163 SEQADV 4FTF GLY A 3 UNP Q9KRD9 EXPRESSION TAG SEQADV 4FTF ALA A 4 UNP Q9KRD9 EXPRESSION TAG SEQADV 4FTF MET A 5 UNP Q9KRD9 EXPRESSION TAG SEQRES 1 A 112 GLY ALA MET ALA GLU LYS GLN ARG ASN LEU GLU LEU LEU SEQRES 2 A 112 ALA GLY ASN ARG ALA SER LEU LEU SER THR GLU LEU PRO SEQRES 3 A 112 LEU GLU PHE GLY PRO LEU ASN ILE LEU ARG ALA THR ALA SEQRES 4 A 112 LYS GLY SER THR VAL GLU LEU MET MET VAL TYR ASN THR SEQRES 5 A 112 ASP ALA ASN ASN ALA LYS PRO THR GLU GLN VAL LEU GLN SEQRES 6 A 112 SER ALA VAL SER SER PHE CYS ALA ASN LYS ASP ILE ARG SEQRES 7 A 112 SER ASN LEU ASP VAL GLY ILE SER TYR ARG ILE GLN MET SEQRES 8 A 112 ARG ASN THR ARG GLY GLN LEU MET ALA ASP GLN LEU VAL SEQRES 9 A 112 THR LYS GLU SER CYS LYS GLN GLY HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 2 HET ACT A 204 4 HET ACT A 205 4 HET ACT A 206 4 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 2 ZN 3(ZN 2+) FORMUL 5 ACT 3(C2 H3 O2 1-) FORMUL 8 HOH *169(H2 O) HELIX 1 1 ALA A 4 THR A 25 1 22 HELIX 2 2 PRO A 61 ASN A 76 1 16 HELIX 3 3 ASN A 76 GLY A 86 1 11 HELIX 4 4 THR A 107 CYS A 111 5 5 SHEET 1 A 5 LEU A 29 PHE A 31 0 SHEET 2 A 5 LEU A 34 LYS A 42 -1 O ILE A 36 N LEU A 29 SHEET 3 A 5 THR A 45 VAL A 51 -1 O GLU A 47 N THR A 40 SHEET 4 A 5 SER A 88 ARG A 94 1 O ARG A 90 N LEU A 48 SHEET 5 A 5 LEU A 100 VAL A 106 -1 O MET A 101 N MET A 93 SSBOND 1 CYS A 74 CYS A 111 1555 1555 2.09 LINK OD1 ASP A 78 ZN B ZN A 203 1555 1555 1.82 LINK ZN ZN A 202 O HOH A 455 1555 1555 1.86 LINK OE2 GLU A 26 ZN ZN A 202 1555 1555 1.91 LINK O GLY A 3 ZN ZN A 201 1555 1555 2.05 LINK OD2 ASP A 78 ZN A ZN A 203 1555 1555 2.07 LINK ZN ZN A 201 O HOH A 398 1555 1555 2.07 LINK N GLY A 3 ZN ZN A 201 1555 1555 2.08 LINK ZN ZN A 202 O HOH A 397 1555 1555 2.10 LINK OE1 GLU A 26 ZN ZN A 202 1555 1555 2.56 LINK OD2 ASP A 78 ZN B ZN A 203 1555 1555 2.56 CISPEP 1 LEU A 27 PRO A 28 0 -6.02 SITE 1 AC1 2 GLY A 3 HOH A 398 SITE 1 AC2 3 GLU A 26 HOH A 397 HOH A 455 SITE 1 AC3 7 GLN A 9 GLU A 13 ASN A 58 ASP A 78 SITE 2 AC3 7 ACT A 205 HOH A 400 HOH A 466 SITE 1 AC4 5 ARG A 10 GLN A 104 LEU A 105 SER A 110 SITE 2 AC4 5 HOH A 393 SITE 1 AC5 8 GLU A 13 ASN A 57 ASN A 58 ASP A 78 SITE 2 AC5 8 ZN A 203 HOH A 356 HOH A 385 HOH A 400 SITE 1 AC6 5 ARG A 19 LEU A 23 ILE A 79 ASN A 82 SITE 2 AC6 5 TYR A 89 CRYST1 34.160 63.860 47.540 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029274 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015659 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021035 0.00000