data_4FTH # _entry.id 4FTH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4FTH pdb_00004fth 10.2210/pdb4fth/pdb NDB NA1894 ? ? RCSB RCSB073335 ? ? WWPDB D_1000073335 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3E7L _pdbx_database_related.details ;Crystal structure of sigma-54 activator NtrC4's DNA binding domain ; _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4FTH _pdbx_database_status.recvd_initial_deposition_date 2012-06-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vidangos, N.K.' 1 'Heideker, J.' 2 'Lyubimov, A.Y.' 3 'Lamers, M.' 4 'Huo, Y.' 5 'Pelton, J.G.' 6 'Ton, J.' 7 'Gralla, J.D.' 8 'Kuriyan, J.' 9 'Berger, J.M.' 10 'Wemmer, D.E.' 11 # _citation.id primary _citation.title 'DNA Recognition by a sigma (54) Transcriptional Activator from Aquifex aeolicus.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 426 _citation.page_first 3553 _citation.page_last 3568 _citation.year 2014 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25158097 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2014.08.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vidangos, N.K.' 1 ? primary 'Heideker, J.' 2 ? primary 'Lyubimov, A.' 3 ? primary 'Lamers, M.' 4 ? primary 'Huo, Y.' 5 ? primary 'Pelton, J.G.' 6 ? primary 'Ton, J.' 7 ? primary 'Gralla, J.' 8 ? primary 'Berger, J.' 9 ? primary 'Wemmer, D.E.' 10 ? # _cell.entry_id 4FTH _cell.length_a 67.436 _cell.length_b 28.798 _cell.length_c 74.931 _cell.angle_alpha 90.00 _cell.angle_beta 94.55 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4FTH _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator (NtrC family)' 8441.859 2 ? ? 'C-terminal domain (UNP residues 374-442)' ? 2 polymer syn "5'-D(*AP*CP*TP*TP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*AP*AP*AP*TP*GP*CP*AP*T)-3'" 6734.391 1 ? ? ? 'lpxC upstream DNA-binding site, forward strand' 3 polymer syn "5'-D(P*GP*AP*TP*GP*CP*AP*TP*TP*TP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*AP*A)-3'" 6461.208 1 ? ? ? 'lpxC upstream DNA-binding site, reverse strand' 4 water nat water 18.015 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no LKEKSWRDLSYLLKIKELKEAKKEFEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSLNIRVKSS LKEKSWRDLSYLLKIKELKEAKKEFEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSLNIRVKSS A,B ? 2 polydeoxyribonucleotide no no ;(DA)(DC)(DT)(DT)(DG)(DC)(DA)(DA)(DA)(DT)(DT)(DT)(DG)(DC)(DA)(DA)(DA)(DT)(DG)(DC) (DA)(DT) ; ACTTGCAAATTTGCAAATGCAT C ? 3 polydeoxyribonucleotide no no ;(DG)(DA)(DT)(DG)(DC)(DA)(DT)(DT)(DT)(DG)(DC)(DA)(DA)(DA)(DT)(DT)(DT)(DG)(DC)(DA) (DA) ; GATGCATTTGCAAATTTGCAA D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 LYS n 1 3 GLU n 1 4 LYS n 1 5 SER n 1 6 TRP n 1 7 ARG n 1 8 ASP n 1 9 LEU n 1 10 SER n 1 11 TYR n 1 12 LEU n 1 13 LEU n 1 14 LYS n 1 15 ILE n 1 16 LYS n 1 17 GLU n 1 18 LEU n 1 19 LYS n 1 20 GLU n 1 21 ALA n 1 22 LYS n 1 23 LYS n 1 24 GLU n 1 25 PHE n 1 26 GLU n 1 27 LYS n 1 28 ILE n 1 29 PHE n 1 30 ILE n 1 31 GLU n 1 32 GLU n 1 33 LYS n 1 34 LEU n 1 35 ARG n 1 36 GLU n 1 37 TYR n 1 38 ASP n 1 39 TYR n 1 40 ASP n 1 41 LEU n 1 42 LYS n 1 43 ARG n 1 44 THR n 1 45 ALA n 1 46 GLU n 1 47 GLU n 1 48 ILE n 1 49 GLY n 1 50 ILE n 1 51 ASP n 1 52 LEU n 1 53 SER n 1 54 ASN n 1 55 LEU n 1 56 TYR n 1 57 ARG n 1 58 LYS n 1 59 ILE n 1 60 LYS n 1 61 SER n 1 62 LEU n 1 63 ASN n 1 64 ILE n 1 65 ARG n 1 66 VAL n 1 67 LYS n 1 68 SER n 1 69 SER n 2 1 DA n 2 2 DC n 2 3 DT n 2 4 DT n 2 5 DG n 2 6 DC n 2 7 DA n 2 8 DA n 2 9 DA n 2 10 DT n 2 11 DT n 2 12 DT n 2 13 DG n 2 14 DC n 2 15 DA n 2 16 DA n 2 17 DA n 2 18 DT n 2 19 DG n 2 20 DC n 2 21 DA n 2 22 DT n 3 1 DG n 3 2 DA n 3 3 DT n 3 4 DG n 3 5 DC n 3 6 DA n 3 7 DT n 3 8 DT n 3 9 DT n 3 10 DG n 3 11 DC n 3 12 DA n 3 13 DA n 3 14 DA n 3 15 DT n 3 16 DT n 3 17 DT n 3 18 DG n 3 19 DC n 3 20 DA n 3 21 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'aq_164, ntrC4' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aquifex aeolicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 63363 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name Rosetta.pLysS _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP O66551_AQUAE O66551 1 LKEKSWRDLSYLLKIKELKEAKKEFEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSLNIRVKSS 374 ? 2 PDB 4FTH 4FTH 2 ? ? ? 3 PDB 4FTH 4FTH 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4FTH A 1 ? 69 ? O66551 374 ? 442 ? 11 79 2 1 4FTH B 1 ? 69 ? O66551 374 ? 442 ? 11 79 3 2 4FTH C 1 ? 22 ? 4FTH 0 ? 21 ? 0 21 4 3 4FTH D 1 ? 21 ? 4FTH 1 ? 21 ? 1 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4FTH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_percent_sol 48.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;30 mM Na-cacodylate pH 6.0, 140 mM spermidine, 50 mM potassium thiocyanate, and 15% (poly)ethylene glycol mw 400, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 77 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-04-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Khozu double flat crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.92 # _reflns.entry_id 4FTH _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 48.1 _reflns.d_resolution_high 3.0 _reflns.number_obs 5777 _reflns.number_all 5902 _reflns.percent_possible_obs 96.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.0 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 96.8 _reflns_shell.Rmerge_I_obs 0.063 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 15.5 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 5902 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4FTH _refine.ls_number_reflns_obs 5777 _refine.ls_number_reflns_all 5902 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 48.108 _refine.ls_d_res_high 3.004 _refine.ls_percent_reflns_obs 95.49 _refine.ls_R_factor_obs 0.2452 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2428 _refine.ls_R_factor_R_free 0.2644 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.69 _refine.ls_number_reflns_R_free 560 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -32.5754 _refine.aniso_B[2][2] 17.6015 _refine.aniso_B[3][3] 14.9739 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 1.6543 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.361 _refine.solvent_model_param_bsol 64.071 _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.89 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3E7L' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.50 _refine.pdbx_overall_phase_error 30.23 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1105 _refine_hist.pdbx_number_atoms_nucleic_acid 861 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 1967 _refine_hist.d_res_high 3.004 _refine_hist.d_res_low 48.108 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.004 ? ? 2082 ? 'X-RAY DIFFRACTION' f_angle_d 0.802 ? ? 2968 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 24.252 ? ? 872 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.043 ? ? 332 ? 'X-RAY DIFFRACTION' f_plane_restr 0.003 ? ? 223 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 3.0042 3.3065 1147 0.3251 85.00 0.3605 . . 117 . . . . 'X-RAY DIFFRACTION' . 3.3065 3.7848 1319 0.2666 98.00 0.2624 . . 139 . . . . 'X-RAY DIFFRACTION' . 3.7848 4.7677 1370 0.2322 100.00 0.2630 . . 138 . . . . 'X-RAY DIFFRACTION' . 4.7677 48.1139 1381 0.2219 99.00 0.2493 . . 166 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4FTH _struct.title 'Crystal Structure of NtrC4 DNA-binding domain bound to double-stranded DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4FTH _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR/DNA' _struct_keywords.text ;sigma-54, transcriptional activator, DNA-binding domain, NtrC, Fis, helix-turn-helix, DNA-binding, TRANSCRIPTION REGULATOR-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 17 ? TYR A 37 ? GLU A 27 TYR A 47 1 ? 21 HELX_P HELX_P2 2 ASP A 40 ? ILE A 48 ? ASP A 50 ILE A 58 1 ? 9 HELX_P HELX_P3 3 ASP A 51 ? LEU A 62 ? ASP A 61 LEU A 72 1 ? 12 HELX_P HELX_P4 4 GLU B 17 ? TYR B 37 ? GLU B 27 TYR B 47 1 ? 21 HELX_P HELX_P5 5 ASP B 40 ? ILE B 48 ? ASP B 50 ILE B 58 1 ? 9 HELX_P HELX_P6 6 ASP B 51 ? ASN B 63 ? ASP B 61 ASN B 73 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 21 N1 ? ? C DT 2 D DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 21 N6 ? ? C DT 2 D DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 20 N1 ? ? C DT 3 D DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 20 N6 ? ? C DT 3 D DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 19 N3 ? ? C DG 4 D DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 19 O2 ? ? C DG 4 D DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 19 N4 ? ? C DG 4 D DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 18 N1 ? ? C DC 5 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 18 O6 ? ? C DC 5 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 18 N2 ? ? C DC 5 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D DT 17 N3 ? ? C DA 6 D DT 17 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog12 hydrog ? ? C DA 8 N1 ? ? ? 1_555 D DT 16 N3 ? ? C DA 7 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DA 8 N6 ? ? ? 1_555 D DT 16 O4 ? ? C DA 7 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DA 9 N1 ? ? ? 1_555 D DT 15 N3 ? ? C DA 8 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DA 9 N6 ? ? ? 1_555 D DT 15 O4 ? ? C DA 8 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DT 10 N3 ? ? ? 1_555 D DA 14 N1 ? ? C DT 9 D DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DT 10 O4 ? ? ? 1_555 D DA 14 N6 ? ? C DT 9 D DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DT 11 N3 ? ? ? 1_555 D DA 13 N1 ? ? C DT 10 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DT 11 O4 ? ? ? 1_555 D DA 13 N6 ? ? C DT 10 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DT 12 N3 ? ? ? 1_555 D DA 12 N1 ? ? C DT 11 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DT 12 O4 ? ? ? 1_555 D DA 12 N6 ? ? C DT 11 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DG 13 N1 ? ? ? 1_555 D DC 11 N3 ? ? C DG 12 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DG 13 N2 ? ? ? 1_555 D DC 11 O2 ? ? C DG 12 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DG 13 O6 ? ? ? 1_555 D DC 11 N4 ? ? C DG 12 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DC 14 N3 ? ? ? 1_555 D DG 10 N1 ? ? C DC 13 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DC 14 N4 ? ? ? 1_555 D DG 10 O6 ? ? C DC 13 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DC 14 O2 ? ? ? 1_555 D DG 10 N2 ? ? C DC 13 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DA 15 N1 ? ? ? 1_555 D DT 9 N3 ? ? C DA 14 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DA 15 N6 ? ? ? 1_555 D DT 9 O4 ? ? C DA 14 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DA 16 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 15 D DT 8 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog31 hydrog ? ? C DA 17 N1 ? ? ? 1_555 D DT 7 N3 ? ? C DA 16 D DT 7 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog32 hydrog ? ? C DT 18 N3 ? ? ? 1_555 D DA 6 N1 ? ? C DT 17 D DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DT 18 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 17 D DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DG 19 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 18 D DC 5 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog35 hydrog ? ? C DC 20 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 19 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DC 20 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 19 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DC 20 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 19 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DA 21 N1 ? ? ? 1_555 D DT 3 N3 ? ? C DA 20 D DT 3 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog39 hydrog ? ? C DT 22 N3 ? ? ? 1_555 D DA 2 N1 ? ? C DT 21 D DA 2 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 4FTH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4FTH _atom_sites.fract_transf_matrix[1][1] 0.014829 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001179 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034725 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013388 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 11 11 LEU LEU A . n A 1 2 LYS 2 12 12 LYS LYS A . n A 1 3 GLU 3 13 13 GLU GLU A . n A 1 4 LYS 4 14 14 LYS LYS A . n A 1 5 SER 5 15 15 SER SER A . n A 1 6 TRP 6 16 16 TRP TRP A . n A 1 7 ARG 7 17 17 ARG ARG A . n A 1 8 ASP 8 18 18 ASP ASP A . n A 1 9 LEU 9 19 19 LEU LEU A . n A 1 10 SER 10 20 20 SER SER A . n A 1 11 TYR 11 21 21 TYR TYR A . n A 1 12 LEU 12 22 22 LEU LEU A . n A 1 13 LEU 13 23 23 LEU LEU A . n A 1 14 LYS 14 24 24 LYS LYS A . n A 1 15 ILE 15 25 25 ILE ILE A . n A 1 16 LYS 16 26 26 LYS LYS A . n A 1 17 GLU 17 27 27 GLU GLU A . n A 1 18 LEU 18 28 28 LEU LEU A . n A 1 19 LYS 19 29 29 LYS LYS A . n A 1 20 GLU 20 30 30 GLU GLU A . n A 1 21 ALA 21 31 31 ALA ALA A . n A 1 22 LYS 22 32 32 LYS LYS A . n A 1 23 LYS 23 33 33 LYS LYS A . n A 1 24 GLU 24 34 34 GLU GLU A . n A 1 25 PHE 25 35 35 PHE PHE A . n A 1 26 GLU 26 36 36 GLU GLU A . n A 1 27 LYS 27 37 37 LYS LYS A . n A 1 28 ILE 28 38 38 ILE ILE A . n A 1 29 PHE 29 39 39 PHE PHE A . n A 1 30 ILE 30 40 40 ILE ILE A . n A 1 31 GLU 31 41 41 GLU GLU A . n A 1 32 GLU 32 42 42 GLU GLU A . n A 1 33 LYS 33 43 43 LYS LYS A . n A 1 34 LEU 34 44 44 LEU LEU A . n A 1 35 ARG 35 45 45 ARG ARG A . n A 1 36 GLU 36 46 46 GLU GLU A . n A 1 37 TYR 37 47 47 TYR TYR A . n A 1 38 ASP 38 48 48 ASP ASP A . n A 1 39 TYR 39 49 49 TYR TYR A . n A 1 40 ASP 40 50 50 ASP ASP A . n A 1 41 LEU 41 51 51 LEU LEU A . n A 1 42 LYS 42 52 52 LYS LYS A . n A 1 43 ARG 43 53 53 ARG ARG A . n A 1 44 THR 44 54 54 THR THR A . n A 1 45 ALA 45 55 55 ALA ALA A . n A 1 46 GLU 46 56 56 GLU GLU A . n A 1 47 GLU 47 57 57 GLU GLU A . n A 1 48 ILE 48 58 58 ILE ILE A . n A 1 49 GLY 49 59 59 GLY GLY A . n A 1 50 ILE 50 60 60 ILE ILE A . n A 1 51 ASP 51 61 61 ASP ASP A . n A 1 52 LEU 52 62 62 LEU LEU A . n A 1 53 SER 53 63 63 SER SER A . n A 1 54 ASN 54 64 64 ASN ASN A . n A 1 55 LEU 55 65 65 LEU LEU A . n A 1 56 TYR 56 66 66 TYR TYR A . n A 1 57 ARG 57 67 67 ARG ARG A . n A 1 58 LYS 58 68 68 LYS LYS A . n A 1 59 ILE 59 69 69 ILE ILE A . n A 1 60 LYS 60 70 70 LYS LYS A . n A 1 61 SER 61 71 71 SER SER A . n A 1 62 LEU 62 72 72 LEU LEU A . n A 1 63 ASN 63 73 73 ASN ASN A . n A 1 64 ILE 64 74 74 ILE ILE A . n A 1 65 ARG 65 75 75 ARG ARG A . n A 1 66 VAL 66 76 76 VAL VAL A . n A 1 67 LYS 67 77 77 LYS LYS A . n A 1 68 SER 68 78 78 SER SER A . n A 1 69 SER 69 79 ? ? ? A . n B 1 1 LEU 1 11 ? ? ? B . n B 1 2 LYS 2 12 ? ? ? B . n B 1 3 GLU 3 13 ? ? ? B . n B 1 4 LYS 4 14 ? ? ? B . n B 1 5 SER 5 15 ? ? ? B . n B 1 6 TRP 6 16 ? ? ? B . n B 1 7 ARG 7 17 17 ARG ARG B . n B 1 8 ASP 8 18 18 ASP ASP B . n B 1 9 LEU 9 19 19 LEU LEU B . n B 1 10 SER 10 20 20 SER SER B . n B 1 11 TYR 11 21 21 TYR TYR B . n B 1 12 LEU 12 22 22 LEU LEU B . n B 1 13 LEU 13 23 23 LEU LEU B . n B 1 14 LYS 14 24 24 LYS LYS B . n B 1 15 ILE 15 25 25 ILE ILE B . n B 1 16 LYS 16 26 26 LYS LYS B . n B 1 17 GLU 17 27 27 GLU GLU B . n B 1 18 LEU 18 28 28 LEU LEU B . n B 1 19 LYS 19 29 29 LYS LYS B . n B 1 20 GLU 20 30 30 GLU GLU B . n B 1 21 ALA 21 31 31 ALA ALA B . n B 1 22 LYS 22 32 32 LYS LYS B . n B 1 23 LYS 23 33 33 LYS LYS B . n B 1 24 GLU 24 34 34 GLU GLU B . n B 1 25 PHE 25 35 35 PHE PHE B . n B 1 26 GLU 26 36 36 GLU GLU B . n B 1 27 LYS 27 37 37 LYS LYS B . n B 1 28 ILE 28 38 38 ILE ILE B . n B 1 29 PHE 29 39 39 PHE PHE B . n B 1 30 ILE 30 40 40 ILE ILE B . n B 1 31 GLU 31 41 41 GLU GLU B . n B 1 32 GLU 32 42 42 GLU GLU B . n B 1 33 LYS 33 43 43 LYS LYS B . n B 1 34 LEU 34 44 44 LEU LEU B . n B 1 35 ARG 35 45 45 ARG ARG B . n B 1 36 GLU 36 46 46 GLU GLU B . n B 1 37 TYR 37 47 47 TYR TYR B . n B 1 38 ASP 38 48 48 ASP ASP B . n B 1 39 TYR 39 49 49 TYR TYR B . n B 1 40 ASP 40 50 50 ASP ASP B . n B 1 41 LEU 41 51 51 LEU LEU B . n B 1 42 LYS 42 52 52 LYS LYS B . n B 1 43 ARG 43 53 53 ARG ARG B . n B 1 44 THR 44 54 54 THR THR B . n B 1 45 ALA 45 55 55 ALA ALA B . n B 1 46 GLU 46 56 56 GLU GLU B . n B 1 47 GLU 47 57 57 GLU GLU B . n B 1 48 ILE 48 58 58 ILE ILE B . n B 1 49 GLY 49 59 59 GLY GLY B . n B 1 50 ILE 50 60 60 ILE ILE B . n B 1 51 ASP 51 61 61 ASP ASP B . n B 1 52 LEU 52 62 62 LEU LEU B . n B 1 53 SER 53 63 63 SER SER B . n B 1 54 ASN 54 64 64 ASN ASN B . n B 1 55 LEU 55 65 65 LEU LEU B . n B 1 56 TYR 56 66 66 TYR TYR B . n B 1 57 ARG 57 67 67 ARG ARG B . n B 1 58 LYS 58 68 68 LYS LYS B . n B 1 59 ILE 59 69 69 ILE ILE B . n B 1 60 LYS 60 70 70 LYS LYS B . n B 1 61 SER 61 71 71 SER SER B . n B 1 62 LEU 62 72 72 LEU LEU B . n B 1 63 ASN 63 73 73 ASN ASN B . n B 1 64 ILE 64 74 74 ILE ILE B . n B 1 65 ARG 65 75 75 ARG ARG B . n B 1 66 VAL 66 76 76 VAL VAL B . n B 1 67 LYS 67 77 77 LYS LYS B . n B 1 68 SER 68 78 ? ? ? B . n B 1 69 SER 69 79 ? ? ? B . n C 2 1 DA 1 0 ? ? ? C . n C 2 2 DC 2 1 1 DC C C . n C 2 3 DT 3 2 2 DT T C . n C 2 4 DT 4 3 3 DT T C . n C 2 5 DG 5 4 4 DG G C . n C 2 6 DC 6 5 5 DC C C . n C 2 7 DA 7 6 6 DA A C . n C 2 8 DA 8 7 7 DA A C . n C 2 9 DA 9 8 8 DA A C . n C 2 10 DT 10 9 9 DT T C . n C 2 11 DT 11 10 10 DT T C . n C 2 12 DT 12 11 11 DT T C . n C 2 13 DG 13 12 12 DG G C . n C 2 14 DC 14 13 13 DC C C . n C 2 15 DA 15 14 14 DA A C . n C 2 16 DA 16 15 15 DA A C . n C 2 17 DA 17 16 16 DA A C . n C 2 18 DT 18 17 17 DT T C . n C 2 19 DG 19 18 18 DG G C . n C 2 20 DC 20 19 19 DC C C . n C 2 21 DA 21 20 20 DA A C . n C 2 22 DT 22 21 21 DT T C . n D 3 1 DG 1 1 1 DG G D . n D 3 2 DA 2 2 2 DA A D . n D 3 3 DT 3 3 3 DT T D . n D 3 4 DG 4 4 4 DG G D . n D 3 5 DC 5 5 5 DC C D . n D 3 6 DA 6 6 6 DA A D . n D 3 7 DT 7 7 7 DT T D . n D 3 8 DT 8 8 8 DT T D . n D 3 9 DT 9 9 9 DT T D . n D 3 10 DG 10 10 10 DG G D . n D 3 11 DC 11 11 11 DC C D . n D 3 12 DA 12 12 12 DA A D . n D 3 13 DA 13 13 13 DA A D . n D 3 14 DA 14 14 14 DA A D . n D 3 15 DT 15 15 15 DT T D . n D 3 16 DT 16 16 16 DT T D . n D 3 17 DT 17 17 17 DT T D . n D 3 18 DG 18 18 18 DG G D . n D 3 19 DC 19 19 19 DC C D . n D 3 20 DA 20 20 20 DA A D . n D 3 21 DA 21 21 21 DA A D . n # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id HOH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 2 _pdbx_nonpoly_scheme.pdb_mon_id HOH _pdbx_nonpoly_scheme.auth_mon_id HOH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6300 ? 1 MORE -36 ? 1 'SSA (A^2)' 14190 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-29 2 'Structure model' 1 1 2014-10-08 3 'Structure model' 1 2 2014-11-12 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.2_432)' ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 110.89 108.30 2.59 0.30 N 2 1 "O4'" C DA 8 ? ? "C1'" C DA 8 ? ? N9 C DA 8 ? ? 110.24 108.30 1.94 0.30 N 3 1 "O4'" C DC 19 ? ? "C1'" C DC 19 ? ? N1 C DC 19 ? ? 110.17 108.30 1.87 0.30 N 4 1 "O4'" C DT 21 ? ? "C1'" C DT 21 ? ? N1 C DT 21 ? ? 110.44 108.30 2.14 0.30 N 5 1 "C3'" D DA 6 ? ? "C2'" D DA 6 ? ? "C1'" D DA 6 ? ? 96.69 102.40 -5.71 0.80 N 6 1 "O4'" D DA 6 ? ? "C1'" D DA 6 ? ? N9 D DA 6 ? ? 110.32 108.30 2.02 0.30 N 7 1 "O4'" D DT 7 ? ? "C1'" D DT 7 ? ? N1 D DT 7 ? ? 110.25 108.30 1.95 0.30 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 14 ? CG ? A LYS 4 CG 2 1 Y 1 A LYS 14 ? CD ? A LYS 4 CD 3 1 Y 1 A LYS 14 ? CE ? A LYS 4 CE 4 1 Y 1 A LYS 14 ? NZ ? A LYS 4 NZ 5 1 Y 1 B ARG 17 ? CG ? B ARG 7 CG 6 1 Y 1 B ARG 17 ? CD ? B ARG 7 CD 7 1 Y 1 B ARG 17 ? NE ? B ARG 7 NE 8 1 Y 1 B ARG 17 ? CZ ? B ARG 7 CZ 9 1 Y 1 B ARG 17 ? NH1 ? B ARG 7 NH1 10 1 Y 1 B ARG 17 ? NH2 ? B ARG 7 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 79 ? A SER 69 2 1 Y 1 B LEU 11 ? B LEU 1 3 1 Y 1 B LYS 12 ? B LYS 2 4 1 Y 1 B GLU 13 ? B GLU 3 5 1 Y 1 B LYS 14 ? B LYS 4 6 1 Y 1 B SER 15 ? B SER 5 7 1 Y 1 B TRP 16 ? B TRP 6 8 1 Y 1 B SER 78 ? B SER 68 9 1 Y 1 B SER 79 ? B SER 69 10 1 Y 1 C DA 0 ? C DA 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLU N N N N 217 GLU CA C N S 218 GLU C C N N 219 GLU O O N N 220 GLU CB C N N 221 GLU CG C N N 222 GLU CD C N N 223 GLU OE1 O N N 224 GLU OE2 O N N 225 GLU OXT O N N 226 GLU H H N N 227 GLU H2 H N N 228 GLU HA H N N 229 GLU HB2 H N N 230 GLU HB3 H N N 231 GLU HG2 H N N 232 GLU HG3 H N N 233 GLU HE2 H N N 234 GLU HXT H N N 235 GLY N N N N 236 GLY CA C N N 237 GLY C C N N 238 GLY O O N N 239 GLY OXT O N N 240 GLY H H N N 241 GLY H2 H N N 242 GLY HA2 H N N 243 GLY HA3 H N N 244 GLY HXT H N N 245 HOH O O N N 246 HOH H1 H N N 247 HOH H2 H N N 248 ILE N N N N 249 ILE CA C N S 250 ILE C C N N 251 ILE O O N N 252 ILE CB C N S 253 ILE CG1 C N N 254 ILE CG2 C N N 255 ILE CD1 C N N 256 ILE OXT O N N 257 ILE H H N N 258 ILE H2 H N N 259 ILE HA H N N 260 ILE HB H N N 261 ILE HG12 H N N 262 ILE HG13 H N N 263 ILE HG21 H N N 264 ILE HG22 H N N 265 ILE HG23 H N N 266 ILE HD11 H N N 267 ILE HD12 H N N 268 ILE HD13 H N N 269 ILE HXT H N N 270 LEU N N N N 271 LEU CA C N S 272 LEU C C N N 273 LEU O O N N 274 LEU CB C N N 275 LEU CG C N N 276 LEU CD1 C N N 277 LEU CD2 C N N 278 LEU OXT O N N 279 LEU H H N N 280 LEU H2 H N N 281 LEU HA H N N 282 LEU HB2 H N N 283 LEU HB3 H N N 284 LEU HG H N N 285 LEU HD11 H N N 286 LEU HD12 H N N 287 LEU HD13 H N N 288 LEU HD21 H N N 289 LEU HD22 H N N 290 LEU HD23 H N N 291 LEU HXT H N N 292 LYS N N N N 293 LYS CA C N S 294 LYS C C N N 295 LYS O O N N 296 LYS CB C N N 297 LYS CG C N N 298 LYS CD C N N 299 LYS CE C N N 300 LYS NZ N N N 301 LYS OXT O N N 302 LYS H H N N 303 LYS H2 H N N 304 LYS HA H N N 305 LYS HB2 H N N 306 LYS HB3 H N N 307 LYS HG2 H N N 308 LYS HG3 H N N 309 LYS HD2 H N N 310 LYS HD3 H N N 311 LYS HE2 H N N 312 LYS HE3 H N N 313 LYS HZ1 H N N 314 LYS HZ2 H N N 315 LYS HZ3 H N N 316 LYS HXT H N N 317 PHE N N N N 318 PHE CA C N S 319 PHE C C N N 320 PHE O O N N 321 PHE CB C N N 322 PHE CG C Y N 323 PHE CD1 C Y N 324 PHE CD2 C Y N 325 PHE CE1 C Y N 326 PHE CE2 C Y N 327 PHE CZ C Y N 328 PHE OXT O N N 329 PHE H H N N 330 PHE H2 H N N 331 PHE HA H N N 332 PHE HB2 H N N 333 PHE HB3 H N N 334 PHE HD1 H N N 335 PHE HD2 H N N 336 PHE HE1 H N N 337 PHE HE2 H N N 338 PHE HZ H N N 339 PHE HXT H N N 340 SER N N N N 341 SER CA C N S 342 SER C C N N 343 SER O O N N 344 SER CB C N N 345 SER OG O N N 346 SER OXT O N N 347 SER H H N N 348 SER H2 H N N 349 SER HA H N N 350 SER HB2 H N N 351 SER HB3 H N N 352 SER HG H N N 353 SER HXT H N N 354 THR N N N N 355 THR CA C N S 356 THR C C N N 357 THR O O N N 358 THR CB C N R 359 THR OG1 O N N 360 THR CG2 C N N 361 THR OXT O N N 362 THR H H N N 363 THR H2 H N N 364 THR HA H N N 365 THR HB H N N 366 THR HG1 H N N 367 THR HG21 H N N 368 THR HG22 H N N 369 THR HG23 H N N 370 THR HXT H N N 371 TRP N N N N 372 TRP CA C N S 373 TRP C C N N 374 TRP O O N N 375 TRP CB C N N 376 TRP CG C Y N 377 TRP CD1 C Y N 378 TRP CD2 C Y N 379 TRP NE1 N Y N 380 TRP CE2 C Y N 381 TRP CE3 C Y N 382 TRP CZ2 C Y N 383 TRP CZ3 C Y N 384 TRP CH2 C Y N 385 TRP OXT O N N 386 TRP H H N N 387 TRP H2 H N N 388 TRP HA H N N 389 TRP HB2 H N N 390 TRP HB3 H N N 391 TRP HD1 H N N 392 TRP HE1 H N N 393 TRP HE3 H N N 394 TRP HZ2 H N N 395 TRP HZ3 H N N 396 TRP HH2 H N N 397 TRP HXT H N N 398 TYR N N N N 399 TYR CA C N S 400 TYR C C N N 401 TYR O O N N 402 TYR CB C N N 403 TYR CG C Y N 404 TYR CD1 C Y N 405 TYR CD2 C Y N 406 TYR CE1 C Y N 407 TYR CE2 C Y N 408 TYR CZ C Y N 409 TYR OH O N N 410 TYR OXT O N N 411 TYR H H N N 412 TYR H2 H N N 413 TYR HA H N N 414 TYR HB2 H N N 415 TYR HB3 H N N 416 TYR HD1 H N N 417 TYR HD2 H N N 418 TYR HE1 H N N 419 TYR HE2 H N N 420 TYR HH H N N 421 TYR HXT H N N 422 VAL N N N N 423 VAL CA C N S 424 VAL C C N N 425 VAL O O N N 426 VAL CB C N N 427 VAL CG1 C N N 428 VAL CG2 C N N 429 VAL OXT O N N 430 VAL H H N N 431 VAL H2 H N N 432 VAL HA H N N 433 VAL HB H N N 434 VAL HG11 H N N 435 VAL HG12 H N N 436 VAL HG13 H N N 437 VAL HG21 H N N 438 VAL HG22 H N N 439 VAL HG23 H N N 440 VAL HXT H N N 441 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLU N CA sing N N 219 GLU N H sing N N 220 GLU N H2 sing N N 221 GLU CA C sing N N 222 GLU CA CB sing N N 223 GLU CA HA sing N N 224 GLU C O doub N N 225 GLU C OXT sing N N 226 GLU CB CG sing N N 227 GLU CB HB2 sing N N 228 GLU CB HB3 sing N N 229 GLU CG CD sing N N 230 GLU CG HG2 sing N N 231 GLU CG HG3 sing N N 232 GLU CD OE1 doub N N 233 GLU CD OE2 sing N N 234 GLU OE2 HE2 sing N N 235 GLU OXT HXT sing N N 236 GLY N CA sing N N 237 GLY N H sing N N 238 GLY N H2 sing N N 239 GLY CA C sing N N 240 GLY CA HA2 sing N N 241 GLY CA HA3 sing N N 242 GLY C O doub N N 243 GLY C OXT sing N N 244 GLY OXT HXT sing N N 245 HOH O H1 sing N N 246 HOH O H2 sing N N 247 ILE N CA sing N N 248 ILE N H sing N N 249 ILE N H2 sing N N 250 ILE CA C sing N N 251 ILE CA CB sing N N 252 ILE CA HA sing N N 253 ILE C O doub N N 254 ILE C OXT sing N N 255 ILE CB CG1 sing N N 256 ILE CB CG2 sing N N 257 ILE CB HB sing N N 258 ILE CG1 CD1 sing N N 259 ILE CG1 HG12 sing N N 260 ILE CG1 HG13 sing N N 261 ILE CG2 HG21 sing N N 262 ILE CG2 HG22 sing N N 263 ILE CG2 HG23 sing N N 264 ILE CD1 HD11 sing N N 265 ILE CD1 HD12 sing N N 266 ILE CD1 HD13 sing N N 267 ILE OXT HXT sing N N 268 LEU N CA sing N N 269 LEU N H sing N N 270 LEU N H2 sing N N 271 LEU CA C sing N N 272 LEU CA CB sing N N 273 LEU CA HA sing N N 274 LEU C O doub N N 275 LEU C OXT sing N N 276 LEU CB CG sing N N 277 LEU CB HB2 sing N N 278 LEU CB HB3 sing N N 279 LEU CG CD1 sing N N 280 LEU CG CD2 sing N N 281 LEU CG HG sing N N 282 LEU CD1 HD11 sing N N 283 LEU CD1 HD12 sing N N 284 LEU CD1 HD13 sing N N 285 LEU CD2 HD21 sing N N 286 LEU CD2 HD22 sing N N 287 LEU CD2 HD23 sing N N 288 LEU OXT HXT sing N N 289 LYS N CA sing N N 290 LYS N H sing N N 291 LYS N H2 sing N N 292 LYS CA C sing N N 293 LYS CA CB sing N N 294 LYS CA HA sing N N 295 LYS C O doub N N 296 LYS C OXT sing N N 297 LYS CB CG sing N N 298 LYS CB HB2 sing N N 299 LYS CB HB3 sing N N 300 LYS CG CD sing N N 301 LYS CG HG2 sing N N 302 LYS CG HG3 sing N N 303 LYS CD CE sing N N 304 LYS CD HD2 sing N N 305 LYS CD HD3 sing N N 306 LYS CE NZ sing N N 307 LYS CE HE2 sing N N 308 LYS CE HE3 sing N N 309 LYS NZ HZ1 sing N N 310 LYS NZ HZ2 sing N N 311 LYS NZ HZ3 sing N N 312 LYS OXT HXT sing N N 313 PHE N CA sing N N 314 PHE N H sing N N 315 PHE N H2 sing N N 316 PHE CA C sing N N 317 PHE CA CB sing N N 318 PHE CA HA sing N N 319 PHE C O doub N N 320 PHE C OXT sing N N 321 PHE CB CG sing N N 322 PHE CB HB2 sing N N 323 PHE CB HB3 sing N N 324 PHE CG CD1 doub Y N 325 PHE CG CD2 sing Y N 326 PHE CD1 CE1 sing Y N 327 PHE CD1 HD1 sing N N 328 PHE CD2 CE2 doub Y N 329 PHE CD2 HD2 sing N N 330 PHE CE1 CZ doub Y N 331 PHE CE1 HE1 sing N N 332 PHE CE2 CZ sing Y N 333 PHE CE2 HE2 sing N N 334 PHE CZ HZ sing N N 335 PHE OXT HXT sing N N 336 SER N CA sing N N 337 SER N H sing N N 338 SER N H2 sing N N 339 SER CA C sing N N 340 SER CA CB sing N N 341 SER CA HA sing N N 342 SER C O doub N N 343 SER C OXT sing N N 344 SER CB OG sing N N 345 SER CB HB2 sing N N 346 SER CB HB3 sing N N 347 SER OG HG sing N N 348 SER OXT HXT sing N N 349 THR N CA sing N N 350 THR N H sing N N 351 THR N H2 sing N N 352 THR CA C sing N N 353 THR CA CB sing N N 354 THR CA HA sing N N 355 THR C O doub N N 356 THR C OXT sing N N 357 THR CB OG1 sing N N 358 THR CB CG2 sing N N 359 THR CB HB sing N N 360 THR OG1 HG1 sing N N 361 THR CG2 HG21 sing N N 362 THR CG2 HG22 sing N N 363 THR CG2 HG23 sing N N 364 THR OXT HXT sing N N 365 TRP N CA sing N N 366 TRP N H sing N N 367 TRP N H2 sing N N 368 TRP CA C sing N N 369 TRP CA CB sing N N 370 TRP CA HA sing N N 371 TRP C O doub N N 372 TRP C OXT sing N N 373 TRP CB CG sing N N 374 TRP CB HB2 sing N N 375 TRP CB HB3 sing N N 376 TRP CG CD1 doub Y N 377 TRP CG CD2 sing Y N 378 TRP CD1 NE1 sing Y N 379 TRP CD1 HD1 sing N N 380 TRP CD2 CE2 doub Y N 381 TRP CD2 CE3 sing Y N 382 TRP NE1 CE2 sing Y N 383 TRP NE1 HE1 sing N N 384 TRP CE2 CZ2 sing Y N 385 TRP CE3 CZ3 doub Y N 386 TRP CE3 HE3 sing N N 387 TRP CZ2 CH2 doub Y N 388 TRP CZ2 HZ2 sing N N 389 TRP CZ3 CH2 sing Y N 390 TRP CZ3 HZ3 sing N N 391 TRP CH2 HH2 sing N N 392 TRP OXT HXT sing N N 393 TYR N CA sing N N 394 TYR N H sing N N 395 TYR N H2 sing N N 396 TYR CA C sing N N 397 TYR CA CB sing N N 398 TYR CA HA sing N N 399 TYR C O doub N N 400 TYR C OXT sing N N 401 TYR CB CG sing N N 402 TYR CB HB2 sing N N 403 TYR CB HB3 sing N N 404 TYR CG CD1 doub Y N 405 TYR CG CD2 sing Y N 406 TYR CD1 CE1 sing Y N 407 TYR CD1 HD1 sing N N 408 TYR CD2 CE2 doub Y N 409 TYR CD2 HD2 sing N N 410 TYR CE1 CZ doub Y N 411 TYR CE1 HE1 sing N N 412 TYR CE2 CZ sing Y N 413 TYR CE2 HE2 sing N N 414 TYR CZ OH sing N N 415 TYR OH HH sing N N 416 TYR OXT HXT sing N N 417 VAL N CA sing N N 418 VAL N H sing N N 419 VAL N H2 sing N N 420 VAL CA C sing N N 421 VAL CA CB sing N N 422 VAL CA HA sing N N 423 VAL C O doub N N 424 VAL C OXT sing N N 425 VAL CB CG1 sing N N 426 VAL CB CG2 sing N N 427 VAL CB HB sing N N 428 VAL CG1 HG11 sing N N 429 VAL CG1 HG12 sing N N 430 VAL CG1 HG13 sing N N 431 VAL CG2 HG21 sing N N 432 VAL CG2 HG22 sing N N 433 VAL CG2 HG23 sing N N 434 VAL OXT HXT sing N N 435 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4FTH 'double helix' 4FTH 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DT 3 1_555 D DA 21 1_555 -0.210 -0.515 0.921 -5.678 -25.456 -2.827 1 C_DT2:DA21_D C 2 ? D 21 ? 20 1 1 C DT 4 1_555 D DA 20 1_555 0.768 -0.202 -0.032 0.761 -11.718 6.090 2 C_DT3:DA20_D C 3 ? D 20 ? 20 1 1 C DG 5 1_555 D DC 19 1_555 -0.070 -0.302 -0.962 -15.386 -13.280 4.238 3 C_DG4:DC19_D C 4 ? D 19 ? 19 1 1 C DC 6 1_555 D DG 18 1_555 -0.524 -0.044 -0.797 18.258 -9.081 -6.418 4 C_DC5:DG18_D C 5 ? D 18 ? 19 1 1 C DA 7 1_555 D DT 17 1_555 0.363 0.312 0.631 25.494 -23.254 9.567 5 C_DA6:DT17_D C 6 ? D 17 ? ? ? 1 C DA 8 1_555 D DT 16 1_555 -0.485 -0.114 0.305 17.196 -15.607 1.723 6 C_DA7:DT16_D C 7 ? D 16 ? 20 1 1 C DA 9 1_555 D DT 15 1_555 -0.640 -0.274 0.877 14.513 -15.250 1.803 7 C_DA8:DT15_D C 8 ? D 15 ? 20 1 1 C DT 10 1_555 D DA 14 1_555 -0.078 -0.376 0.687 2.331 -16.401 -4.030 8 C_DT9:DA14_D C 9 ? D 14 ? 20 1 1 C DT 11 1_555 D DA 13 1_555 0.043 -0.209 0.185 -7.331 -17.890 -0.570 9 C_DT10:DA13_D C 10 ? D 13 ? 20 1 1 C DT 12 1_555 D DA 12 1_555 0.229 -0.194 0.360 -20.693 -20.528 -3.889 10 C_DT11:DA12_D C 11 ? D 12 ? 20 1 1 C DG 13 1_555 D DC 11 1_555 0.142 -0.056 -0.422 -11.204 -8.212 -7.306 11 C_DG12:DC11_D C 12 ? D 11 ? 19 1 1 C DC 14 1_555 D DG 10 1_555 -0.366 -0.169 -0.100 4.786 -15.634 -2.797 12 C_DC13:DG10_D C 13 ? D 10 ? 19 1 1 C DA 15 1_555 D DT 9 1_555 -0.688 -0.383 -0.199 -6.050 -12.536 3.533 13 C_DA14:DT9_D C 14 ? D 9 ? 20 1 1 C DA 16 1_555 D DT 8 1_555 0.460 0.259 0.337 0.940 -22.768 15.105 14 C_DA15:DT8_D C 15 ? D 8 ? ? ? 1 C DA 17 1_555 D DT 7 1_555 1.446 0.173 0.357 0.796 -20.450 4.973 15 C_DA16:DT7_D C 16 ? D 7 ? ? ? 1 C DT 18 1_555 D DA 6 1_555 -0.562 -0.295 0.522 -6.385 -16.241 -0.799 16 C_DT17:DA6_D C 17 ? D 6 ? 20 1 1 C DG 19 1_555 D DC 5 1_555 0.706 0.190 -0.088 -4.852 -19.769 9.819 17 C_DG18:DC5_D C 18 ? D 5 ? ? 1 1 C DC 20 1_555 D DG 4 1_555 -0.331 -0.202 -0.739 16.984 -19.935 5.992 18 C_DC19:DG4_D C 19 ? D 4 ? 19 1 1 C DA 21 1_555 D DT 3 1_555 -1.213 0.012 0.057 -5.020 -20.139 6.166 19 C_DA20:DT3_D C 20 ? D 3 ? ? 1 1 C DT 22 1_555 D DA 2 1_555 -2.155 -0.306 0.971 1.283 -28.217 11.114 20 C_DT21:DA2_D C 21 ? D 2 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DT 3 1_555 D DA 21 1_555 C DT 4 1_555 D DA 20 1_555 -0.603 -0.517 3.184 4.755 -8.341 35.868 0.282 1.573 3.121 -13.254 -7.555 37.090 1 CC_DT2DT3:DA20DA21_DD C 2 ? D 21 ? C 3 ? D 20 ? 1 C DT 4 1_555 D DA 20 1_555 C DG 5 1_555 D DC 19 1_555 -0.733 0.628 3.747 2.652 9.983 33.646 -0.699 1.675 3.711 16.762 -4.453 35.152 2 CC_DT3DG4:DC19DA20_DD C 3 ? D 20 ? C 4 ? D 19 ? 1 C DG 5 1_555 D DC 19 1_555 C DC 6 1_555 D DG 18 1_555 -0.139 0.190 2.302 -1.849 3.300 20.447 -0.485 -0.182 2.306 9.195 5.151 20.791 3 CC_DG4DC5:DG18DC19_DD C 4 ? D 19 ? C 5 ? D 18 ? 1 C DC 6 1_555 D DG 18 1_555 C DA 7 1_555 D DT 17 1_555 0.581 0.845 3.224 -5.322 9.886 39.104 0.110 -1.433 3.233 14.413 7.759 40.624 4 CC_DC5DA6:DT17DG18_DD C 5 ? D 18 ? C 6 ? D 17 ? 1 C DA 7 1_555 D DT 17 1_555 C DA 8 1_555 D DT 16 1_555 -0.362 -0.319 3.333 -0.410 -2.148 33.004 -0.189 0.564 3.350 -3.777 0.721 33.074 5 CC_DA6DA7:DT16DT17_DD C 6 ? D 17 ? C 7 ? D 16 ? 1 C DA 8 1_555 D DT 16 1_555 C DA 9 1_555 D DT 15 1_555 0.316 -0.491 3.190 -6.824 -3.379 36.218 -0.331 -1.392 3.114 -5.362 10.829 36.984 6 CC_DA7DA8:DT15DT16_DD C 7 ? D 16 ? C 8 ? D 15 ? 1 C DA 9 1_555 D DT 15 1_555 C DT 10 1_555 D DA 14 1_555 -0.353 -1.054 3.661 1.398 -6.379 37.128 -0.686 0.754 3.769 -9.924 -2.175 37.678 7 CC_DA8DT9:DA14DT15_DD C 8 ? D 15 ? C 9 ? D 14 ? 1 C DT 10 1_555 D DA 14 1_555 C DT 11 1_555 D DA 13 1_555 0.261 -0.764 3.403 6.300 -0.881 37.577 -1.054 0.438 3.418 -1.356 -9.695 38.093 8 CC_DT9DT10:DA13DA14_DD C 9 ? D 14 ? C 10 ? D 13 ? 1 C DT 11 1_555 D DA 13 1_555 C DT 12 1_555 D DA 12 1_555 -0.238 -0.167 3.638 -0.497 -1.078 39.786 -0.106 0.286 3.644 -1.583 0.730 39.803 9 CC_DT10DT11:DA12DA13_DD C 10 ? D 13 ? C 11 ? D 12 ? 1 C DT 12 1_555 D DA 12 1_555 C DG 13 1_555 D DC 11 1_555 -0.165 0.576 3.232 3.796 4.730 33.491 0.231 0.887 3.243 8.125 -6.521 34.021 10 CC_DT11DG12:DC11DA12_DD C 11 ? D 12 ? C 12 ? D 11 ? 1 C DG 13 1_555 D DC 11 1_555 C DC 14 1_555 D DG 10 1_555 0.112 -0.151 2.887 -1.607 4.774 25.509 -1.487 -0.637 2.800 10.680 3.594 25.993 11 CC_DG12DC13:DG10DC11_DD C 12 ? D 11 ? C 13 ? D 10 ? 1 C DC 14 1_555 D DG 10 1_555 C DA 15 1_555 D DT 9 1_555 1.134 0.432 3.568 5.557 6.880 33.345 -0.482 -0.936 3.717 11.736 -9.478 34.465 12 CC_DC13DA14:DT9DG10_DD C 13 ? D 10 ? C 14 ? D 9 ? 1 C DA 15 1_555 D DT 9 1_555 C DA 16 1_555 D DT 8 1_555 0.410 0.125 3.007 -2.669 5.286 39.892 -0.366 -0.872 2.967 7.696 3.886 40.311 13 CC_DA14DA15:DT8DT9_DD C 14 ? D 9 ? C 15 ? D 8 ? 1 C DA 16 1_555 D DT 8 1_555 C DA 17 1_555 D DT 7 1_555 -0.379 -0.342 3.310 -2.737 -6.470 38.555 0.284 0.229 3.341 -9.701 4.104 39.166 14 CC_DA15DA16:DT7DT8_DD C 15 ? D 8 ? C 16 ? D 7 ? 1 C DA 17 1_555 D DT 7 1_555 C DT 18 1_555 D DA 6 1_555 0.009 -1.116 3.317 -1.379 -3.702 25.473 -1.426 -0.421 3.436 -8.332 3.103 25.773 15 CC_DA16DT17:DA6DT7_DD C 16 ? D 7 ? C 17 ? D 6 ? 1 C DT 18 1_555 D DA 6 1_555 C DG 19 1_555 D DC 5 1_555 0.587 0.175 3.373 5.092 5.739 40.939 -0.389 -0.263 3.412 8.119 -7.204 41.622 16 CC_DT17DG18:DC5DA6_DD C 17 ? D 6 ? C 18 ? D 5 ? 1 C DG 19 1_555 D DC 5 1_555 C DC 20 1_555 D DG 4 1_555 -0.169 -0.459 2.556 4.951 8.836 23.131 -2.995 1.477 2.155 20.804 -11.656 25.223 17 CC_DG18DC19:DG4DC5_DD C 18 ? D 5 ? C 19 ? D 4 ? 1 C DC 20 1_555 D DG 4 1_555 C DA 21 1_555 D DT 3 1_555 0.085 0.195 3.827 -9.773 11.755 25.451 -2.559 -2.612 3.346 24.108 20.042 29.624 18 CC_DC19DA20:DT3DG4_DD C 19 ? D 4 ? C 20 ? D 3 ? 1 C DA 21 1_555 D DT 3 1_555 C DT 22 1_555 D DA 2 1_555 0.541 -0.299 3.191 -6.047 -4.388 36.771 0.092 -1.608 3.081 -6.869 9.466 37.497 19 CC_DA20DT21:DA2DT3_DD C 20 ? D 3 ? C 21 ? D 2 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3E7L _pdbx_initial_refinement_model.details 'PDB ENTRY 3E7L' #