HEADER MEMBRANE PROTEIN 29-JUN-12 4FVG TITLE SPFH DOMAIN OF MOUSE STOMATIN (CRYSTAL FORM 3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: STOMATIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN 7.2B, ERYTHROCYTE BAND 7 INTEGRAL MEMBRANE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: EPB7.2, EPB72, STOM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3 PHAGE RESISTANT ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P1 KEYWDS MIXED ALPHA-BETA FOLD, MEMBRANE SCAFFOLD, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BRAND,D.SCHWEFEL,O.DAUMKE REVDAT 3 13-SEP-23 4FVG 1 REMARK SEQADV LINK REVDAT 2 31-OCT-12 4FVG 1 JRNL REVDAT 1 15-AUG-12 4FVG 0 JRNL AUTH J.BRAND,E.S.SMITH,D.SCHWEFEL,L.LAPATSINA,K.POOLE, JRNL AUTH 2 D.OMERBASIC,A.KOZLENKOV,J.BEHLKE,G.R.LEWIN,O.DAUMKE JRNL TITL A STOMATIN DIMER MODULATES THE ACTIVITY OF ACID-SENSING ION JRNL TITL 2 CHANNELS. JRNL REF EMBO J. V. 31 3635 2012 JRNL REFN ISSN 0261-4189 JRNL PMID 22850675 JRNL DOI 10.1038/EMBOJ.2012.203 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 13259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 704 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 942 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.013 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 885 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1211 ; 1.986 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 116 ; 5.830 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 39 ;36.951 ;24.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 155 ;12.377 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;14.344 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 150 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 662 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 568 ; 1.319 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 930 ; 1.967 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 317 ; 3.120 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 281 ; 4.727 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): -29.1036 -11.2819 -7.4685 REMARK 3 T TENSOR REMARK 3 T11: 0.5641 T22: 0.4738 REMARK 3 T33: 0.3276 T12: 0.1557 REMARK 3 T13: -0.0542 T23: 0.1628 REMARK 3 L TENSOR REMARK 3 L11: 18.7587 L22: 27.2480 REMARK 3 L33: 17.5829 L12: -0.9348 REMARK 3 L13: -5.8167 L23: -1.8091 REMARK 3 S TENSOR REMARK 3 S11: 0.4215 S12: -1.4310 S13: 0.5682 REMARK 3 S21: 0.9470 S22: 0.1507 S23: 0.9238 REMARK 3 S31: -1.3186 S32: -0.3247 S33: -0.5721 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2363 -16.4881 -0.9850 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.1186 REMARK 3 T33: 0.1917 T12: -0.0142 REMARK 3 T13: -0.0567 T23: 0.1103 REMARK 3 L TENSOR REMARK 3 L11: 11.0726 L22: 9.2225 REMARK 3 L33: 9.2200 L12: -5.2557 REMARK 3 L13: 4.1967 L23: -2.7957 REMARK 3 S TENSOR REMARK 3 S11: -0.1679 S12: 0.2595 S13: 0.8006 REMARK 3 S21: -0.0634 S22: 0.0725 S23: -0.4301 REMARK 3 S31: -0.5403 S32: 0.1044 S33: 0.0954 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6656 -27.0266 8.6505 REMARK 3 T TENSOR REMARK 3 T11: 0.0928 T22: 0.1977 REMARK 3 T33: 0.1925 T12: 0.0201 REMARK 3 T13: -0.0480 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 6.6660 L22: 4.6064 REMARK 3 L33: 8.0756 L12: -2.4081 REMARK 3 L13: 2.5173 L23: -1.7431 REMARK 3 S TENSOR REMARK 3 S11: 0.1041 S12: -0.1244 S13: -0.0194 REMARK 3 S21: 0.2022 S22: 0.0654 S23: 0.0582 REMARK 3 S31: -0.4298 S32: -0.2467 S33: -0.1695 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8489 -31.0631 5.0815 REMARK 3 T TENSOR REMARK 3 T11: 0.1985 T22: 0.2671 REMARK 3 T33: 0.2964 T12: 0.0370 REMARK 3 T13: -0.0622 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 11.1431 L22: 0.5265 REMARK 3 L33: 5.6621 L12: 3.1972 REMARK 3 L13: 4.3443 L23: 1.5683 REMARK 3 S TENSOR REMARK 3 S11: 0.1721 S12: 0.2279 S13: -0.5352 REMARK 3 S21: 0.0846 S22: 0.0120 S23: -0.1445 REMARK 3 S31: 0.0077 S32: 0.3792 S33: -0.1841 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 121 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): -25.0080 -18.4959 -5.5917 REMARK 3 T TENSOR REMARK 3 T11: 0.2227 T22: 0.2216 REMARK 3 T33: 0.1750 T12: 0.0585 REMARK 3 T13: -0.0893 T23: 0.1399 REMARK 3 L TENSOR REMARK 3 L11: 10.5918 L22: 6.7380 REMARK 3 L33: 8.3261 L12: -0.5425 REMARK 3 L13: 1.2296 L23: -0.6630 REMARK 3 S TENSOR REMARK 3 S11: 0.0442 S12: 0.4135 S13: 0.0200 REMARK 3 S21: -0.3671 S22: 0.0528 S23: 0.4319 REMARK 3 S31: -0.4862 S32: -0.4866 S33: -0.0970 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): -35.5221 -16.0714 4.7018 REMARK 3 T TENSOR REMARK 3 T11: 0.4258 T22: 0.8209 REMARK 3 T33: 0.6870 T12: 0.1696 REMARK 3 T13: 0.0289 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 6.6795 L22: 0.2925 REMARK 3 L33: 31.7672 L12: -0.4320 REMARK 3 L13: 8.5787 L23: -4.3403 REMARK 3 S TENSOR REMARK 3 S11: 0.1316 S12: -0.5481 S13: 1.0002 REMARK 3 S21: 0.1236 S22: 0.0820 S23: 0.2449 REMARK 3 S31: 0.2304 S32: -2.7639 S33: -0.2136 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 137 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): -23.9626 -18.1417 5.5315 REMARK 3 T TENSOR REMARK 3 T11: 0.3120 T22: 0.1261 REMARK 3 T33: 0.1786 T12: 0.0685 REMARK 3 T13: -0.0205 T23: 0.0670 REMARK 3 L TENSOR REMARK 3 L11: 7.5202 L22: 3.2140 REMARK 3 L33: 5.7810 L12: -0.8575 REMARK 3 L13: -0.3385 L23: 1.0204 REMARK 3 S TENSOR REMARK 3 S11: -0.0535 S12: -0.1528 S13: 0.5343 REMARK 3 S21: 0.2660 S22: 0.1251 S23: 0.2928 REMARK 3 S31: -1.0094 S32: -0.3372 S33: -0.0716 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 148 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): -16.1131 -29.0704 5.7689 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.1472 REMARK 3 T33: 0.1139 T12: 0.0086 REMARK 3 T13: -0.0538 T23: 0.0608 REMARK 3 L TENSOR REMARK 3 L11: 9.1408 L22: 12.9006 REMARK 3 L33: 5.2521 L12: -2.7576 REMARK 3 L13: 0.2382 L23: -1.3069 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: -0.1796 S13: -0.1598 REMARK 3 S21: 0.4374 S22: 0.0403 S23: -0.3302 REMARK 3 S31: -0.0116 S32: 0.1147 S33: -0.0531 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 163 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7157 -37.8467 1.5701 REMARK 3 T TENSOR REMARK 3 T11: 0.2619 T22: 0.3908 REMARK 3 T33: 0.5032 T12: 0.0316 REMARK 3 T13: -0.1371 T23: -0.1042 REMARK 3 L TENSOR REMARK 3 L11: 1.6409 L22: 6.5001 REMARK 3 L33: 7.3847 L12: -1.3605 REMARK 3 L13: -3.7721 L23: 3.6728 REMARK 3 S TENSOR REMARK 3 S11: -0.2689 S12: 0.1310 S13: -0.1303 REMARK 3 S21: 0.1356 S22: 0.2175 S23: -0.3272 REMARK 3 S31: 0.4788 S32: -0.0616 S33: 0.0514 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 164 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8123 -34.2320 -6.2295 REMARK 3 T TENSOR REMARK 3 T11: 0.3314 T22: 0.3887 REMARK 3 T33: 0.5658 T12: -0.0099 REMARK 3 T13: 0.0575 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 14.3606 L22: 2.1729 REMARK 3 L33: 14.6353 L12: -6.3867 REMARK 3 L13: 4.6362 L23: -2.2363 REMARK 3 S TENSOR REMARK 3 S11: 0.9636 S12: 0.5423 S13: -0.7246 REMARK 3 S21: -0.4113 S22: -0.1823 S23: 0.2474 REMARK 3 S31: -0.2441 S32: 0.6897 S33: -0.7812 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): -20.5141 -31.1844 -4.9841 REMARK 3 T TENSOR REMARK 3 T11: 0.1888 T22: 0.3517 REMARK 3 T33: 0.1440 T12: 0.0292 REMARK 3 T13: -0.0786 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.9527 L22: 8.5027 REMARK 3 L33: 18.5266 L12: -0.9196 REMARK 3 L13: -7.5546 L23: 2.7068 REMARK 3 S TENSOR REMARK 3 S11: -0.0897 S12: 0.2825 S13: -0.1115 REMARK 3 S21: -0.6044 S22: -0.1325 S23: -0.0771 REMARK 3 S31: 0.2492 S32: -0.4058 S33: 0.2222 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 177 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): -29.4516 -25.2678 1.4204 REMARK 3 T TENSOR REMARK 3 T11: 0.1002 T22: 0.1733 REMARK 3 T33: 0.1794 T12: 0.0169 REMARK 3 T13: -0.0321 T23: 0.0685 REMARK 3 L TENSOR REMARK 3 L11: 11.6238 L22: 6.4626 REMARK 3 L33: 4.9595 L12: -2.8705 REMARK 3 L13: -1.5127 L23: 0.6972 REMARK 3 S TENSOR REMARK 3 S11: 0.0523 S12: -0.0129 S13: 0.3268 REMARK 3 S21: -0.0103 S22: 0.0301 S23: 0.7286 REMARK 3 S31: -0.1354 S32: -0.5658 S33: -0.0824 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): -22.1085 -23.4178 -7.6476 REMARK 3 T TENSOR REMARK 3 T11: 0.4818 T22: 0.2467 REMARK 3 T33: 0.1648 T12: -0.0309 REMARK 3 T13: -0.1414 T23: 0.1464 REMARK 3 L TENSOR REMARK 3 L11: 25.8550 L22: 1.0110 REMARK 3 L33: 5.9181 L12: -4.4329 REMARK 3 L13: 1.1835 L23: 0.0135 REMARK 3 S TENSOR REMARK 3 S11: 0.3500 S12: 0.7896 S13: -0.0179 REMARK 3 S21: -0.4742 S22: -0.0817 S23: 0.1140 REMARK 3 S31: -0.3342 S32: -0.0287 S33: -0.2682 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): -2.6977 -25.5204 1.3133 REMARK 3 T TENSOR REMARK 3 T11: 0.1513 T22: 0.2300 REMARK 3 T33: 0.2650 T12: -0.0340 REMARK 3 T13: -0.0054 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 16.1075 L22: 2.4783 REMARK 3 L33: 14.0166 L12: -2.6550 REMARK 3 L13: 7.2833 L23: -2.7157 REMARK 3 S TENSOR REMARK 3 S11: -0.1738 S12: 0.0817 S13: 0.8256 REMARK 3 S21: 0.1331 S22: 0.0640 S23: -0.2648 REMARK 3 S31: -0.3826 S32: 0.5351 S33: 0.1098 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918410 REMARK 200 MONOCHROMATOR : SI111 DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16492 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 73.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 0.87100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4FVF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% ETHANOL, 0.02 CADMIUM SULFATE, 0.1 REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.97900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.95800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.97900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.95800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 22.97900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 45.95800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 22.97900 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.95800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 AUTHORS STATE THE BIOLOGICAL ASSEMBLY IS AN OLIGOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 439 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 81 REMARK 465 PRO A 82 REMARK 465 LEU A 83 REMARK 465 GLY A 84 REMARK 465 SER A 85 REMARK 465 PRO A 86 REMARK 465 SER A 87 REMARK 465 THR A 88 REMARK 465 ASP A 89 REMARK 465 SER A 90 REMARK 465 ALA A 91 REMARK 465 ALA A 92 REMARK 465 LYS A 93 REMARK 465 LEU A 203 REMARK 465 GLN A 204 REMARK 465 ARG A 205 REMARK 465 ALA A 206 REMARK 465 MET A 207 REMARK 465 ALA A 208 REMARK 465 ALA A 209 REMARK 465 GLU A 210 REMARK 465 ALA A 211 REMARK 465 GLU A 212 REMARK 465 ALA A 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 127 CG CD OE1 NE2 REMARK 470 THR A 130 OG1 CG2 REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 GLN A 202 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 106 O HOH A 495 1.93 REMARK 500 O HOH A 459 O HOH A 477 2.12 REMARK 500 OE1 GLN A 175 O HOH A 451 2.16 REMARK 500 O HOH A 462 O HOH A 476 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 196 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 112 32.13 -95.47 REMARK 500 LYS A 195 -126.58 -106.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 301 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 169 OE2 REMARK 620 2 GLU A 169 OE1 65.5 REMARK 620 3 HIS A 172 ND1 77.2 138.1 REMARK 620 4 HIS A 173 NE2 85.2 93.8 101.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 302 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 172 ND1 REMARK 620 2 HIS A 172 ND1 97.1 REMARK 620 3 HOH A 436 O 103.5 147.0 REMARK 620 4 HOH A 488 O 113.2 96.7 98.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FVF RELATED DB: PDB REMARK 900 ALTERNATIVE CRYSTAL FORM OF THE STOMATIN DIMER REMARK 900 RELATED ID: 4FVJ RELATED DB: PDB DBREF 4FVG A 86 213 UNP P54116 STOM_MOUSE 86 213 SEQADV 4FVG GLY A 81 UNP P54116 EXPRESSION TAG SEQADV 4FVG PRO A 82 UNP P54116 EXPRESSION TAG SEQADV 4FVG LEU A 83 UNP P54116 EXPRESSION TAG SEQADV 4FVG GLY A 84 UNP P54116 EXPRESSION TAG SEQADV 4FVG SER A 85 UNP P54116 EXPRESSION TAG SEQADV 4FVG SER A 87 UNP P54116 CYS 87 ENGINEERED MUTATION SEQADV 4FVG ALA A 91 UNP P54116 LEU 91 ENGINEERED MUTATION SEQADV 4FVG ALA A 92 UNP P54116 ILE 92 ENGINEERED MUTATION SEQRES 1 A 133 GLY PRO LEU GLY SER PRO SER THR ASP SER ALA ALA LYS SEQRES 2 A 133 VAL ASP MET ARG THR ILE SER PHE ASP ILE PRO PRO GLN SEQRES 3 A 133 GLU VAL LEU THR LYS ASP SER VAL THR ILE SER VAL ASP SEQRES 4 A 133 GLY VAL VAL TYR TYR ARG VAL GLN ASN ALA THR LEU ALA SEQRES 5 A 133 VAL ALA ASN ILE THR ASN ALA ASP SER ALA THR ARG LEU SEQRES 6 A 133 LEU ALA GLN THR THR LEU ARG ASN ALA LEU GLY THR LYS SEQRES 7 A 133 ASN LEU SER GLN ILE LEU SER ASP ARG GLU GLU ILE ALA SEQRES 8 A 133 HIS HIS MET GLN SER THR LEU ASP ASP ALA THR ASP ASP SEQRES 9 A 133 TRP GLY ILE LYS VAL GLU ARG VAL GLU ILE LYS ASP VAL SEQRES 10 A 133 LYS LEU PRO VAL GLN LEU GLN ARG ALA MET ALA ALA GLU SEQRES 11 A 133 ALA GLU ALA HET CD A 301 1 HET CD A 302 1 HETNAM CD CADMIUM ION FORMUL 2 CD 2(CD 2+) FORMUL 4 HOH *96(H2 O) HELIX 1 1 ASN A 128 ASN A 135 1 8 HELIX 2 2 ASN A 138 THR A 157 1 20 HELIX 3 3 ASN A 159 ASP A 166 1 8 HELIX 4 4 ASP A 166 ASP A 183 1 18 SHEET 1 A 3 ILE A 99 LEU A 109 0 SHEET 2 A 3 THR A 115 VAL A 126 -1 O TYR A 124 N ILE A 99 SHEET 3 A 3 ILE A 187 LYS A 198 -1 O LYS A 188 N ARG A 125 LINK OE2 GLU A 169 CD CD A 301 1555 1555 1.97 LINK OE1 GLU A 169 CD CD A 301 1555 1555 2.14 LINK ND1BHIS A 172 CD CD A 301 1555 1555 2.56 LINK ND1BHIS A 172 CD CD A 302 1555 1555 2.14 LINK ND1AHIS A 172 CD CD A 302 1555 1555 2.28 LINK NE2 HIS A 173 CD CD A 301 1555 1555 2.48 LINK CD CD A 302 O HOH A 436 1555 1555 2.67 LINK CD CD A 302 O HOH A 488 1555 1555 2.25 SITE 1 AC1 4 GLU A 169 HIS A 172 HIS A 173 CD A 302 SITE 1 AC2 5 GLU A 169 HIS A 172 CD A 301 HOH A 436 SITE 2 AC2 5 HOH A 488 CRYST1 84.489 84.489 68.937 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011836 0.006833 0.000000 0.00000 SCALE2 0.000000 0.013667 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014506 0.00000 CONECT 591 873 CONECT 592 873 CONECT 618 874 CONECT 619 873 874 CONECT 635 873 CONECT 873 591 592 619 635 CONECT 874 618 619 910 962 CONECT 910 874 CONECT 962 874 MASTER 658 0 2 4 3 0 3 6 932 1 9 11 END