HEADER HYDROLASE 02-JUL-12 4FWV TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE LON-LIKE PROTEASE TITLE 2 MTALONC COMPND MOL_ID: 1; COMPND 2 MOLECULE: TTC1975 PEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, UNP RESIDUES 35-387; COMPND 5 SYNONYM: LON-LIKE PROTEASE MTALONC; COMPND 6 EC: 3.4.21.53; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MEIOTHERMUS TAIWANENSIS; SOURCE 3 ORGANISM_TAXID: 172827; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS LON PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.I.CHANG,J.K.LI,C.I.KUO,K.F.HUANG REVDAT 2 12-MAR-14 4FWV 1 JRNL REVDAT 1 26-JUN-13 4FWV 0 JRNL AUTH J.K.LI,J.H.LIAO,H.LI,C.I.KUO,K.F.HUANG,L.W.YANG,S.H.WU, JRNL AUTH 2 C.I.CHANG JRNL TITL THE N-TERMINAL SUBSTRATE-RECOGNITION DOMAIN OF A LONC JRNL TITL 2 PROTEASE EXHIBITS STRUCTURAL AND FUNCTIONAL SIMILARITY TO JRNL TITL 3 CYTOSOLIC CHAPERONES JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1789 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23999302 JRNL DOI 10.1107/S090744491301500X REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1350 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1790 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.1700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2691 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.215 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.753 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2761 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3751 ; 1.518 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ; 7.100 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;36.665 ;22.687 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 440 ;19.184 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;22.519 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2143 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 585 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1702 ; 6.298 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 675 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2725 ; 9.065 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1067 ; 8.855 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1038 ;12.509 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4FWV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-AUG-12. REMARK 100 THE RCSB ID CODE IS RCSB073456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9639, 0.9789 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26977 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.92500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 400MM LITHIUM SULPHATE, 10MM NICKEL REMARK 280 CHLORIDE, 100MM TRIS-HCL, PH 8.4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 73.84150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.63241 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 54.61700 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 73.84150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 42.63241 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 54.61700 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 73.84150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 42.63241 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 54.61700 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 73.84150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 42.63241 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.61700 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 73.84150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 42.63241 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 54.61700 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 73.84150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 42.63241 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 54.61700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 85.26482 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 109.23400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 85.26482 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 109.23400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 85.26482 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 109.23400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 85.26482 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 109.23400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 85.26482 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 109.23400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 85.26482 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 109.23400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 73.84150 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -127.89723 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 147.68300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 147.68300 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -85.26482 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 54.61700 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 -85.26482 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 54.61700 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 73.84150 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 42.63241 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 54.61700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 534 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 33 REMARK 465 GLN A 34 REMARK 465 SER A 158 REMARK 465 THR A 159 REMARK 465 ASN A 160 REMARK 465 GLY A 161 REMARK 465 GLU A 162 REMARK 465 ARG A 163 REMARK 465 LEU A 164 REMARK 465 GLU A 165 REMARK 465 LEU A 166 REMARK 465 THR A 167 REMARK 465 GLY A 168 REMARK 465 PRO A 169 REMARK 465 SER A 387 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 48 CG HIS A 48 CD2 0.056 REMARK 500 GLU A 61 CB GLU A 61 CG 0.143 REMARK 500 GLU A 61 CG GLU A 61 CD 0.146 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 61 CB - CA - C ANGL. DEV. = 14.3 DEGREES REMARK 500 GLU A 61 OE1 - CD - OE2 ANGL. DEV. = -13.3 DEGREES REMARK 500 GLU A 61 CG - CD - OE2 ANGL. DEV. = 14.5 DEGREES REMARK 500 LEU A 79 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 148 36.57 -66.40 REMARK 500 ALA A 153 -85.32 -114.58 REMARK 500 VAL A 172 -165.12 -106.40 REMARK 500 PRO A 173 -82.64 -57.67 REMARK 500 ALA A 174 13.90 107.83 REMARK 500 GLU A 175 -0.29 75.41 REMARK 500 ALA A 272 54.48 -92.27 REMARK 500 ARG A 287 -121.68 63.75 REMARK 500 PRO A 344 30.91 -82.04 REMARK 500 GLN A 355 59.77 -146.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 46 PHE A 47 -145.69 REMARK 500 GLY A 321 THR A 322 -135.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 322 24.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 553 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH A 560 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH A 569 DISTANCE = 5.45 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FW9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LON-LIKE PROTEASE MTALONC REMARK 900 RELATED ID: 4FWD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LON-LIKE PROTEASE MTALONC IN REMARK 900 COMPLEX WITH BORTEZOMIB REMARK 900 RELATED ID: 4FWG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LON-LIKE PROTEASE MTALONC IN REMARK 900 COMPLEX WITH LACTACYSTIN REMARK 900 RELATED ID: 4FWH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LON-LIKE PROTEASE MTALONC IN REMARK 900 COMPLEX WITH MG262 DBREF 4FWV A 35 387 UNP C9DRU9 C9DRU9_9DEIN 35 387 SEQADV 4FWV GLY A 33 UNP C9DRU9 EXPRESSION TAG SEQADV 4FWV GLN A 34 UNP C9DRU9 EXPRESSION TAG SEQADV 4FWV MSE A 91 UNP C9DRU9 LEU 91 ENGINEERED MUTATION SEQADV 4FWV MSE A 188 UNP C9DRU9 LEU 188 ENGINEERED MUTATION SEQADV 4FWV MSE A 359 UNP C9DRU9 ILE 359 ENGINEERED MUTATION SEQRES 1 A 355 GLY GLN ALA ARG GLU ALA LEU GLU LEU ALA ILE ARG GLY SEQRES 2 A 355 GLY PHE HIS ALA TYR LEU VAL GLY PRO PRO SER LEU GLY SEQRES 3 A 355 LYS HIS GLU ALA LEU LEU ALA TYR LEU SER THR GLN SER SEQRES 4 A 355 VAL GLU THR PRO PRO ASP LEU LEU TYR VAL PRO LEU SER SEQRES 5 A 355 GLU ARG LYS VAL ALA VAL MSE THR LEU PRO SER GLY GLN SEQRES 6 A 355 GLU ILE HIS LEU ALA GLU ALA VAL GLU GLY LEU LEU LEU SEQRES 7 A 355 GLU VAL ASN ARG LEU ASP GLU LEU PHE ARG GLN GLY SER SEQRES 8 A 355 PHE LEU ARG GLU LYS THR GLN LEU GLU ALA ARG PHE LYS SEQRES 9 A 355 GLU ALA ARG GLU GLN GLN LEU GLU ALA LEU ARG ARG GLU SEQRES 10 A 355 ALA GLN GLU ALA GLY PHE ALA LEU SER THR ASN GLY GLU SEQRES 11 A 355 ARG LEU GLU LEU THR GLY PRO GLY PRO VAL PRO ALA GLU SEQRES 12 A 355 LEU SER ALA ARG LEU GLU GLU VAL THR LEU GLY SER MSE SEQRES 13 A 355 ALA ALA SER ALA GLU LEU GLU VAL ALA LEU ARG ARG LEU SEQRES 14 A 355 ARG ARG ASP TRP ALA LEU HIS TYR LEU ASN ASN ARG PHE SEQRES 15 A 355 GLU PRO LEU PHE GLN ARG PHE PRO GLN ALA ARG ALA TYR SEQRES 16 A 355 LEU GLU ALA LEU ARG ALA ARG LEU ALA ARG TYR ALA GLU SEQRES 17 A 355 THR GLY GLU PRO LEU ASP PRO ALA GLN TRP ARG PRO ASN SEQRES 18 A 355 LEU LEU THR SER SER SER SER GLY THR PRO PRO PRO ILE SEQRES 19 A 355 VAL TYR GLU PRO TYR ALA THR ALA PRO ARG LEU PHE GLY SEQRES 20 A 355 ARG LEU ASP TYR LEU VAL ASP ARG GLY VAL TRP SER THR SEQRES 21 A 355 ASN VAL SER LEU ILE ARG PRO GLY ALA VAL HIS ARG ALA SEQRES 22 A 355 GLN GLY GLY TYR LEU ILE LEU ASP ALA LEU SER LEU LYS SEQRES 23 A 355 ARG GLU GLY THR TRP GLU ALA PHE LYS ARG ALA LEU ARG SEQRES 24 A 355 ASN GLY GLN VAL GLU PRO VAL THR GLU PRO GLN ALA PRO SEQRES 25 A 355 ALA GLY LEU GLU VAL GLU PRO PHE PRO ILE GLN MSE GLN SEQRES 26 A 355 VAL MSE LEU VAL GLY THR PRO GLU ALA PHE GLU GLY LEU SEQRES 27 A 355 GLU GLU ASP PRO ALA PHE SER GLU LEU PHE ARG ILE ARG SEQRES 28 A 355 ALA GLU PHE SER MODRES 4FWV MSE A 91 MET SELENOMETHIONINE MODRES 4FWV MSE A 188 MET SELENOMETHIONINE MODRES 4FWV MSE A 356 MET SELENOMETHIONINE MODRES 4FWV MSE A 359 MET SELENOMETHIONINE HET MSE A 91 8 HET MSE A 188 8 HET MSE A 356 8 HET MSE A 359 8 HET SO4 A 401 5 HET SO4 A 402 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *70(H2 O) HELIX 1 1 ALA A 35 GLY A 45 1 11 HELIX 2 2 GLY A 58 SER A 68 1 11 HELIX 3 3 GLN A 97 LEU A 110 1 14 HELIX 4 4 LEU A 110 PHE A 119 1 10 HELIX 5 5 GLN A 121 ARG A 148 1 28 HELIX 6 6 LEU A 176 PHE A 221 1 46 HELIX 7 7 ALA A 224 GLY A 242 1 19 HELIX 8 8 ASP A 246 ARG A 251 1 6 HELIX 9 9 THR A 273 GLY A 279 1 7 HELIX 10 10 ASN A 293 SER A 295 5 3 HELIX 11 11 GLY A 300 ALA A 305 1 6 HELIX 12 12 ALA A 314 GLU A 320 1 7 HELIX 13 13 THR A 322 GLY A 333 1 12 HELIX 14 14 THR A 363 GLU A 372 1 10 HELIX 15 15 ASP A 373 PHE A 380 1 8 SHEET 1 A 5 ILE A 266 GLU A 269 0 SHEET 2 A 5 TYR A 309 ASP A 313 1 O ILE A 311 N VAL A 267 SHEET 3 A 5 GLN A 357 GLY A 362 1 O MSE A 359 N LEU A 310 SHEET 4 A 5 ALA A 49 VAL A 52 1 N LEU A 51 O LEU A 360 SHEET 5 A 5 ILE A 382 GLU A 385 1 O ALA A 384 N VAL A 52 SHEET 1 B 3 ASP A 77 PRO A 82 0 SHEET 2 B 3 LYS A 87 LEU A 93 -1 O ALA A 89 N VAL A 81 SHEET 3 B 3 GLU A 348 VAL A 349 1 O GLU A 348 N VAL A 88 SHEET 1 C 2 ARG A 280 LEU A 281 0 SHEET 2 C 2 ILE A 297 ARG A 298 -1 O ARG A 298 N ARG A 280 SHEET 1 D 2 LEU A 284 ASP A 286 0 SHEET 2 D 2 VAL A 289 SER A 291 -1 O SER A 291 N LEU A 284 SHEET 1 E 2 GLN A 334 VAL A 335 0 SHEET 2 E 2 PHE A 352 PRO A 353 -1 O PHE A 352 N VAL A 335 LINK C VAL A 90 N MSE A 91 1555 1555 1.32 LINK C MSE A 91 N THR A 92 1555 1555 1.33 LINK C SER A 187 N MSE A 188 1555 1555 1.33 LINK C MSE A 188 N ALA A 189 1555 1555 1.33 LINK C GLN A 355 N MSE A 356 1555 1555 1.31 LINK C MSE A 356 N GLN A 357 1555 1555 1.32 LINK C VAL A 358 N MSE A 359 1555 1555 1.34 LINK C MSE A 359 N LEU A 360 1555 1555 1.33 CISPEP 1 GLY A 170 PRO A 171 0 -9.65 CISPEP 2 PRO A 171 VAL A 172 0 6.08 CISPEP 3 THR A 262 PRO A 263 0 -7.47 SITE 1 AC1 8 SER A 56 LEU A 57 GLY A 58 LYS A 59 SITE 2 AC1 8 HIS A 60 ARG A 319 VAL A 361 HOH A 536 SITE 1 AC2 3 THR A 256 SER A 257 ARG A 304 CRYST1 147.683 147.683 163.851 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006771 0.003909 0.000000 0.00000 SCALE2 0.000000 0.007819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006103 0.00000