data_4FXM # _entry.id 4FXM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4FXM pdb_00004fxm 10.2210/pdb4fxm/pdb NDB NA1898 ? ? RCSB RCSB073480 ? ? WWPDB D_1000073480 ? ? # _pdbx_database_status.entry_id 4FXM _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-07-03 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nicoludis, J.M.' 1 'Miller, S.T.' 2 'Jeffrey, P.' 3 'Lawton, T.J.' 4 'Rosenzweig, A.C.' 5 'Yatsunyk, L.A.' 6 # _citation.id primary _citation.title 'Optimized End-Stacking Provides Specificity of N-Methyl Mesoporphyrin IX for Human Telomeric G-Quadruplex DNA.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 134 _citation.page_first 20446 _citation.page_last 20456 _citation.year 2012 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23181361 _citation.pdbx_database_id_DOI 10.1021/ja3088746 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nicoludis, J.M.' 1 ? primary 'Miller, S.T.' 2 ? primary 'Jeffrey, P.D.' 3 ? primary 'Barrett, S.P.' 4 ? primary 'Rablen, P.R.' 5 ? primary 'Lawton, T.J.' 6 ? primary 'Yatsunyk, L.A.' 7 ? # _cell.length_a 50.755 _cell.length_b 41.980 _cell.length_c 42.384 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4FXM _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 4FXM _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 18 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3') ; 6983.497 1 ? ? ? 'Human telomeric repeat sequence, Tel22' 2 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 3 non-polymer syn N-METHYLMESOPORPHYRIN 580.716 1 ? ? ? ? 4 water nat water 18.015 53 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG) (DG)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can AGGGTTAGGGTTAGGGTTAGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DT n 1 7 DA n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DT n 1 12 DT n 1 13 DA n 1 14 DG n 1 15 DG n 1 16 DG n 1 17 DT n 1 18 DT n 1 19 DA n 1 20 DG n 1 21 DG n 1 22 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'This sequence occurs naturally in humans.' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4FXM _struct_ref.pdbx_db_accession 4FXM _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4FXM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4FXM _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 22 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MMP non-polymer . N-METHYLMESOPORPHYRIN ? 'C35 H40 N4 O4' 580.716 # _exptl.crystals_number 1 _exptl.entry_id 4FXM _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.23 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 61.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;15% PEG 400, 0.4M ammonium sulfate, 0.05M lithium cacodylate, 0.05M potassium chloride, 0.01M calcium chloride, , pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-04-24 _diffrn_detector.details ;Cryogenically cooled double crystal monochrometer with horizontal focusing sagittal bend second mono crystal with 4:1 magnification ratio and vertically focusing mirror. ; # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double crystal monochrometer' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0750 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength_list 1.0750 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 4FXM _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.65 _reflns.d_resolution_low 42.38 _reflns.number_all 11379 _reflns.number_obs 11364 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 2.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.74 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.462 _reflns_shell.meanI_over_sigI_obs 2.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 6.3 _reflns_shell.number_unique_all 1638 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4FXM _refine.ls_d_res_high 1.6510 _refine.ls_d_res_low 42.3800 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8300 _refine.ls_number_reflns_obs 10820 _refine.ls_number_reflns_all 10820 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all 0.22389 _refine.ls_R_factor_obs 0.22389 _refine.ls_R_factor_R_work 0.2221 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2616 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 544 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 34.1048 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.0200 _refine.aniso_B[2][2] -0.0200 _refine.aniso_B[3][3] -0.0000 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9580 _refine.correlation_coeff_Fo_to_Fc_free 0.9470 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0960 _refine.pdbx_overall_ESU_R_Free 0.1010 _refine.overall_SU_ML 0.0640 _refine.overall_SU_B 1.8710 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3T5E' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 116.650 _refine.B_iso_min 15.390 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I 0.0 _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 465 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 53 _refine_hist.number_atoms_total 564 _refine_hist.d_res_high 1.6510 _refine_hist.d_res_low 42.3800 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 571 0.020 0.011 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 882 3.668 1.463 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 67 0.420 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 296 0.026 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.6510 _refine_ls_shell.d_res_low 1.6940 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.3400 _refine_ls_shell.number_reflns_R_work 714 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3470 _refine_ls_shell.R_factor_R_free 0.3050 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 748 _refine_ls_shell.number_reflns_obs 748 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4FXM _struct.title 'Crystal structure of the complex of a human telomeric repeat G-quadruplex and N-methyl mesoporphyrin IX (P21212)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4FXM _struct_keywords.text 'Parallel quadruplex, N-methyl mesoporphyrin IX, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 2 O6 ? ? ? 1_555 B K . K ? ? A DG 2 A K 101 1_555 ? ? ? ? ? ? ? 2.812 ? ? metalc2 metalc ? ? A DG 2 O6 ? ? ? 1_555 D K . K ? ? A DG 2 A K 103 1_555 ? ? ? ? ? ? ? 2.507 ? ? metalc3 metalc ? ? A DG 3 O6 ? ? ? 1_555 B K . K ? ? A DG 3 A K 101 1_555 ? ? ? ? ? ? ? 2.730 ? ? metalc4 metalc ? ? A DG 3 O6 ? ? ? 1_555 C K . K ? ? A DG 3 A K 102 1_555 ? ? ? ? ? ? ? 2.939 ? ? metalc5 metalc ? ? A DG 4 O6 ? ? ? 1_555 C K . K ? ? A DG 4 A K 102 1_555 ? ? ? ? ? ? ? 2.687 ? ? metalc6 metalc ? ? A DG 8 O6 ? ? ? 1_555 B K . K ? ? A DG 8 A K 101 1_555 ? ? ? ? ? ? ? 2.799 ? ? metalc7 metalc ? ? A DG 8 O6 ? ? ? 1_555 D K . K ? ? A DG 8 A K 103 1_555 ? ? ? ? ? ? ? 2.679 ? ? metalc8 metalc ? ? A DG 9 O6 ? ? ? 1_555 B K . K ? ? A DG 9 A K 101 1_555 ? ? ? ? ? ? ? 2.708 ? ? metalc9 metalc ? ? A DG 9 O6 ? ? ? 1_555 C K . K ? ? A DG 9 A K 102 1_555 ? ? ? ? ? ? ? 2.934 ? ? metalc10 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 10 A K 102 1_555 ? ? ? ? ? ? ? 2.699 ? ? metalc11 metalc ? ? A DG 14 O6 ? ? ? 1_555 B K . K ? ? A DG 14 A K 101 1_555 ? ? ? ? ? ? ? 2.833 ? ? metalc12 metalc ? ? A DG 14 O6 ? ? ? 1_555 D K . K ? ? A DG 14 A K 103 1_555 ? ? ? ? ? ? ? 2.703 ? ? metalc13 metalc ? ? A DG 15 O6 ? ? ? 1_555 B K . K ? ? A DG 15 A K 101 1_555 ? ? ? ? ? ? ? 2.695 ? ? metalc14 metalc ? ? A DG 15 O6 ? ? ? 1_555 C K . K ? ? A DG 15 A K 102 1_555 ? ? ? ? ? ? ? 2.930 ? ? metalc15 metalc ? ? A DG 16 O6 ? ? ? 1_555 C K . K ? ? A DG 16 A K 102 1_555 ? ? ? ? ? ? ? 2.719 ? ? metalc16 metalc ? ? A DG 20 O6 ? ? ? 1_555 B K . K ? ? A DG 20 A K 101 1_555 ? ? ? ? ? ? ? 2.808 ? ? metalc17 metalc ? ? A DG 20 O6 ? ? ? 1_555 D K . K ? ? A DG 20 A K 103 1_555 ? ? ? ? ? ? ? 2.529 ? ? metalc18 metalc ? ? A DG 21 O6 ? ? ? 1_555 B K . K ? ? A DG 21 A K 101 1_555 ? ? ? ? ? ? ? 2.727 ? ? metalc19 metalc ? ? A DG 21 O6 ? ? ? 1_555 C K . K ? ? A DG 21 A K 102 1_555 ? ? ? ? ? ? ? 2.910 ? ? metalc20 metalc ? ? A DG 22 O6 ? ? ? 1_555 C K . K ? ? A DG 22 A K 102 1_555 ? ? ? ? ? ? ? 2.757 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 2 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 2 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 20 N2 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 20 N1 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 21 N2 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 21 N1 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 22 N2 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 22 N1 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 8 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 8 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 16 O6 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 16 N7 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 14 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 14 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 21 O6 ? ? A DG 15 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 21 N7 ? ? A DG 15 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DG 22 O6 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DG 22 N7 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 101 ? 11 'BINDING SITE FOR RESIDUE K A 101' AC2 Software A K 102 ? 10 'BINDING SITE FOR RESIDUE K A 102' AC3 Software A K 103 ? 10 'BINDING SITE FOR RESIDUE K A 103' AC4 Software A MMP 104 ? 10 'BINDING SITE FOR RESIDUE MMP A 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 DG A 2 ? DG A 2 . ? 1_555 ? 2 AC1 11 DG A 3 ? DG A 3 . ? 1_555 ? 3 AC1 11 DG A 8 ? DG A 8 . ? 1_555 ? 4 AC1 11 DG A 9 ? DG A 9 . ? 1_555 ? 5 AC1 11 DG A 14 ? DG A 14 . ? 1_555 ? 6 AC1 11 DG A 15 ? DG A 15 . ? 1_555 ? 7 AC1 11 DG A 20 ? DG A 20 . ? 1_555 ? 8 AC1 11 DG A 21 ? DG A 21 . ? 1_555 ? 9 AC1 11 K C . ? K A 102 . ? 1_555 ? 10 AC1 11 K D . ? K A 103 . ? 1_555 ? 11 AC1 11 K D . ? K A 103 . ? 2_555 ? 12 AC2 10 DG A 3 ? DG A 3 . ? 1_555 ? 13 AC2 10 DG A 4 ? DG A 4 . ? 1_555 ? 14 AC2 10 DG A 9 ? DG A 9 . ? 1_555 ? 15 AC2 10 DG A 10 ? DG A 10 . ? 1_555 ? 16 AC2 10 DG A 15 ? DG A 15 . ? 1_555 ? 17 AC2 10 DG A 16 ? DG A 16 . ? 1_555 ? 18 AC2 10 DG A 21 ? DG A 21 . ? 1_555 ? 19 AC2 10 DG A 22 ? DG A 22 . ? 1_555 ? 20 AC2 10 K B . ? K A 101 . ? 1_555 ? 21 AC2 10 MMP E . ? MMP A 104 . ? 1_555 ? 22 AC3 10 DG A 2 ? DG A 2 . ? 2_555 ? 23 AC3 10 DG A 2 ? DG A 2 . ? 1_555 ? 24 AC3 10 DG A 8 ? DG A 8 . ? 2_555 ? 25 AC3 10 DG A 8 ? DG A 8 . ? 1_555 ? 26 AC3 10 DG A 14 ? DG A 14 . ? 1_555 ? 27 AC3 10 DG A 14 ? DG A 14 . ? 2_555 ? 28 AC3 10 DG A 20 ? DG A 20 . ? 2_555 ? 29 AC3 10 DG A 20 ? DG A 20 . ? 1_555 ? 30 AC3 10 K B . ? K A 101 . ? 2_555 ? 31 AC3 10 K B . ? K A 101 . ? 1_555 ? 32 AC4 10 DA A 1 ? DA A 1 . ? 4_455 ? 33 AC4 10 DG A 3 ? DG A 3 . ? 1_555 ? 34 AC4 10 DG A 4 ? DG A 4 . ? 1_555 ? 35 AC4 10 DG A 10 ? DG A 10 . ? 1_555 ? 36 AC4 10 DT A 12 ? DT A 12 . ? 3_455 ? 37 AC4 10 DG A 16 ? DG A 16 . ? 1_555 ? 38 AC4 10 DG A 22 ? DG A 22 . ? 1_555 ? 39 AC4 10 K C . ? K A 102 . ? 1_555 ? 40 AC4 10 HOH F . ? HOH A 201 . ? 1_555 ? 41 AC4 10 HOH F . ? HOH A 242 . ? 1_555 ? # _atom_sites.entry_id 4FXM _atom_sites.fract_transf_matrix[1][1] 0.019702 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023821 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023594 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DA 13 13 13 DA DA A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DT 17 17 17 DT DT A . n A 1 18 DT 18 18 18 DT DT A . n A 1 19 DA 19 19 19 DA DA A . n A 1 20 DG 20 20 20 DG DG A . n A 1 21 DG 21 21 21 DG DG A . n A 1 22 DG 22 22 22 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 101 1 K K A . C 2 K 1 102 2 K K A . D 2 K 1 103 3 K K A . E 3 MMP 1 104 1 MMP MMP A . F 4 HOH 1 201 1 HOH HOH A . F 4 HOH 2 202 2 HOH HOH A . F 4 HOH 3 203 3 HOH HOH A . F 4 HOH 4 204 4 HOH HOH A . F 4 HOH 5 205 5 HOH HOH A . F 4 HOH 6 206 6 HOH HOH A . F 4 HOH 7 207 7 HOH HOH A . F 4 HOH 8 208 8 HOH HOH A . F 4 HOH 9 209 9 HOH HOH A . F 4 HOH 10 210 10 HOH HOH A . F 4 HOH 11 211 11 HOH HOH A . F 4 HOH 12 212 12 HOH HOH A . F 4 HOH 13 213 13 HOH HOH A . F 4 HOH 14 214 14 HOH HOH A . F 4 HOH 15 215 15 HOH HOH A . F 4 HOH 16 216 16 HOH HOH A . F 4 HOH 17 217 17 HOH HOH A . F 4 HOH 18 218 18 HOH HOH A . F 4 HOH 19 219 19 HOH HOH A . F 4 HOH 20 220 20 HOH HOH A . F 4 HOH 21 221 21 HOH HOH A . F 4 HOH 22 222 22 HOH HOH A . F 4 HOH 23 223 23 HOH HOH A . F 4 HOH 24 224 24 HOH HOH A . F 4 HOH 25 225 25 HOH HOH A . F 4 HOH 26 226 26 HOH HOH A . F 4 HOH 27 227 27 HOH HOH A . F 4 HOH 28 228 28 HOH HOH A . F 4 HOH 29 229 29 HOH HOH A . F 4 HOH 30 230 30 HOH HOH A . F 4 HOH 31 231 31 HOH HOH A . F 4 HOH 32 232 32 HOH HOH A . F 4 HOH 33 233 33 HOH HOH A . F 4 HOH 34 234 34 HOH HOH A . F 4 HOH 35 235 35 HOH HOH A . F 4 HOH 36 236 36 HOH HOH A . F 4 HOH 37 237 37 HOH HOH A . F 4 HOH 38 238 38 HOH HOH A . F 4 HOH 39 239 39 HOH HOH A . F 4 HOH 40 240 40 HOH HOH A . F 4 HOH 41 241 41 HOH HOH A . F 4 HOH 42 242 42 HOH HOH A . F 4 HOH 43 243 43 HOH HOH A . F 4 HOH 44 244 44 HOH HOH A . F 4 HOH 45 245 45 HOH HOH A . F 4 HOH 46 246 46 HOH HOH A . F 4 HOH 47 247 47 HOH HOH A . F 4 HOH 48 248 48 HOH HOH A . F 4 HOH 49 249 49 HOH HOH A . F 4 HOH 50 250 50 HOH HOH A . F 4 HOH 51 251 51 HOH HOH A . F 4 HOH 52 252 52 HOH HOH A . F 4 HOH 53 253 53 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 206 ? F HOH . 2 1 A HOH 233 ? F HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 75.6 ? 2 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 68.2 ? 3 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 90.1 ? 4 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 129.6 ? 5 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 71.3 ? 6 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 74.9 ? 7 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 106.2 ? 8 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 155.4 ? 9 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 68.9 ? 10 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 90.5 ? 11 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 156.2 ? 12 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 113.0 ? 13 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 131.4 ? 14 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 73.5 ? 15 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 75.4 ? 16 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 69.9 ? 17 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 131.9 ? 18 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 106.5 ? 19 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 156.2 ? 20 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 68.9 ? 21 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 89.5 ? 22 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 91.0 ? 23 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 71.4 ? 24 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 155.3 ? 25 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 112.4 ? 26 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 132.3 ? 27 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 72.3 ? 28 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 76.6 ? 29 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 74.6 ? 30 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 120.1 ? 31 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 72.6 ? 32 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 79.5 ? 33 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 119.2 ? 34 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 75.0 ? 35 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 70.8 ? 36 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 65.3 ? 37 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 88.5 ? 38 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 126.5 ? 39 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 77.3 ? 40 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 72.2 ? 41 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 100.8 ? 42 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 155.1 ? 43 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 66.9 ? 44 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 90.6 ? 45 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 156.9 ? 46 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 123.7 ? 47 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 127.8 ? 48 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 76.4 ? 49 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 72.9 ? 50 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 65.9 ? 51 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 125.7 ? 52 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 101.2 ? 53 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 156.5 ? 54 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 66.4 ? 55 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 91.5 ? 56 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 90.8 ? 57 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 76.8 ? 58 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 155.2 ? 59 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 122.4 ? 60 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 127.6 ? 61 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 76.9 ? 62 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 72.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-12-26 2 'Structure model' 1 1 2013-01-02 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.value' 10 3 'Structure model' '_struct_conn.pdbx_dist_value' 11 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.6.0117 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.11 'August 3, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 CBASS . ? ? ? ? 'data collection' ? ? ? 4 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 5 SCALA . ? ? ? ? 'data scaling' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DT 6 ? ? P A DA 7 ? ? 1.688 1.607 0.081 0.012 Y 2 1 "O3'" A DG 10 ? ? P A DT 11 ? ? 1.715 1.607 0.108 0.012 Y 3 1 "O3'" A DA 13 ? ? P A DG 14 ? ? 1.691 1.607 0.084 0.012 Y 4 1 "O3'" A DT 18 ? ? P A DA 19 ? ? 1.725 1.607 0.118 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DA 1 ? ? "O3'" A DA 1 ? ? P A DG 2 ? ? 109.29 119.70 -10.41 1.20 Y 2 1 "O3'" A DA 1 ? ? P A DG 2 ? ? "O5'" A DG 2 ? ? 87.52 104.00 -16.48 1.90 Y 3 1 "O3'" A DG 2 ? ? P A DG 3 ? ? OP2 A DG 3 ? ? 124.03 110.50 13.53 1.10 Y 4 1 "O5'" A DG 3 ? ? P A DG 3 ? ? OP2 A DG 3 ? ? 96.71 105.70 -8.99 0.90 N 5 1 "O3'" A DG 3 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 119.37 110.50 8.87 1.10 Y 6 1 "O5'" A DT 5 ? ? "C5'" A DT 5 ? ? "C4'" A DT 5 ? ? 104.20 109.40 -5.20 0.80 N 7 1 "O3'" A DT 5 ? ? P A DT 6 ? ? OP2 A DT 6 ? ? 118.84 110.50 8.34 1.10 Y 8 1 "O5'" A DG 8 ? ? P A DG 8 ? ? OP2 A DG 8 ? ? 99.97 105.70 -5.73 0.90 N 9 1 "O5'" A DG 8 ? ? "C5'" A DG 8 ? ? "C4'" A DG 8 ? ? 104.32 109.40 -5.08 0.80 N 10 1 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DG 9 ? ? 112.30 119.70 -7.40 1.20 Y 11 1 "O3'" A DG 8 ? ? P A DG 9 ? ? OP2 A DG 9 ? ? 120.66 110.50 10.16 1.10 Y 12 1 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DT 11 ? ? 111.50 119.70 -8.20 1.20 Y 13 1 "O5'" A DT 12 ? ? P A DT 12 ? ? OP1 A DT 12 ? ? 98.43 105.70 -7.27 0.90 N 14 1 "O3'" A DA 13 ? ? P A DG 14 ? ? OP2 A DG 14 ? ? 118.24 110.50 7.74 1.10 Y 15 1 "O5'" A DG 14 ? ? P A DG 14 ? ? OP2 A DG 14 ? ? 90.16 105.70 -15.54 0.90 N 16 1 "O5'" A DG 14 ? ? "C5'" A DG 14 ? ? "C4'" A DG 14 ? ? 104.47 109.40 -4.93 0.80 N 17 1 "O3'" A DG 14 ? ? P A DG 15 ? ? OP2 A DG 15 ? ? 121.32 110.50 10.82 1.10 Y 18 1 "O3'" A DG 15 ? ? P A DG 16 ? ? OP2 A DG 16 ? ? 118.12 110.50 7.62 1.10 Y 19 1 "O5'" A DT 17 ? ? P A DT 17 ? ? OP1 A DT 17 ? ? 99.37 105.70 -6.33 0.90 N 20 1 "O3'" A DT 17 ? ? P A DT 18 ? ? OP2 A DT 18 ? ? 118.21 110.50 7.71 1.10 Y 21 1 "O5'" A DG 20 ? ? P A DG 20 ? ? OP2 A DG 20 ? ? 99.54 105.70 -6.16 0.90 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DG OP3 O N N 37 DG P P N N 38 DG OP1 O N N 39 DG OP2 O N N 40 DG "O5'" O N N 41 DG "C5'" C N N 42 DG "C4'" C N R 43 DG "O4'" O N N 44 DG "C3'" C N S 45 DG "O3'" O N N 46 DG "C2'" C N N 47 DG "C1'" C N R 48 DG N9 N Y N 49 DG C8 C Y N 50 DG N7 N Y N 51 DG C5 C Y N 52 DG C6 C N N 53 DG O6 O N N 54 DG N1 N N N 55 DG C2 C N N 56 DG N2 N N N 57 DG N3 N N N 58 DG C4 C Y N 59 DG HOP3 H N N 60 DG HOP2 H N N 61 DG "H5'" H N N 62 DG "H5''" H N N 63 DG "H4'" H N N 64 DG "H3'" H N N 65 DG "HO3'" H N N 66 DG "H2'" H N N 67 DG "H2''" H N N 68 DG "H1'" H N N 69 DG H8 H N N 70 DG H1 H N N 71 DG H21 H N N 72 DG H22 H N N 73 DT OP3 O N N 74 DT P P N N 75 DT OP1 O N N 76 DT OP2 O N N 77 DT "O5'" O N N 78 DT "C5'" C N N 79 DT "C4'" C N R 80 DT "O4'" O N N 81 DT "C3'" C N S 82 DT "O3'" O N N 83 DT "C2'" C N N 84 DT "C1'" C N R 85 DT N1 N N N 86 DT C2 C N N 87 DT O2 O N N 88 DT N3 N N N 89 DT C4 C N N 90 DT O4 O N N 91 DT C5 C N N 92 DT C7 C N N 93 DT C6 C N N 94 DT HOP3 H N N 95 DT HOP2 H N N 96 DT "H5'" H N N 97 DT "H5''" H N N 98 DT "H4'" H N N 99 DT "H3'" H N N 100 DT "HO3'" H N N 101 DT "H2'" H N N 102 DT "H2''" H N N 103 DT "H1'" H N N 104 DT H3 H N N 105 DT H71 H N N 106 DT H72 H N N 107 DT H73 H N N 108 DT H6 H N N 109 HOH O O N N 110 HOH H1 H N N 111 HOH H2 H N N 112 K K K N N 113 MMP C1 C N N 114 MMP N1 N Y N 115 MMP C11 C Y N 116 MMP C12 C Y N 117 MMP C13 C Y N 118 MMP C14 C Y N 119 MMP C15 C Y N 120 MMP C16 C N N 121 MMP C17 C N N 122 MMP C18 C N N 123 MMP N2 N Y N 124 MMP C21 C Y N 125 MMP C22 C N N 126 MMP C23 C N N 127 MMP C24 C Y N 128 MMP C25 C Y N 129 MMP C26 C N N 130 MMP C27 C N N 131 MMP C28 C N N 132 MMP N3 N Y N 133 MMP C31 C Y N 134 MMP C32 C Y N 135 MMP C33 C Y N 136 MMP C34 C Y N 137 MMP C35 C Y N 138 MMP C36 C N N 139 MMP C37 C N N 140 MMP C38 C N N 141 MMP C39 C N N 142 MMP O31 O N N 143 MMP O32 O N N 144 MMP N4 N Y N 145 MMP C41 C Y N 146 MMP C42 C N N 147 MMP C43 C N N 148 MMP C44 C Y N 149 MMP C45 C Y N 150 MMP C46 C N N 151 MMP C47 C N N 152 MMP C48 C N N 153 MMP C49 C N N 154 MMP O41 O N N 155 MMP O42 O N N 156 MMP H11 H N N 157 MMP H12 H N N 158 MMP H13 H N N 159 MMP H15 H N N 160 MMP H161 H N N 161 MMP H162 H N N 162 MMP H163 H N N 163 MMP H171 H N N 164 MMP H172 H N N 165 MMP H181 H N N 166 MMP H182 H N N 167 MMP H183 H N N 168 MMP H25 H N N 169 MMP H261 H N N 170 MMP H262 H N N 171 MMP H263 H N N 172 MMP H271 H N N 173 MMP H272 H N N 174 MMP H281 H N N 175 MMP H282 H N N 176 MMP H283 H N N 177 MMP HN3 H N N 178 MMP H35 H N N 179 MMP H361 H N N 180 MMP H362 H N N 181 MMP H363 H N N 182 MMP H371 H N N 183 MMP H372 H N N 184 MMP H381 H N N 185 MMP H382 H N N 186 MMP HO31 H N N 187 MMP H45 H N N 188 MMP H461 H N N 189 MMP H462 H N N 190 MMP H463 H N N 191 MMP H471 H N N 192 MMP H472 H N N 193 MMP H481 H N N 194 MMP H482 H N N 195 MMP HO41 H N N 196 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DG OP3 P sing N N 39 DG OP3 HOP3 sing N N 40 DG P OP1 doub N N 41 DG P OP2 sing N N 42 DG P "O5'" sing N N 43 DG OP2 HOP2 sing N N 44 DG "O5'" "C5'" sing N N 45 DG "C5'" "C4'" sing N N 46 DG "C5'" "H5'" sing N N 47 DG "C5'" "H5''" sing N N 48 DG "C4'" "O4'" sing N N 49 DG "C4'" "C3'" sing N N 50 DG "C4'" "H4'" sing N N 51 DG "O4'" "C1'" sing N N 52 DG "C3'" "O3'" sing N N 53 DG "C3'" "C2'" sing N N 54 DG "C3'" "H3'" sing N N 55 DG "O3'" "HO3'" sing N N 56 DG "C2'" "C1'" sing N N 57 DG "C2'" "H2'" sing N N 58 DG "C2'" "H2''" sing N N 59 DG "C1'" N9 sing N N 60 DG "C1'" "H1'" sing N N 61 DG N9 C8 sing Y N 62 DG N9 C4 sing Y N 63 DG C8 N7 doub Y N 64 DG C8 H8 sing N N 65 DG N7 C5 sing Y N 66 DG C5 C6 sing N N 67 DG C5 C4 doub Y N 68 DG C6 O6 doub N N 69 DG C6 N1 sing N N 70 DG N1 C2 sing N N 71 DG N1 H1 sing N N 72 DG C2 N2 sing N N 73 DG C2 N3 doub N N 74 DG N2 H21 sing N N 75 DG N2 H22 sing N N 76 DG N3 C4 sing N N 77 DT OP3 P sing N N 78 DT OP3 HOP3 sing N N 79 DT P OP1 doub N N 80 DT P OP2 sing N N 81 DT P "O5'" sing N N 82 DT OP2 HOP2 sing N N 83 DT "O5'" "C5'" sing N N 84 DT "C5'" "C4'" sing N N 85 DT "C5'" "H5'" sing N N 86 DT "C5'" "H5''" sing N N 87 DT "C4'" "O4'" sing N N 88 DT "C4'" "C3'" sing N N 89 DT "C4'" "H4'" sing N N 90 DT "O4'" "C1'" sing N N 91 DT "C3'" "O3'" sing N N 92 DT "C3'" "C2'" sing N N 93 DT "C3'" "H3'" sing N N 94 DT "O3'" "HO3'" sing N N 95 DT "C2'" "C1'" sing N N 96 DT "C2'" "H2'" sing N N 97 DT "C2'" "H2''" sing N N 98 DT "C1'" N1 sing N N 99 DT "C1'" "H1'" sing N N 100 DT N1 C2 sing N N 101 DT N1 C6 sing N N 102 DT C2 O2 doub N N 103 DT C2 N3 sing N N 104 DT N3 C4 sing N N 105 DT N3 H3 sing N N 106 DT C4 O4 doub N N 107 DT C4 C5 sing N N 108 DT C5 C7 sing N N 109 DT C5 C6 doub N N 110 DT C7 H71 sing N N 111 DT C7 H72 sing N N 112 DT C7 H73 sing N N 113 DT C6 H6 sing N N 114 HOH O H1 sing N N 115 HOH O H2 sing N N 116 MMP C1 N1 sing N N 117 MMP C1 H11 sing N N 118 MMP C1 H12 sing N N 119 MMP C1 H13 sing N N 120 MMP N1 C11 sing Y N 121 MMP N1 C14 sing Y N 122 MMP C11 C12 doub Y N 123 MMP C11 C45 sing Y N 124 MMP C12 C13 sing Y N 125 MMP C12 C16 sing N N 126 MMP C13 C14 doub Y N 127 MMP C13 C17 sing N N 128 MMP C14 C15 sing Y N 129 MMP C15 C21 doub Y Z 130 MMP C15 H15 sing N N 131 MMP C16 H161 sing N N 132 MMP C16 H162 sing N N 133 MMP C16 H163 sing N N 134 MMP C17 C18 sing N N 135 MMP C17 H171 sing N N 136 MMP C17 H172 sing N N 137 MMP C18 H181 sing N N 138 MMP C18 H182 sing N N 139 MMP C18 H183 sing N N 140 MMP N2 C21 sing Y N 141 MMP N2 C24 doub Y N 142 MMP C21 C22 sing N N 143 MMP C22 C23 doub N N 144 MMP C22 C26 sing N N 145 MMP C23 C24 sing N N 146 MMP C23 C27 sing N N 147 MMP C24 C25 sing Y N 148 MMP C25 C31 doub Y Z 149 MMP C25 H25 sing N N 150 MMP C26 H261 sing N N 151 MMP C26 H262 sing N N 152 MMP C26 H263 sing N N 153 MMP C27 C28 sing N N 154 MMP C27 H271 sing N N 155 MMP C27 H272 sing N N 156 MMP C28 H281 sing N N 157 MMP C28 H282 sing N N 158 MMP C28 H283 sing N N 159 MMP N3 C31 sing Y N 160 MMP N3 C34 sing Y N 161 MMP N3 HN3 sing N N 162 MMP C31 C32 sing Y N 163 MMP C32 C33 doub Y N 164 MMP C32 C36 sing N N 165 MMP C33 C34 sing Y N 166 MMP C33 C37 sing N N 167 MMP C34 C35 doub Y Z 168 MMP C35 C41 sing Y N 169 MMP C35 H35 sing N N 170 MMP C36 H361 sing N N 171 MMP C36 H362 sing N N 172 MMP C36 H363 sing N N 173 MMP C37 C38 sing N N 174 MMP C37 H371 sing N N 175 MMP C37 H372 sing N N 176 MMP C38 C39 sing N N 177 MMP C38 H381 sing N N 178 MMP C38 H382 sing N N 179 MMP C39 O31 sing N N 180 MMP C39 O32 doub N N 181 MMP O31 HO31 sing N N 182 MMP N4 C41 doub Y N 183 MMP N4 C44 sing Y N 184 MMP C41 C42 sing N N 185 MMP C42 C43 doub N N 186 MMP C42 C47 sing N N 187 MMP C43 C44 sing N N 188 MMP C43 C46 sing N N 189 MMP C44 C45 doub Y Z 190 MMP C45 H45 sing N N 191 MMP C46 H461 sing N N 192 MMP C46 H462 sing N N 193 MMP C46 H463 sing N N 194 MMP C47 C48 sing N N 195 MMP C47 H471 sing N N 196 MMP C47 H472 sing N N 197 MMP C48 C49 sing N N 198 MMP C48 H481 sing N N 199 MMP C48 H482 sing N N 200 MMP C49 O41 sing N N 201 MMP C49 O42 doub N N 202 MMP O41 HO41 sing N N 203 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4FXM 'double helix' 4FXM 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 A DG 20 1_555 -1.546 -3.532 -0.003 -2.465 2.297 89.510 1 A_DG2:DG20_A A 2 ? A 20 ? 6 3 1 A DG 3 1_555 A DG 21 1_555 -1.513 -3.580 0.074 -5.460 8.719 89.723 2 A_DG3:DG21_A A 3 ? A 21 ? 6 3 1 A DG 9 1_555 A DG 15 1_555 1.509 3.614 -0.108 9.604 -9.007 -89.159 3 A_DG9:DG15_A A 9 ? A 15 ? 6 3 1 A DG 8 1_555 A DG 14 1_555 1.547 3.452 0.011 3.178 -2.434 -88.699 4 A_DG8:DG14_A A 8 ? A 14 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 A DG 20 1_555 A DG 3 1_555 A DG 21 1_555 -0.542 -0.764 3.210 1.414 3.520 28.694 -2.279 1.387 3.067 7.063 -2.837 28.939 1 AA_DG2DG3:DG21DG20_AA A 2 ? A 20 ? A 3 ? A 21 ? 1 A DG 3 1_555 A DG 21 1_555 A DG 9 1_555 A DG 15 1_555 -1.471 -3.570 0.004 -6.075 6.151 179.460 -1.785 0.736 0.004 3.076 3.037 179.461 2 AA_DG3DG9:DG15DG21_AA A 3 ? A 21 ? A 9 ? A 15 ? 1 A DG 9 1_555 A DG 15 1_555 A DG 8 1_555 A DG 14 1_555 0.461 0.785 -3.190 -1.083 -3.502 -28.009 -2.389 1.186 -3.051 7.197 -2.225 -28.243 3 AA_DG9DG8:DG14DG15_AA A 9 ? A 15 ? A 8 ? A 14 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 N-METHYLMESOPORPHYRIN MMP 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3T5E _pdbx_initial_refinement_model.details 'PDB ENTRY 3T5E' #