HEADER OXIDOREDUCTASE 04-JUL-12 4FYC TITLE STRUCTURAL AND FUNCTIONAL CHARACTERIZATIONS OF A THIOREDOXIN-FOLD TITLE 2 PROTEIN FROM HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN (DSBC); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: ATCC 700392 / 26695; SOURCE 5 GENE: HP_0377; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS THIOREDOXIN FOLD, REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.Y.YOON,J.KIM,S.J.LEE,H.N.IM,H.S.KIM,H.YOON,D.R.AN,J.Y.KIM,S.KIM, AUTHOR 2 B.W.HAN,S.W.SUH REVDAT 3 08-NOV-23 4FYC 1 REMARK SEQADV REVDAT 2 11-SEP-13 4FYC 1 JRNL REVDAT 1 08-MAY-13 4FYC 0 JRNL AUTH J.Y.YOON,J.KIM,D.R.AN,S.J.LEE,H.S.KIM,H.N.IM,H.J.YOON, JRNL AUTH 2 J.Y.KIM,S.J.KIM,B.W.HAN,S.W.SUH JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF HP0377, A JRNL TITL 2 THIOREDOXIN-FOLD PROTEIN FROM HELICOBACTER PYLORI JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 735 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23633582 JRNL DOI 10.1107/S0907444913001236 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 16927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 910 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 977 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2633 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 63 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.19000 REMARK 3 B22 (A**2) : -1.92000 REMARK 3 B33 (A**2) : 4.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.309 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.685 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2702 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3616 ; 1.202 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 321 ; 5.630 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;28.739 ;25.556 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;16.719 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;20.015 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 386 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1980 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4FYC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17837 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4FYB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM SODIUM FORMATE (PH 7.0), 20% REMARK 280 (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.42900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.97650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.42900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.97650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 TYR A 6 REMARK 465 VAL A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 10 REMARK 465 PHE A 11 REMARK 465 LEU A 12 REMARK 465 SER A 13 REMARK 465 VAL A 14 REMARK 465 LEU A 15 REMARK 465 LEU A 16 REMARK 465 LEU A 17 REMARK 465 ILE A 18 REMARK 465 SER A 19 REMARK 465 LEU A 20 REMARK 465 PHE A 21 REMARK 465 LEU A 22 REMARK 465 SER A 23 REMARK 465 ALA A 24 REMARK 465 CYS A 25 REMARK 465 LYS A 26 REMARK 465 SER A 27 REMARK 465 ASN A 28 REMARK 465 ASN A 29 REMARK 465 LYS A 30 REMARK 465 ASP A 31 REMARK 465 LYS A 32 REMARK 465 LEU A 33 REMARK 465 ASP A 34 REMARK 465 GLU A 35 REMARK 465 ASN A 36 REMARK 465 LEU A 37 REMARK 465 LEU A 38 REMARK 465 SER A 39 REMARK 465 SER A 40 REMARK 465 GLY A 41 REMARK 465 SER A 42 REMARK 465 GLN A 43 REMARK 465 SER A 44 REMARK 465 SER A 45 REMARK 465 LYS A 46 REMARK 465 GLU A 47 REMARK 465 LEU A 48 REMARK 465 ASN A 49 REMARK 465 ASP A 50 REMARK 465 GLU A 51 REMARK 465 ARG A 52 REMARK 465 ASP A 53 REMARK 465 ASN A 54 REMARK 465 ILE A 55 REMARK 465 SER A 218 REMARK 465 LYS A 219 REMARK 465 SER A 220 REMARK 465 ASN A 221 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 SER B 3 REMARK 465 LEU B 4 REMARK 465 SER B 5 REMARK 465 TYR B 6 REMARK 465 VAL B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 LYS B 10 REMARK 465 PHE B 11 REMARK 465 LEU B 12 REMARK 465 SER B 13 REMARK 465 VAL B 14 REMARK 465 LEU B 15 REMARK 465 LEU B 16 REMARK 465 LEU B 17 REMARK 465 ILE B 18 REMARK 465 SER B 19 REMARK 465 LEU B 20 REMARK 465 PHE B 21 REMARK 465 LEU B 22 REMARK 465 SER B 23 REMARK 465 ALA B 24 REMARK 465 CYS B 25 REMARK 465 LYS B 26 REMARK 465 SER B 27 REMARK 465 ASN B 28 REMARK 465 ASN B 29 REMARK 465 LYS B 30 REMARK 465 ASP B 31 REMARK 465 LYS B 32 REMARK 465 LEU B 33 REMARK 465 ASP B 34 REMARK 465 GLU B 35 REMARK 465 ASN B 36 REMARK 465 LEU B 37 REMARK 465 LEU B 38 REMARK 465 SER B 39 REMARK 465 SER B 40 REMARK 465 GLY B 41 REMARK 465 SER B 42 REMARK 465 GLN B 43 REMARK 465 SER B 44 REMARK 465 SER B 45 REMARK 465 LYS B 46 REMARK 465 GLU B 47 REMARK 465 LEU B 48 REMARK 465 ASN B 49 REMARK 465 ASP B 50 REMARK 465 GLU B 51 REMARK 465 ARG B 52 REMARK 465 ASP B 53 REMARK 465 ASN B 54 REMARK 465 ILE B 55 REMARK 465 LYS B 217 REMARK 465 SER B 218 REMARK 465 LYS B 219 REMARK 465 SER B 220 REMARK 465 ASN B 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 172 C - N - CD ANGL. DEV. = -18.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 194 40.78 -79.86 REMARK 500 ASN B 134 -12.41 70.60 REMARK 500 GLN B 153 -77.94 -108.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FYB RELATED DB: PDB REMARK 900 OXIDIZED STATE DBREF 4FYC A 1 221 UNP O25140 O25140_HELPY 1 221 DBREF 4FYC B 1 221 UNP O25140 O25140_HELPY 1 221 SEQADV 4FYC MET A -19 UNP O25140 EXPRESSION TAG SEQADV 4FYC GLY A -18 UNP O25140 EXPRESSION TAG SEQADV 4FYC SER A -17 UNP O25140 EXPRESSION TAG SEQADV 4FYC SER A -16 UNP O25140 EXPRESSION TAG SEQADV 4FYC HIS A -15 UNP O25140 EXPRESSION TAG SEQADV 4FYC HIS A -14 UNP O25140 EXPRESSION TAG SEQADV 4FYC HIS A -13 UNP O25140 EXPRESSION TAG SEQADV 4FYC HIS A -12 UNP O25140 EXPRESSION TAG SEQADV 4FYC HIS A -11 UNP O25140 EXPRESSION TAG SEQADV 4FYC HIS A -10 UNP O25140 EXPRESSION TAG SEQADV 4FYC SER A -9 UNP O25140 EXPRESSION TAG SEQADV 4FYC SER A -8 UNP O25140 EXPRESSION TAG SEQADV 4FYC GLY A -7 UNP O25140 EXPRESSION TAG SEQADV 4FYC LEU A -6 UNP O25140 EXPRESSION TAG SEQADV 4FYC VAL A -5 UNP O25140 EXPRESSION TAG SEQADV 4FYC PRO A -4 UNP O25140 EXPRESSION TAG SEQADV 4FYC ARG A -3 UNP O25140 EXPRESSION TAG SEQADV 4FYC GLY A -2 UNP O25140 EXPRESSION TAG SEQADV 4FYC SER A -1 UNP O25140 EXPRESSION TAG SEQADV 4FYC HIS A 0 UNP O25140 EXPRESSION TAG SEQADV 4FYC MET B -19 UNP O25140 EXPRESSION TAG SEQADV 4FYC GLY B -18 UNP O25140 EXPRESSION TAG SEQADV 4FYC SER B -17 UNP O25140 EXPRESSION TAG SEQADV 4FYC SER B -16 UNP O25140 EXPRESSION TAG SEQADV 4FYC HIS B -15 UNP O25140 EXPRESSION TAG SEQADV 4FYC HIS B -14 UNP O25140 EXPRESSION TAG SEQADV 4FYC HIS B -13 UNP O25140 EXPRESSION TAG SEQADV 4FYC HIS B -12 UNP O25140 EXPRESSION TAG SEQADV 4FYC HIS B -11 UNP O25140 EXPRESSION TAG SEQADV 4FYC HIS B -10 UNP O25140 EXPRESSION TAG SEQADV 4FYC SER B -9 UNP O25140 EXPRESSION TAG SEQADV 4FYC SER B -8 UNP O25140 EXPRESSION TAG SEQADV 4FYC GLY B -7 UNP O25140 EXPRESSION TAG SEQADV 4FYC LEU B -6 UNP O25140 EXPRESSION TAG SEQADV 4FYC VAL B -5 UNP O25140 EXPRESSION TAG SEQADV 4FYC PRO B -4 UNP O25140 EXPRESSION TAG SEQADV 4FYC ARG B -3 UNP O25140 EXPRESSION TAG SEQADV 4FYC GLY B -2 UNP O25140 EXPRESSION TAG SEQADV 4FYC SER B -1 UNP O25140 EXPRESSION TAG SEQADV 4FYC HIS B 0 UNP O25140 EXPRESSION TAG SEQRES 1 A 241 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 241 LEU VAL PRO ARG GLY SER HIS MET PHE SER LEU SER TYR SEQRES 3 A 241 VAL SER LYS LYS PHE LEU SER VAL LEU LEU LEU ILE SER SEQRES 4 A 241 LEU PHE LEU SER ALA CYS LYS SER ASN ASN LYS ASP LYS SEQRES 5 A 241 LEU ASP GLU ASN LEU LEU SER SER GLY SER GLN SER SER SEQRES 6 A 241 LYS GLU LEU ASN ASP GLU ARG ASP ASN ILE ASP LYS LYS SEQRES 7 A 241 SER TYR ALA GLY LEU GLU ASP VAL PHE SER ASP ASN LYS SEQRES 8 A 241 SER ILE SER PRO ASN ASP LYS TYR MET LEU LEU VAL PHE SEQRES 9 A 241 GLY ARG ASN GLY CYS SER TYR CYS GLU ARG PHE LYS LYS SEQRES 10 A 241 ASP LEU LYS ASN VAL LYS GLU LEU ARG ASP TYR ILE LYS SEQRES 11 A 241 GLU HIS PHE SER ALA TYR TYR VAL ASN ILE SER TYR SER SEQRES 12 A 241 LYS GLU HIS ASP PHE LYS VAL GLY ASP LYS ASN ASN GLU SEQRES 13 A 241 LYS GLU ILE LYS MET SER THR GLU GLU LEU ALA GLN ILE SEQRES 14 A 241 TYR ALA VAL GLN SER THR PRO THR ILE VAL LEU SER ASP SEQRES 15 A 241 LYS THR GLY LYS THR ILE TYR GLU LEU PRO GLY TYR MET SEQRES 16 A 241 PRO SER THR GLN PHE LEU ALA VAL LEU GLU PHE ILE GLY SEQRES 17 A 241 ASP GLY LYS TYR GLN ASP THR LYS ASP ASP GLU ASP LEU SEQRES 18 A 241 THR LYS LYS LEU LYS ALA TYR ILE LYS TYR LYS THR ASN SEQRES 19 A 241 LEU SER LYS SER LYS SER ASN SEQRES 1 B 241 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 241 LEU VAL PRO ARG GLY SER HIS MET PHE SER LEU SER TYR SEQRES 3 B 241 VAL SER LYS LYS PHE LEU SER VAL LEU LEU LEU ILE SER SEQRES 4 B 241 LEU PHE LEU SER ALA CYS LYS SER ASN ASN LYS ASP LYS SEQRES 5 B 241 LEU ASP GLU ASN LEU LEU SER SER GLY SER GLN SER SER SEQRES 6 B 241 LYS GLU LEU ASN ASP GLU ARG ASP ASN ILE ASP LYS LYS SEQRES 7 B 241 SER TYR ALA GLY LEU GLU ASP VAL PHE SER ASP ASN LYS SEQRES 8 B 241 SER ILE SER PRO ASN ASP LYS TYR MET LEU LEU VAL PHE SEQRES 9 B 241 GLY ARG ASN GLY CYS SER TYR CYS GLU ARG PHE LYS LYS SEQRES 10 B 241 ASP LEU LYS ASN VAL LYS GLU LEU ARG ASP TYR ILE LYS SEQRES 11 B 241 GLU HIS PHE SER ALA TYR TYR VAL ASN ILE SER TYR SER SEQRES 12 B 241 LYS GLU HIS ASP PHE LYS VAL GLY ASP LYS ASN ASN GLU SEQRES 13 B 241 LYS GLU ILE LYS MET SER THR GLU GLU LEU ALA GLN ILE SEQRES 14 B 241 TYR ALA VAL GLN SER THR PRO THR ILE VAL LEU SER ASP SEQRES 15 B 241 LYS THR GLY LYS THR ILE TYR GLU LEU PRO GLY TYR MET SEQRES 16 B 241 PRO SER THR GLN PHE LEU ALA VAL LEU GLU PHE ILE GLY SEQRES 17 B 241 ASP GLY LYS TYR GLN ASP THR LYS ASP ASP GLU ASP LEU SEQRES 18 B 241 THR LYS LYS LEU LYS ALA TYR ILE LYS TYR LYS THR ASN SEQRES 19 B 241 LEU SER LYS SER LYS SER ASN HET PG4 A 300 13 HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 3 PG4 C8 H18 O5 FORMUL 4 HOH *63(H2 O) HELIX 1 1 ASP A 56 ALA A 61 5 6 HELIX 2 2 CYS A 89 VAL A 102 1 14 HELIX 3 3 VAL A 102 HIS A 112 1 11 HELIX 4 4 THR A 143 TYR A 150 1 8 HELIX 5 5 PRO A 176 ASP A 189 1 14 HELIX 6 6 GLY A 190 THR A 195 5 6 HELIX 7 7 ASP A 197 SER A 216 1 20 HELIX 8 8 ASP B 56 ALA B 61 5 6 HELIX 9 9 CYS B 89 VAL B 102 1 14 HELIX 10 10 VAL B 102 HIS B 112 1 11 HELIX 11 11 THR B 143 TYR B 150 1 8 HELIX 12 12 PRO B 176 ASP B 189 1 14 HELIX 13 13 GLU B 199 LEU B 215 1 17 SHEET 1 A 3 SER A 72 ILE A 73 0 SHEET 2 A 3 GLU A 125 GLY A 131 1 O ASP A 127 N ILE A 73 SHEET 3 A 3 GLU A 136 SER A 142 -1 O MET A 141 N HIS A 126 SHEET 1 B 4 PHE A 113 ASN A 119 0 SHEET 2 B 4 TYR A 79 GLY A 85 1 N VAL A 83 O VAL A 118 SHEET 3 B 4 THR A 157 SER A 161 -1 O THR A 157 N PHE A 84 SHEET 4 B 4 THR A 167 LEU A 171 -1 O LEU A 171 N ILE A 158 SHEET 1 C 3 SER B 72 ILE B 73 0 SHEET 2 C 3 GLU B 125 VAL B 130 1 O LYS B 129 N ILE B 73 SHEET 3 C 3 LYS B 137 SER B 142 -1 O MET B 141 N HIS B 126 SHEET 1 D 4 PHE B 113 ASN B 119 0 SHEET 2 D 4 TYR B 79 GLY B 85 1 N VAL B 83 O VAL B 118 SHEET 3 D 4 THR B 157 SER B 161 -1 O VAL B 159 N LEU B 82 SHEET 4 D 4 THR B 167 LEU B 171 -1 O ILE B 168 N LEU B 160 CISPEP 1 THR A 155 PRO A 156 0 -7.16 CISPEP 2 THR B 155 PRO B 156 0 -7.01 SITE 1 AC1 5 TYR A 91 SER A 154 THR A 155 GLY A 173 SITE 2 AC1 5 TYR A 174 CRYST1 140.858 43.953 76.699 90.00 112.29 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007099 0.000000 0.002910 0.00000 SCALE2 0.000000 0.022752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014091 0.00000