HEADER HYDROLASE 04-JUL-12 4FYE TITLE CRYSTAL STRUCTURE OF A LEGIONELLA PHOSPHOINOSITIDE PHOSPHATASE, SIDF COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIDF, INHIBITOR OF GROWTH FAMILY, MEMBER 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL PHOSPHATASE DOMAIN OF SIDF; COMPND 5 EC: 3.1.3.67; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 272624; SOURCE 4 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 5 GENE: LPG2584, SIDF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS MIXED ALPHA-BETA, PHOSPHATASE, PHOSPHOINOSITIDES, MEMBRANE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.S.HSU,W.ZHU,L.BRENNAN,L.TAO,Z.Q.LUO,Y.MAO REVDAT 3 28-FEB-24 4FYE 1 REMARK SEQADV REVDAT 2 05-SEP-12 4FYE 1 JRNL REVDAT 1 22-AUG-12 4FYE 0 JRNL AUTH F.HSU,W.ZHU,L.BRENNAN,L.TAO,Z.Q.LUO,Y.MAO JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE RECOGNITION BY A UNIQUE JRNL TITL 2 LEGIONELLA PHOSPHOINOSITIDE PHOSPHATASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 13567 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22872863 JRNL DOI 10.1073/PNAS.1207903109 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 38312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2018 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5771 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.84000 REMARK 3 B22 (A**2) : -4.69000 REMARK 3 B33 (A**2) : 2.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.322 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.246 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.348 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5885 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7931 ; 2.067 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 725 ; 6.794 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 305 ;39.853 ;25.475 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1087 ;21.502 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;21.583 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 852 ; 0.159 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4484 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 742 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8238 45.7536 22.3393 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.0375 REMARK 3 T33: 0.0838 T12: -0.0449 REMARK 3 T13: 0.0416 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 1.1304 L22: 2.5264 REMARK 3 L33: 1.3033 L12: -0.7913 REMARK 3 L13: -0.3792 L23: 1.0230 REMARK 3 S TENSOR REMARK 3 S11: 0.1810 S12: -0.1396 S13: 0.2591 REMARK 3 S21: -0.1119 S22: -0.0045 S23: -0.1311 REMARK 3 S31: -0.1483 S32: -0.0125 S33: -0.1765 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4FYE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40455 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 84.767 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.80 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH8.0, 10% PEG3350, AND REMARK 280 10% ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.08800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.11200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.97950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.11200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.08800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.97950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ARG A 3 REMARK 465 SER A 222 REMARK 465 GLU A 223 REMARK 465 VAL A 224 REMARK 465 ASN A 225 REMARK 465 ARG A 226 REMARK 465 ASP A 227 REMARK 465 HIS A 228 REMARK 465 ASP A 229 REMARK 465 THR A 230 REMARK 465 THR A 231 REMARK 465 SER A 232 REMARK 465 HIS A 233 REMARK 465 LYS A 234 REMARK 465 ARG A 235 REMARK 465 GLU A 743 REMARK 465 MET A 744 REMARK 465 GLY A 745 REMARK 465 PRO A 746 REMARK 465 GLU A 747 REMARK 465 ASN A 748 REMARK 465 ALA A 749 REMARK 465 PHE A 750 REMARK 465 THR A 751 REMARK 465 LYS A 752 REMARK 465 ASN A 753 REMARK 465 MET A 754 REMARK 465 GLY A 755 REMARK 465 THR A 756 REMARK 465 LYS A 757 REMARK 465 ILE A 758 REMARK 465 LYS A 759 REMARK 465 ALA A 760 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 130 CB SER A 130 OG -0.085 REMARK 500 TRP A 617 CE2 TRP A 617 CD2 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 307 CG - CD - NE ANGL. DEV. = -12.6 DEGREES REMARK 500 ARG A 307 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 307 NE - CZ - NH2 ANGL. DEV. = -9.0 DEGREES REMARK 500 ARG A 338 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 338 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 THR A 405 CB - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 ARG A 422 CG - CD - NE ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG A 422 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 422 NE - CZ - NH2 ANGL. DEV. = -8.9 DEGREES REMARK 500 VAL A 424 CG1 - CB - CG2 ANGL. DEV. = 11.1 DEGREES REMARK 500 ASN A 623 O - C - N ANGL. DEV. = -10.7 DEGREES REMARK 500 PHE A 624 C - N - CA ANGL. DEV. = -22.2 DEGREES REMARK 500 ARG A 654 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 683 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 5 52.55 -118.65 REMARK 500 MET A 44 -43.52 -138.71 REMARK 500 ASN A 180 86.87 -160.78 REMARK 500 LEU A 216 27.28 -77.18 REMARK 500 LEU A 238 64.77 38.58 REMARK 500 GLN A 423 81.75 -163.87 REMARK 500 LEU A 427 -1.54 78.75 REMARK 500 LYS A 585 -0.66 -58.08 REMARK 500 ASP A 650 -77.25 -112.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 715 GLY A 716 -136.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 801 DBREF 4FYE A 1 760 UNP Q5ZSD5 Q5ZSD5_LEGPH 1 760 SEQADV 4FYE SER A 0 UNP Q5ZSD5 EXPRESSION TAG SEQADV 4FYE SER A 645 UNP Q5ZSD5 CYS 645 ENGINEERED MUTATION SEQRES 1 A 761 SER MET PRO ARG ILE THR GLU ASN ILE GLU THR TYR VAL SEQRES 2 A 761 THR HIS LEU LEU SER ASP LEU GLU PRO VAL PRO SER GLN SEQRES 3 A 761 ASN GLN HIS LEU ALA TYR GLY TYR PRO GLY GLU ARG GLN SEQRES 4 A 761 VAL PHE LYS ASP PRO MET LEU ASP GLY LYS GLN VAL VAL SEQRES 5 A 761 VAL VAL ASN SER GLN TYR ASP LYS HIS GLY ARG PRO VAL SEQRES 6 A 761 THR GLY GLN PRO ASP VAL ILE GLN GLU ALA ASN ASN TYR SEQRES 7 A 761 ILE ASP ASN LEU VAL ALA ALA ALA LYS SER LEU ILE ASP SEQRES 8 A 761 LYS ASP LYS LYS GLY GLU LYS ASP LEU ARG LYS ASN ALA SEQRES 9 A 761 ILE ASP GLU MET ALA LYS THR PHE LYS LYS SER ILE SER SEQRES 10 A 761 GLU THR ILE PRO SER ASP LYS ALA LYS ALA ASP LEU PHE SEQRES 11 A 761 SER SER LYS LYS SER SER ALA ASN LYS ASP PHE LEU GLU SEQRES 12 A 761 GLN LEU ALA LYS VAL GLU GLY SER LEU GLN GLN PHE THR SEQRES 13 A 761 GLN ALA VAL ALA LYS ALA SER GLY HIS LYS LEU LYS ALA SEQRES 14 A 761 LEU ASP LYS GLU GLY HIS ASN ILE ARG SER HIS ASN ARG SEQRES 15 A 761 ASP THR LEU ILE HIS ARG PHE LYS ALA PRO ASN SER LYS SEQRES 16 A 761 GLU GLY GLU GLU GLN PHE ILE MET TYR ILE PRO CYS GLY SEQRES 17 A 761 ARG TYR THR LYS ARG GLN GLN ARG LEU MET GLY LYS ASP SEQRES 18 A 761 GLU SER GLU VAL ASN ARG ASP HIS ASP THR THR SER HIS SEQRES 19 A 761 LYS ARG SER ASP LEU VAL LEU GLY ASN SER SER MET ALA SEQRES 20 A 761 ARG MET ILE ALA GLY THR ARG HIS SER ASP GLY THR VAL SEQRES 21 A 761 THR ILE HIS HIS ASP SER PHE SER GLY PRO GLY ALA ARG SEQRES 22 A 761 MET PRO TYR SER ASP PHE LYS GLY ALA ASP ASP TYR LYS SEQRES 23 A 761 LYS LEU ALA ILE LYS ALA VAL THR LEU ILE ASN GLN GLU SEQRES 24 A 761 GLU VAL ILE GLN THR LEU ALA GLN ARG GLN ILE ASP ARG SEQRES 25 A 761 MET THR ASN GLU ASP LEU TRP ASN LYS ILE PRO GLU GLU SEQRES 26 A 761 TYR ARG PRO ASP GLU LEU PRO PRO ASP ALA GLU LYS ALA SEQRES 27 A 761 ARG ALA GLN LEU ILE LYS LEU TYR VAL GLU HIS ASN PRO SEQRES 28 A 761 LEU SER VAL THR GLU CYS TYR THR GLN VAL VAL THR ALA SEQRES 29 A 761 GLY GLN ARG VAL ALA ALA GLU ASN GLN LYS GLU GLN PHE SEQRES 30 A 761 GLU TYR VAL ARG GLN MET MET ASP ALA PHE ASP GLY SER SEQRES 31 A 761 LYS ALA LYS ILE THR ILE GLN THR GLY SER ASN THR GLU SEQRES 32 A 761 VAL GLU THR ALA VAL GLY TYR GLN ALA ARG MET SER SER SEQRES 33 A 761 TRP GLY VAL ASN TRP PHE ARG GLN VAL GLY ALA LEU ASN SEQRES 34 A 761 PRO LEU SER ASP ASN SER VAL THR LYS ASN GLN ASN ALA SEQRES 35 A 761 ARG PHE VAL ASN GLN MET THR ASP ASP VAL ILE ARG ASN SEQRES 36 A 761 LEU ASP LYS VAL ALA GLN ASN LEU GLY ASP TYR ASP LYS SEQRES 37 A 761 ALA GLY ALA LEU HIS THR LEU LEU LYS GLY PRO ASP VAL SEQRES 38 A 761 SER ASP LEU ASN GLN GLN ILE THR GLU LYS GLU ASN ALA SEQRES 39 A 761 LEU LYS GLU VAL LYS GLY ALA TYR ARG GLU ALA LEU PHE SEQRES 40 A 761 SER TYR PHE GLU GLU TYR GLN LYS GLY GLU GLY LYS TRP SEQRES 41 A 761 ASP GLN ALA LYS LEU ASP GLN LEU LYS ASN GLN VAL ASP SEQRES 42 A 761 GLY TYR GLU LYS SER ILE LYS LYS GLN GLU SER ALA ILE SEQRES 43 A 761 TYR GLU LEU HIS ASN GLN ILE ASP ALA LEU ARG LYS ALA SEQRES 44 A 761 TYR TYR THR GLU HIS LYS GLY GLN ILE ASN LYS ALA LEU SEQRES 45 A 761 GLN GLU LEU LYS GLU GLN ILE SER PRO VAL ILE GLN ASN SEQRES 46 A 761 LYS GLU THR ASP PRO GLU THR LYS SER ARG LEU GLN HIS SEQRES 47 A 761 PHE TYR ASN SER CYS ALA TYR LEU THR GLN ALA GLN GLU SEQRES 48 A 761 LEU TYR TYR GLU ASN THR TRP HIS HIS GLY LYS ASN ASN SEQRES 49 A 761 PHE LYS LEU GLN THR LEU MET ALA SER LEU SER CYS GLU SEQRES 50 A 761 LEU ASP TYR ALA ASN THR LYS GLY SER LYS SER ASN ASN SEQRES 51 A 761 ASP ARG GLY GLN ARG LEU ALA GLN LYS ILE VAL GLY ASN SEQRES 52 A 761 ALA LEU TRP THR ALA MET SER GLU ASP GLY LEU TYR THR SEQRES 53 A 761 GLY GLU PHE LEU ASP HIS ARG ARG THR HIS GLY LYS GLU SEQRES 54 A 761 VAL SER ASN VAL GLU GLN LEU ASP ARG GLU LEU THR THR SEQRES 55 A 761 ILE GLN ALA LEU HIS HIS THR ALA ASN THR GLY VAL SER SEQRES 56 A 761 GLY GLY LYS PHE GLU ILE GLN ASP LYS ALA ASN PHE ALA SEQRES 57 A 761 ASP ASN GLY LEU PHE GLY LYS VAL ALA ASN PHE ALA LYS SEQRES 58 A 761 ILE LYS GLU MET GLY PRO GLU ASN ALA PHE THR LYS ASN SEQRES 59 A 761 MET GLY THR LYS ILE LYS ALA HET PO4 A 801 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *38(H2 O) HELIX 1 1 ASN A 7 LEU A 16 1 10 HELIX 2 2 PRO A 23 GLN A 27 5 5 HELIX 3 3 ASP A 69 ASP A 92 1 24 HELIX 4 4 GLU A 96 ILE A 119 1 24 HELIX 5 5 SER A 134 GLY A 163 1 30 HELIX 6 6 LYS A 165 ASN A 180 1 16 HELIX 7 7 THR A 210 LEU A 216 1 7 HELIX 8 8 PRO A 274 LYS A 279 5 6 HELIX 9 9 ASP A 282 ARG A 311 1 30 HELIX 10 10 THR A 313 LYS A 320 1 8 HELIX 11 11 ILE A 321 ARG A 326 5 6 HELIX 12 12 ASP A 333 ASN A 349 1 17 HELIX 13 13 ASN A 371 ASP A 387 1 17 HELIX 14 14 ASP A 432 VAL A 435 5 4 HELIX 15 15 THR A 436 VAL A 458 1 23 HELIX 16 16 TYR A 465 LYS A 476 1 12 HELIX 17 17 VAL A 480 LYS A 514 1 35 HELIX 18 18 ASP A 520 GLN A 583 1 64 HELIX 19 19 ASP A 588 GLU A 614 1 27 HELIX 20 20 HIS A 619 ASN A 623 5 5 HELIX 21 21 PHE A 624 LEU A 637 1 14 HELIX 22 22 ASP A 650 MET A 668 1 19 HELIX 23 23 GLY A 676 HIS A 681 1 6 HELIX 24 24 SER A 690 LEU A 699 1 10 HELIX 25 25 LEU A 699 GLY A 712 1 14 HELIX 26 26 ASP A 722 PHE A 726 5 5 HELIX 27 27 LEU A 731 ILE A 741 1 11 SHEET 1 A 6 GLN A 38 LYS A 41 0 SHEET 2 A 6 GLN A 49 ASN A 54 -1 O VAL A 52 N GLN A 38 SHEET 3 A 6 THR A 183 PHE A 188 1 O ILE A 185 N VAL A 51 SHEET 4 A 6 GLU A 198 PRO A 205 -1 O TYR A 203 N LEU A 184 SHEET 5 A 6 ALA A 246 ARG A 253 -1 O ARG A 247 N ILE A 204 SHEET 6 A 6 VAL A 259 SER A 267 -1 O SER A 267 N ALA A 246 SHEET 1 B 4 LYS A 390 GLY A 398 0 SHEET 2 B 4 THR A 401 SER A 415 -1 O VAL A 403 N ILE A 395 SHEET 3 B 4 SER A 352 GLN A 359 1 N TYR A 357 O ARG A 412 SHEET 4 B 4 ALA A 640 GLY A 644 1 O ALA A 640 N THR A 354 CISPEP 1 GLY A 268 PRO A 269 0 3.25 SITE 1 AC1 6 SER A 645 LYS A 646 ASN A 648 ASN A 649 SITE 2 AC1 6 ASP A 650 ARG A 651 CRYST1 72.176 115.959 124.224 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013855 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008050 0.00000