HEADER HYDROLASE 04-JUL-12 4FYF TITLE STRUCTURAL BASIS FOR SUBSTRATE RECOGNITION BY A NOVEL LEGIONELLA TITLE 2 PHOSPHOINOSITIDE PHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIDF, INHIBITOR OF GROWTH FAMILY, MEMBER 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL PHOSPHATASE DOMAIN OF SIDF (UNP RESIDUES 1-760); COMPND 5 EC: 3.1.3.67; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 272624; SOURCE 4 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 5 GENE: LPG2584, SIDF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS MIXED ALPHA-BETA, PHOSPHOINOSITIDE PHOSPHATASE, PHOSPHOINOSITIDES, KEYWDS 2 MEMBRANE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.S.HSU,W.ZHU,L.BRENNAN,L.TAO,Z.Q.LUO,Y.MAO REVDAT 4 03-APR-24 4FYF 1 REMARK REVDAT 3 28-FEB-24 4FYF 1 REMARK SEQADV LINK REVDAT 2 05-SEP-12 4FYF 1 JRNL REVDAT 1 22-AUG-12 4FYF 0 JRNL AUTH F.HSU,W.ZHU,L.BRENNAN,L.TAO,Z.Q.LUO,Y.MAO JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE RECOGNITION BY A UNIQUE JRNL TITL 2 LEGIONELLA PHOSPHOINOSITIDE PHOSPHATASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 13567 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22872863 JRNL DOI 10.1073/PNAS.1207903109 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 37660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1988 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2225 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5890 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.81000 REMARK 3 B22 (A**2) : -3.35000 REMARK 3 B33 (A**2) : 1.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.345 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.267 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.183 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.779 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6018 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8114 ; 2.029 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 744 ; 6.681 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 315 ;40.922 ;25.397 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1114 ;22.066 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;22.658 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 871 ; 0.165 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4597 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 741 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4762 45.9109 22.0993 REMARK 3 T TENSOR REMARK 3 T11: 0.0534 T22: 0.0289 REMARK 3 T33: 0.0516 T12: -0.0204 REMARK 3 T13: 0.0454 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.9924 L22: 1.9345 REMARK 3 L33: 1.3030 L12: -0.6034 REMARK 3 L13: -0.3123 L23: 0.7996 REMARK 3 S TENSOR REMARK 3 S11: 0.1683 S12: -0.1154 S13: 0.2140 REMARK 3 S21: -0.0393 S22: -0.0742 S23: -0.0654 REMARK 3 S31: -0.1600 S32: -0.0642 S33: -0.0940 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4FYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073508. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39764 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: SIRAS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH8.0, 10% PEG3350, AND REMARK 280 10% ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.91750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.55700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.85450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.55700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.91750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.85450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 LYS A 742 REMARK 465 GLU A 743 REMARK 465 MET A 744 REMARK 465 GLY A 745 REMARK 465 PRO A 746 REMARK 465 GLU A 747 REMARK 465 ASN A 748 REMARK 465 ALA A 749 REMARK 465 PHE A 750 REMARK 465 THR A 751 REMARK 465 LYS A 752 REMARK 465 ASN A 753 REMARK 465 MET A 754 REMARK 465 GLY A 755 REMARK 465 THR A 756 REMARK 465 LYS A 757 REMARK 465 ILE A 758 REMARK 465 LYS A 759 REMARK 465 ALA A 760 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 208 OE1 GLU A 299 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 130 CB SER A 130 OG -0.098 REMARK 500 HIS A 597 CG HIS A 597 CD2 0.061 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 92 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 GLY A 207 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 ARG A 307 CG - CD - NE ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG A 307 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 307 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 422 CG - CD - NE ANGL. DEV. = -14.0 DEGREES REMARK 500 ARG A 422 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 422 NE - CZ - NH2 ANGL. DEV. = -8.7 DEGREES REMARK 500 VAL A 424 CG1 - CB - CG2 ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG A 453 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 PHE A 624 C - N - CA ANGL. DEV. = -17.4 DEGREES REMARK 500 ARG A 654 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 654 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 671 CB - CG - OD1 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 683 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 4 3.76 -66.95 REMARK 500 THR A 5 5.73 58.71 REMARK 500 SER A 17 -179.51 -69.73 REMARK 500 LEU A 29 144.32 -170.66 REMARK 500 MET A 44 -37.48 -130.16 REMARK 500 LYS A 219 -174.81 -64.92 REMARK 500 SER A 389 -158.88 -125.93 REMARK 500 GLN A 423 84.03 -167.32 REMARK 500 LEU A 462 58.28 -143.70 REMARK 500 GLU A 516 -72.74 -53.63 REMARK 500 SER A 645 -165.22 -122.83 REMARK 500 ASP A 650 -82.57 -121.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 715 GLY A 716 -148.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 802 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 206 SG REMARK 620 2 CYS A 206 O 72.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 804 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 598 O REMARK 620 2 CYS A 602 SG 81.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 804 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FYE RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH HEAVY ATOM MERCURY DBREF 4FYF A 1 760 UNP Q5ZSD5 Q5ZSD5_LEGPH 1 760 SEQADV 4FYF SER A 0 UNP Q5ZSD5 EXPRESSION TAG SEQADV 4FYF SER A 645 UNP Q5ZSD5 CYS 645 ENGINEERED MUTATION SEQRES 1 A 761 SER MET PRO ARG ILE THR GLU ASN ILE GLU THR TYR VAL SEQRES 2 A 761 THR HIS LEU LEU SER ASP LEU GLU PRO VAL PRO SER GLN SEQRES 3 A 761 ASN GLN HIS LEU ALA TYR GLY TYR PRO GLY GLU ARG GLN SEQRES 4 A 761 VAL PHE LYS ASP PRO MET LEU ASP GLY LYS GLN VAL VAL SEQRES 5 A 761 VAL VAL ASN SER GLN TYR ASP LYS HIS GLY ARG PRO VAL SEQRES 6 A 761 THR GLY GLN PRO ASP VAL ILE GLN GLU ALA ASN ASN TYR SEQRES 7 A 761 ILE ASP ASN LEU VAL ALA ALA ALA LYS SER LEU ILE ASP SEQRES 8 A 761 LYS ASP LYS LYS GLY GLU LYS ASP LEU ARG LYS ASN ALA SEQRES 9 A 761 ILE ASP GLU MET ALA LYS THR PHE LYS LYS SER ILE SER SEQRES 10 A 761 GLU THR ILE PRO SER ASP LYS ALA LYS ALA ASP LEU PHE SEQRES 11 A 761 SER SER LYS LYS SER SER ALA ASN LYS ASP PHE LEU GLU SEQRES 12 A 761 GLN LEU ALA LYS VAL GLU GLY SER LEU GLN GLN PHE THR SEQRES 13 A 761 GLN ALA VAL ALA LYS ALA SER GLY HIS LYS LEU LYS ALA SEQRES 14 A 761 LEU ASP LYS GLU GLY HIS ASN ILE ARG SER HIS ASN ARG SEQRES 15 A 761 ASP THR LEU ILE HIS ARG PHE LYS ALA PRO ASN SER LYS SEQRES 16 A 761 GLU GLY GLU GLU GLN PHE ILE MET TYR ILE PRO CYS GLY SEQRES 17 A 761 ARG TYR THR LYS ARG GLN GLN ARG LEU MET GLY LYS ASP SEQRES 18 A 761 GLU SER GLU VAL ASN ARG ASP HIS ASP THR THR SER HIS SEQRES 19 A 761 LYS ARG SER ASP LEU VAL LEU GLY ASN SER SER MET ALA SEQRES 20 A 761 ARG MET ILE ALA GLY THR ARG HIS SER ASP GLY THR VAL SEQRES 21 A 761 THR ILE HIS HIS ASP SER PHE SER GLY PRO GLY ALA ARG SEQRES 22 A 761 MET PRO TYR SER ASP PHE LYS GLY ALA ASP ASP TYR LYS SEQRES 23 A 761 LYS LEU ALA ILE LYS ALA VAL THR LEU ILE ASN GLN GLU SEQRES 24 A 761 GLU VAL ILE GLN THR LEU ALA GLN ARG GLN ILE ASP ARG SEQRES 25 A 761 MET THR ASN GLU ASP LEU TRP ASN LYS ILE PRO GLU GLU SEQRES 26 A 761 TYR ARG PRO ASP GLU LEU PRO PRO ASP ALA GLU LYS ALA SEQRES 27 A 761 ARG ALA GLN LEU ILE LYS LEU TYR VAL GLU HIS ASN PRO SEQRES 28 A 761 LEU SER VAL THR GLU CYS TYR THR GLN VAL VAL THR ALA SEQRES 29 A 761 GLY GLN ARG VAL ALA ALA GLU ASN GLN LYS GLU GLN PHE SEQRES 30 A 761 GLU TYR VAL ARG GLN MET MET ASP ALA PHE ASP GLY SER SEQRES 31 A 761 LYS ALA LYS ILE THR ILE GLN THR GLY SER ASN THR GLU SEQRES 32 A 761 VAL GLU THR ALA VAL GLY TYR GLN ALA ARG MET SER SER SEQRES 33 A 761 TRP GLY VAL ASN TRP PHE ARG GLN VAL GLY ALA LEU ASN SEQRES 34 A 761 PRO LEU SER ASP ASN SER VAL THR LYS ASN GLN ASN ALA SEQRES 35 A 761 ARG PHE VAL ASN GLN MET THR ASP ASP VAL ILE ARG ASN SEQRES 36 A 761 LEU ASP LYS VAL ALA GLN ASN LEU GLY ASP TYR ASP LYS SEQRES 37 A 761 ALA GLY ALA LEU HIS THR LEU LEU LYS GLY PRO ASP VAL SEQRES 38 A 761 SER ASP LEU ASN GLN GLN ILE THR GLU LYS GLU ASN ALA SEQRES 39 A 761 LEU LYS GLU VAL LYS GLY ALA TYR ARG GLU ALA LEU PHE SEQRES 40 A 761 SER TYR PHE GLU GLU TYR GLN LYS GLY GLU GLY LYS TRP SEQRES 41 A 761 ASP GLN ALA LYS LEU ASP GLN LEU LYS ASN GLN VAL ASP SEQRES 42 A 761 GLY TYR GLU LYS SER ILE LYS LYS GLN GLU SER ALA ILE SEQRES 43 A 761 TYR GLU LEU HIS ASN GLN ILE ASP ALA LEU ARG LYS ALA SEQRES 44 A 761 TYR TYR THR GLU HIS LYS GLY GLN ILE ASN LYS ALA LEU SEQRES 45 A 761 GLN GLU LEU LYS GLU GLN ILE SER PRO VAL ILE GLN ASN SEQRES 46 A 761 LYS GLU THR ASP PRO GLU THR LYS SER ARG LEU GLN HIS SEQRES 47 A 761 PHE TYR ASN SER CYS ALA TYR LEU THR GLN ALA GLN GLU SEQRES 48 A 761 LEU TYR TYR GLU ASN THR TRP HIS HIS GLY LYS ASN ASN SEQRES 49 A 761 PHE LYS LEU GLN THR LEU MET ALA SER LEU SER CYS GLU SEQRES 50 A 761 LEU ASP TYR ALA ASN THR LYS GLY SER LYS SER ASN ASN SEQRES 51 A 761 ASP ARG GLY GLN ARG LEU ALA GLN LYS ILE VAL GLY ASN SEQRES 52 A 761 ALA LEU TRP THR ALA MET SER GLU ASP GLY LEU TYR THR SEQRES 53 A 761 GLY GLU PHE LEU ASP HIS ARG ARG THR HIS GLY LYS GLU SEQRES 54 A 761 VAL SER ASN VAL GLU GLN LEU ASP ARG GLU LEU THR THR SEQRES 55 A 761 ILE GLN ALA LEU HIS HIS THR ALA ASN THR GLY VAL SER SEQRES 56 A 761 GLY GLY LYS PHE GLU ILE GLN ASP LYS ALA ASN PHE ALA SEQRES 57 A 761 ASP ASN GLY LEU PHE GLY LYS VAL ALA ASN PHE ALA LYS SEQRES 58 A 761 ILE LYS GLU MET GLY PRO GLU ASN ALA PHE THR LYS ASN SEQRES 59 A 761 MET GLY THR LYS ILE LYS ALA HET PO4 A 801 5 HET HG A 802 1 HET HG A 803 1 HET HG A 804 1 HETNAM PO4 PHOSPHATE ION HETNAM HG MERCURY (II) ION FORMUL 2 PO4 O4 P 3- FORMUL 3 HG 3(HG 2+) FORMUL 6 HOH *69(H2 O) HELIX 1 1 ASN A 7 LEU A 16 1 10 HELIX 2 2 PRO A 23 GLN A 27 5 5 HELIX 3 3 ASP A 69 ASP A 92 1 24 HELIX 4 4 GLU A 96 ILE A 119 1 24 HELIX 5 5 PRO A 120 ALA A 124 5 5 HELIX 6 6 SER A 134 GLY A 163 1 30 HELIX 7 7 LYS A 165 SER A 178 1 14 HELIX 8 8 THR A 210 MET A 217 1 8 HELIX 9 9 PRO A 274 LYS A 279 5 6 HELIX 10 10 ASP A 282 ARG A 311 1 30 HELIX 11 11 THR A 313 LYS A 320 1 8 HELIX 12 12 PRO A 322 ARG A 326 5 5 HELIX 13 13 ASP A 333 HIS A 348 1 16 HELIX 14 14 ASN A 371 ASP A 387 1 17 HELIX 15 15 ASP A 432 VAL A 435 5 4 HELIX 16 16 THR A 436 ALA A 459 1 24 HELIX 17 17 GLN A 460 LEU A 462 5 3 HELIX 18 18 TYR A 465 LYS A 476 1 12 HELIX 19 19 VAL A 480 LEU A 494 1 15 HELIX 20 20 LEU A 494 GLN A 513 1 20 HELIX 21 21 GLY A 515 TRP A 519 5 5 HELIX 22 22 ASP A 520 ASN A 584 1 65 HELIX 23 23 ASP A 588 GLU A 614 1 27 HELIX 24 24 HIS A 619 ASN A 623 5 5 HELIX 25 25 PHE A 624 LEU A 637 1 14 HELIX 26 26 ASP A 650 MET A 668 1 19 HELIX 27 27 GLY A 676 HIS A 681 1 6 HELIX 28 28 SER A 690 LEU A 699 1 10 HELIX 29 29 LEU A 699 GLY A 712 1 14 HELIX 30 30 ASP A 722 PHE A 726 5 5 HELIX 31 31 LEU A 731 ASN A 737 1 7 HELIX 32 32 PHE A 738 LYS A 740 5 3 SHEET 1 A 6 GLN A 38 LYS A 41 0 SHEET 2 A 6 GLN A 49 ASN A 54 -1 O VAL A 50 N PHE A 40 SHEET 3 A 6 THR A 183 PHE A 188 1 O ARG A 187 N VAL A 53 SHEET 4 A 6 GLU A 198 PRO A 205 -1 O ILE A 201 N HIS A 186 SHEET 5 A 6 ALA A 246 ARG A 253 -1 O ARG A 247 N ILE A 204 SHEET 6 A 6 VAL A 259 SER A 267 -1 O SER A 265 N MET A 248 SHEET 1 B 4 LYS A 390 GLN A 396 0 SHEET 2 B 4 GLU A 402 SER A 415 -1 O VAL A 403 N ILE A 395 SHEET 3 B 4 LEU A 351 GLN A 359 1 N LEU A 351 O GLY A 408 SHEET 4 B 4 ALA A 640 GLY A 644 1 O THR A 642 N THR A 358 LINK SG CYS A 206 HG HG A 802 1555 1555 2.81 LINK O CYS A 206 HG HG A 802 1555 1555 3.06 LINK O PHE A 598 HG HG A 804 1555 1555 2.86 LINK SG CYS A 602 HG HG A 804 1555 1555 2.66 LINK SG CYS A 635 HG HG A 803 1555 1555 2.61 CISPEP 1 GLY A 268 PRO A 269 0 2.81 SITE 1 AC1 7 SER A 645 LYS A 646 SER A 647 ASN A 648 SITE 2 AC1 7 ASN A 649 ASP A 650 ARG A 651 SITE 1 AC2 3 CYS A 206 MET A 245 THR A 303 SITE 1 AC3 2 CYS A 635 GLU A 636 SITE 1 AC4 4 LEU A 455 PHE A 598 SER A 601 CYS A 602 CRYST1 71.835 115.709 125.114 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013921 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008642 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007993 0.00000