HEADER TRANSLATION 04-JUL-12 4FYL OBSLTE 06-MAR-13 4FYL 4HEI TITLE HIGH-RESOLUTION X-RAY STRUCTURE OF HPF FROM VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME HIBERNATION PROTEIN YHBH; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: 0395N1(DELTA) TOXT KEYWDS BETA-ALPHA-BETA-BETA-BETA-ALPHA SECONDARY STRUCTURE FOLD SIMILAR TO KEYWDS 2 YFIA OF E. COLI, ASSOCIATES WITH 100S RIBOSOME DIMERS, STATIONARY KEYWDS 3 PHASE, TRANSLATION INHIBITION, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR H.DE BARI,E.A.BERRY REVDAT 2 06-MAR-13 4FYL 1 OBSLTE REVDAT 1 15-AUG-12 4FYL 0 JRNL AUTH H.DE BARI,E.A.BERRY JRNL TITL STRUCTURE OF VIBRIO CHOLERAE HIBERNATION PROMOTING FACTOR AT JRNL TITL 2 HIGH RESOLUTION: MAKING SENSE OF TRANSLATIONAL INHIBITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2395323.590 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 73.6 REMARK 3 NUMBER OF REFLECTIONS : 19305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.272 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1066 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 28.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 977 REMARK 3 BIN R VALUE (WORKING SET) : 0.4200 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 55 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.048 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1496 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.86000 REMARK 3 B22 (A**2) : 2.86000 REMARK 3 B33 (A**2) : -5.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.59 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.480 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.300 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.010 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.510 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 41.01 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : &_1_TOPOLOGY_INFILE_1 REMARK 3 TOPOLOGY FILE 2 : &_1_TOPOLOGY_INFILE_2 REMARK 3 TOPOLOGY FILE 3 : &_1_TOPOLOGY_INFILE_3 REMARK 3 TOPOLOGY FILE 4 : &_1_TOPOLOGY_INFILE_4 REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ALTHOUGH DATA TO 1.6 A WAS USED, THE REMARK 3 COMPLETENESS AT THAT RESOLUTION WAS VERY LOW (CORNERS OF THE REMARK 3 DETECTOR), AND ADDITIONALLY WE EXCLUDED THE RESOLUTION ZONE 1.86- REMARK 3 1.95 TO AVOID ICE PROBLEMS. THE NUMBER OF REFLECTIONS ACTUALLY REMARK 3 USED IN REFINEMENT (TEST + WORKING) IS EQUAL TO THE NUMBER THAT REMARK 3 WOULD CONSTITUTE A COMPLETE DATASET TO 1.777 A. THEREFORE WE REMARK 3 CONSIDER THE EFFECTIVE RESOLUTION OF THE STRUCTURE TO BE 1.777 A REMARK 4 REMARK 4 4FYL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-12. REMARK 100 THE RCSB ID CODE IS RCSB073514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : DOUBLE SI(111) REMARK 200 OPTICS : FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19305 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 43.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 72.8 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 12.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48400 REMARK 200 FOR SHELL : 1.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M AMMONIUM SULFATE, 0.01 M CO(II) REMARK 280 CL2, 0.1M MES 6.5 ADDITIVE 2M SODIUM THIOCYANATE MIXED ABOVE REMARK 280 COMPONENTS WITH EQUAL VOLUME OF PROTEIN, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.24600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 23.17700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 23.17700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.62300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 23.17700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 23.17700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.86900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 23.17700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.17700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.62300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 23.17700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.17700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 130.86900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.24600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 93 REMARK 465 SER A 94 REMARK 465 HIS A 95 REMARK 465 LEU B 92 REMARK 465 SER B 93 REMARK 465 SER B 94 REMARK 465 HIS B 95 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 89 CD CE NZ REMARK 470 GLU A 90 CD OE1 OE2 REMARK 470 LYS A 91 CB CG CD CE NZ REMARK 470 LEU A 92 CG CD1 CD2 REMARK 470 FME B 1 O1 REMARK 470 GLU B 90 CD OE1 OE2 REMARK 470 LYS B 91 CA C O CB CG CD CE REMARK 470 LYS B 91 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 209 O HOH B 209 7556 2.00 REMARK 500 OD1 ASP B 66 OD1 ASP B 66 7556 2.18 REMARK 500 O1 UNL B 107 O1 UNL B 107 7556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 -103.84 -94.43 REMARK 500 LYS A 45 -113.83 59.99 REMARK 500 LEU B 12 84.92 -67.96 REMARK 500 ASN B 35 -104.10 -94.45 REMARK 500 LYS B 45 -128.48 69.63 REMARK 500 VAL B 56 -161.72 -113.31 REMARK 500 GLU B 90 54.73 -93.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 UNL A 106 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 3CO A 102 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 219 O REMARK 620 2 HIS A 55 ND1 110.2 REMARK 620 3 GLU B 51 OE2 129.1 100.6 REMARK 620 4 HOH B 202 O 108.4 94.3 108.5 REMARK 620 5 GLU B 51 OE1 82.4 160.0 59.9 96.3 REMARK 620 6 GLU B 51 CD 106.2 130.4 30.0 105.0 29.9 REMARK 620 7 HIS A 55 CE1 122.9 26.5 74.9 108.6 133.5 104.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 3CO A 101 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 64 NE2 REMARK 620 2 GLU B 60 OE1 119.0 REMARK 620 3 HIS A 62 NE2 93.3 102.5 REMARK 620 4 HOH A 201 O 118.6 114.4 102.7 REMARK 620 5 GLU B 60 OE2 88.4 57.8 157.6 96.0 REMARK 620 6 GLU B 60 CD 105.6 28.9 130.9 106.6 28.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 3CO B 101 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 60 OE2 REMARK 620 2 HIS B 64 NE2 120.5 REMARK 620 3 HIS B 62 NE2 123.2 103.2 REMARK 620 4 HOH A 204 O 94.3 112.5 100.8 REMARK 620 5 GLU A 60 OE1 57.5 91.0 89.9 150.7 REMARK 620 6 GLU A 60 CD 29.6 102.3 112.6 123.9 29.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 3CO B 102 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 202 O REMARK 620 2 GLU A 51 OE2 143.7 REMARK 620 3 HIS B 55 ND1 114.2 99.6 REMARK 620 4 HOH B 201 O 96.4 99.2 85.5 REMARK 620 5 GLU B 60 OE2 85.6 81.5 89.9 175.4 REMARK 620 6 GLU A 51 OE1 87.5 59.2 158.3 92.8 91.5 REMARK 620 7 GLU A 51 CD 115.3 29.7 129.4 99.0 83.9 29.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3CO A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3CO A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3CO B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3CO B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 104 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RQL RELATED DB: PDB REMARK 900 E. COLI HPF SOLUTION STRUCTURE DBREF 4FYL A 2 95 UNP C3NV76 C3NV76_VIBCJ 2 95 DBREF 4FYL B 2 95 UNP C3NV76 C3NV76_VIBCJ 2 95 SEQADV 4FYL FME A 1 UNP C3NV76 EXPRESSION TAG SEQADV 4FYL FME B 1 UNP C3NV76 EXPRESSION TAG SEQRES 1 A 95 FME GLN ILE ASN ILE GLN GLY HIS HIS ILE ASP LEU THR SEQRES 2 A 95 ASP SER MET GLN ASP TYR VAL HIS SER LYS PHE ASP LYS SEQRES 3 A 95 LEU GLU ARG PHE PHE ASP HIS ILE ASN HIS VAL GLN VAL SEQRES 4 A 95 ILE LEU ARG VAL GLU LYS LEU ARG GLN ILE ALA GLU ALA SEQRES 5 A 95 THR LEU HIS VAL ASN GLN ALA GLU ILE HIS ALA HIS ALA SEQRES 6 A 95 ASP ASP GLU ASN MET TYR ALA ALA ILE ASP SER LEU VAL SEQRES 7 A 95 ASP LYS LEU VAL ARG GLN LEU ASN LYS HIS LYS GLU LYS SEQRES 8 A 95 LEU SER SER HIS SEQRES 1 B 95 FME GLN ILE ASN ILE GLN GLY HIS HIS ILE ASP LEU THR SEQRES 2 B 95 ASP SER MET GLN ASP TYR VAL HIS SER LYS PHE ASP LYS SEQRES 3 B 95 LEU GLU ARG PHE PHE ASP HIS ILE ASN HIS VAL GLN VAL SEQRES 4 B 95 ILE LEU ARG VAL GLU LYS LEU ARG GLN ILE ALA GLU ALA SEQRES 5 B 95 THR LEU HIS VAL ASN GLN ALA GLU ILE HIS ALA HIS ALA SEQRES 6 B 95 ASP ASP GLU ASN MET TYR ALA ALA ILE ASP SER LEU VAL SEQRES 7 B 95 ASP LYS LEU VAL ARG GLN LEU ASN LYS HIS LYS GLU LYS SEQRES 8 B 95 LEU SER SER HIS MODRES 4FYL FME A 1 MET N-FORMYLMETHIONINE MODRES 4FYL FME B 1 MET N-FORMYLMETHIONINE HET FME A 1 10 HET FME B 1 9 HET 3CO A 101 1 HET 3CO A 102 1 HET CL A 103 1 HET CL A 104 1 HET UNL A 105 1 HET UNL A 106 1 HET UNL A 108 1 HET 3CO B 101 1 HET 3CO B 102 1 HET CL B 103 1 HET CL B 104 1 HET UNL B 105 1 HET UNL B 106 1 HET UNL B 107 1 HETNAM FME N-FORMYLMETHIONINE HETNAM 3CO COBALT (III) ION HETNAM CL CHLORIDE ION HETNAM UNL UNKNOWN LIGAND FORMUL 1 FME 2(C6 H11 N O3 S) FORMUL 3 3CO 4(CO 3+) FORMUL 5 CL 4(CL 1-) FORMUL 17 HOH *50(H2 O) HELIX 1 1 THR A 13 GLU A 28 1 16 HELIX 2 2 ASN A 69 LEU A 92 1 24 HELIX 3 3 THR B 13 PHE B 31 1 19 HELIX 4 4 ASN B 69 GLU B 90 1 22 SHEET 1 A 4 GLN A 2 HIS A 8 0 SHEET 2 A 4 ILE A 34 GLU A 44 1 O VAL A 39 N GLN A 6 SHEET 3 A 4 ARG A 47 VAL A 56 -1 O ILE A 49 N ARG A 42 SHEET 4 A 4 ALA A 59 ASP A 67 -1 O ILE A 61 N LEU A 54 SHEET 1 B 4 GLN B 2 HIS B 8 0 SHEET 2 B 4 HIS B 36 GLU B 44 1 O VAL B 37 N GLN B 2 SHEET 3 B 4 ARG B 47 VAL B 56 -1 O ILE B 49 N ARG B 42 SHEET 4 B 4 ALA B 59 ASP B 67 -1 O ASP B 67 N GLN B 48 LINK C FME A 1 N GLN A 2 1555 1555 1.33 LINK C FME B 1 N GLN B 2 1555 1555 1.33 LINK CO 3CO A 102 O HOH B 219 1555 1555 1.86 LINK ND1 HIS A 55 CO 3CO A 102 1555 1555 2.02 LINK OE2 GLU B 51 CO 3CO A 102 1555 1555 2.10 LINK CO 3CO A 102 O HOH B 202 1555 1555 2.14 LINK OE1 GLU B 51 CO 3CO A 102 1555 1555 2.29 LINK CD GLU B 51 CO 3CO A 102 1555 1555 2.50 LINK CE1 HIS A 55 CO 3CO A 102 1555 1555 2.78 LINK NE2 HIS A 64 CO 3CO A 101 1555 1555 1.93 LINK OE2 GLU A 60 CO 3CO B 101 1555 1555 1.98 LINK NE2 HIS B 64 CO 3CO B 101 1555 1555 2.01 LINK NE2 HIS B 62 CO 3CO B 101 1555 1555 2.03 LINK OE1 GLU B 60 CO 3CO A 101 1555 1555 2.06 LINK NE2 HIS A 62 CO 3CO A 101 1555 1555 2.07 LINK CO 3CO B 102 O HOH A 202 1555 1555 2.07 LINK OE2 GLU A 51 CO 3CO B 102 1555 1555 2.09 LINK ND1 HIS B 55 CO 3CO B 102 1555 1555 2.11 LINK CO 3CO B 101 O HOH A 204 1555 1555 2.14 LINK CO 3CO A 101 O HOH A 201 1555 1555 2.17 LINK CO 3CO B 102 O HOH B 201 1555 1555 2.23 LINK OE2 GLU B 60 CO 3CO B 102 1555 1555 2.26 LINK OE1 GLU A 51 CO 3CO B 102 1555 1555 2.34 LINK OE2 GLU B 60 CO 3CO A 101 1555 1555 2.46 LINK OE1 GLU A 60 CO 3CO B 101 1555 1555 2.48 LINK CD GLU A 60 CO 3CO B 101 1555 1555 2.49 LINK CD GLU A 51 CO 3CO B 102 1555 1555 2.52 LINK CD GLU B 60 CO 3CO A 101 1555 1555 2.56 SITE 1 AC1 4 HIS A 62 HIS A 64 HOH A 201 GLU B 60 SITE 1 AC2 4 HIS A 55 GLU B 51 HOH B 202 HOH B 219 SITE 1 AC3 3 GLN A 38 THR A 53 HOH A 201 SITE 1 AC4 3 HIS A 36 HIS B 8 HOH B 202 SITE 1 AC5 4 GLU A 60 HOH A 204 HIS B 62 HIS B 64 SITE 1 AC6 5 GLU A 51 HOH A 202 HIS B 55 GLU B 60 SITE 2 AC6 5 HOH B 201 SITE 1 AC7 3 HOH A 204 GLN B 38 THR B 53 SITE 1 AC8 3 HIS A 8 HIS B 36 HOH B 201 CRYST1 46.354 46.354 174.492 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021573 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005731 0.00000 HETATM 1 N FME A 1 -7.728 11.694 69.511 1.00 46.67 N HETATM 2 CN FME A 1 -7.674 10.386 69.267 1.00 47.61 C HETATM 3 O1 FME A 1 -8.217 9.539 69.981 1.00 47.86 O HETATM 4 CA FME A 1 -6.739 12.614 68.960 1.00 44.90 C HETATM 5 CB FME A 1 -6.422 12.235 67.506 1.00 45.94 C HETATM 6 CG FME A 1 -5.468 13.188 66.794 1.00 46.24 C HETATM 7 SD FME A 1 -4.902 12.580 65.183 1.00 47.70 S HETATM 8 CE FME A 1 -6.346 12.924 64.159 1.00 45.68 C HETATM 9 C FME A 1 -7.167 14.081 69.024 1.00 44.20 C HETATM 10 O FME A 1 -8.169 14.479 68.425 1.00 43.52 O