HEADER OXIDOREDUCTASE 05-JUL-12 4FYU TITLE CRYSTAL STRUCTURE OF THIOREDOXIN FROM WUCHERERIA BANCROFTI AT 2.0 TITLE 2 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WUCHERERIA BANCROFTI; SOURCE 3 ORGANISM_COMMON: AGENT OF LYMPHATIC FILARIASIS; SOURCE 4 ORGANISM_TAXID: 6293; SOURCE 5 GENE: TRX, TRX-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PRSET B KEYWDS FIVE PARALLEL AND ANTI PARALLEL BETA SHEET, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.YOUSEF,P.PRABHU,A.AHMED,S.IQBAL,C.BETZEL REVDAT 2 15-NOV-17 4FYU 1 REMARK REVDAT 1 07-AUG-13 4FYU 0 JRNL AUTH Y.NASSER,P.PRABHU,A.AHMED,S.IQBAL,C.BETZEL JRNL TITL CRYSTAL STRUCTURE OF THIOREDOXIN FROM WUCHERERIA BANCROFTI JRNL TITL 2 AT 2.0 ANGSTROM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 33371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1771 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2196 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3389 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 349 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : 0.58000 REMARK 3 B33 (A**2) : -1.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.474 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3475 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3274 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4705 ; 2.015 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7567 ; 0.986 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 6.760 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;40.484 ;25.742 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 576 ;15.257 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 6.876 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 514 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3897 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 743 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2155 ; 1.111 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3470 ; 1.906 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1320 ; 3.387 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1235 ; 4.862 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073523. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : SI (III) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35142 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLECULAR REPLACMENT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS HCL PH 5.6, 200MM NACL, 24% REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 56.30500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 56.30500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 81.02500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 56.30500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 56.30500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 81.02500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 56.30500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 56.30500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 81.02500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 56.30500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 56.30500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 81.02500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 56.30500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 56.30500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 81.02500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 56.30500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 56.30500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 81.02500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 56.30500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 56.30500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 81.02500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 56.30500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 56.30500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 81.02500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -56.30500 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 -56.30500 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -81.02500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 98 NZ REMARK 480 ILE B 8 CG2 REMARK 480 LYS B 18 NZ REMARK 480 LYS B 19 CD CE NZ REMARK 480 ASP B 59 OD1 REMARK 480 LYS B 98 CE REMARK 480 ILE C 8 CD1 REMARK 480 ASP C 14 O REMARK 480 THR C 16 CG2 REMARK 480 VAL C 17 CG2 REMARK 480 LYS C 18 CE NZ REMARK 480 LYS C 19 CE NZ REMARK 480 ASP C 22 OD1 REMARK 480 HIS C 37 NE2 REMARK 480 GLU C 73 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 86 -164.86 -102.16 REMARK 500 ALA A 106 -69.12 -131.45 REMARK 500 ASN A 124 45.87 -100.36 REMARK 500 ALA A 133 87.90 -171.10 REMARK 500 ASN B 26 -1.72 76.67 REMARK 500 SER B 82 -16.41 -141.33 REMARK 500 ALA B 106 -68.57 -127.12 REMARK 500 ASN B 124 51.11 -98.98 REMARK 500 ALA B 133 89.81 -165.12 REMARK 500 ASP C 57 61.17 35.17 REMARK 500 TRP C 86 -169.44 -111.84 REMARK 500 ALA C 106 -75.22 -131.55 REMARK 500 ASN C 124 39.39 -97.83 REMARK 500 ALA C 133 87.68 -168.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 202 DBREF 4FYU A 1 145 UNP Q8ISA0 Q8ISA0_WUCBA 1 145 DBREF 4FYU B 1 145 UNP Q8ISA0 Q8ISA0_WUCBA 1 145 DBREF 4FYU C 1 145 UNP Q8ISA0 Q8ISA0_WUCBA 1 145 SEQRES 1 A 145 MET ALA ASP LEU LEU ALA ASN ILE ASP LEU LYS LYS ALA SEQRES 2 A 145 ASP GLY THR VAL LYS LYS GLY SER ASP ALA LEU ALA ASN SEQRES 3 A 145 LYS LYS VAL VAL ALA LEU TYR PHE SER ALA HIS TRP CYS SEQRES 4 A 145 PRO PRO CYS ARG GLN PHE THR PRO ILE LEU LYS GLU PHE SEQRES 5 A 145 TYR GLU GLU VAL ASP ASP ASP GLN PHE GLU ILE VAL PHE SEQRES 6 A 145 VAL SER LEU ASP HIS SER GLU GLU ASP LEU ASN ASN TYR SEQRES 7 A 145 VAL LYS GLU SER HIS GLY ASP TRP TYR HIS VAL PRO PHE SEQRES 8 A 145 GLY SER SER GLU ILE GLU LYS LEU LYS ASN LYS TYR GLU SEQRES 9 A 145 VAL ALA GLY ILE PRO MET LEU ILE VAL ILE LYS SER ASP SEQRES 10 A 145 GLY ASN VAL ILE THR LYS ASN GLY ARG ALA ASP VAL SER SEQRES 11 A 145 GLY LYS ALA PRO PRO GLN THR LEU SER SER TRP LEU ALA SEQRES 12 A 145 ALA ALA SEQRES 1 B 145 MET ALA ASP LEU LEU ALA ASN ILE ASP LEU LYS LYS ALA SEQRES 2 B 145 ASP GLY THR VAL LYS LYS GLY SER ASP ALA LEU ALA ASN SEQRES 3 B 145 LYS LYS VAL VAL ALA LEU TYR PHE SER ALA HIS TRP CYS SEQRES 4 B 145 PRO PRO CYS ARG GLN PHE THR PRO ILE LEU LYS GLU PHE SEQRES 5 B 145 TYR GLU GLU VAL ASP ASP ASP GLN PHE GLU ILE VAL PHE SEQRES 6 B 145 VAL SER LEU ASP HIS SER GLU GLU ASP LEU ASN ASN TYR SEQRES 7 B 145 VAL LYS GLU SER HIS GLY ASP TRP TYR HIS VAL PRO PHE SEQRES 8 B 145 GLY SER SER GLU ILE GLU LYS LEU LYS ASN LYS TYR GLU SEQRES 9 B 145 VAL ALA GLY ILE PRO MET LEU ILE VAL ILE LYS SER ASP SEQRES 10 B 145 GLY ASN VAL ILE THR LYS ASN GLY ARG ALA ASP VAL SER SEQRES 11 B 145 GLY LYS ALA PRO PRO GLN THR LEU SER SER TRP LEU ALA SEQRES 12 B 145 ALA ALA SEQRES 1 C 145 MET ALA ASP LEU LEU ALA ASN ILE ASP LEU LYS LYS ALA SEQRES 2 C 145 ASP GLY THR VAL LYS LYS GLY SER ASP ALA LEU ALA ASN SEQRES 3 C 145 LYS LYS VAL VAL ALA LEU TYR PHE SER ALA HIS TRP CYS SEQRES 4 C 145 PRO PRO CYS ARG GLN PHE THR PRO ILE LEU LYS GLU PHE SEQRES 5 C 145 TYR GLU GLU VAL ASP ASP ASP GLN PHE GLU ILE VAL PHE SEQRES 6 C 145 VAL SER LEU ASP HIS SER GLU GLU ASP LEU ASN ASN TYR SEQRES 7 C 145 VAL LYS GLU SER HIS GLY ASP TRP TYR HIS VAL PRO PHE SEQRES 8 C 145 GLY SER SER GLU ILE GLU LYS LEU LYS ASN LYS TYR GLU SEQRES 9 C 145 VAL ALA GLY ILE PRO MET LEU ILE VAL ILE LYS SER ASP SEQRES 10 C 145 GLY ASN VAL ILE THR LYS ASN GLY ARG ALA ASP VAL SER SEQRES 11 C 145 GLY LYS ALA PRO PRO GLN THR LEU SER SER TRP LEU ALA SEQRES 12 C 145 ALA ALA HET GOL A 201 6 HET PEG A 202 7 HET PEG B 201 7 HET PEG B 202 7 HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL C3 H8 O3 FORMUL 5 PEG 3(C4 H10 O3) FORMUL 8 HOH *349(H2 O) HELIX 1 1 GLY A 20 LEU A 24 1 5 HELIX 2 2 CYS A 39 ASP A 57 1 19 HELIX 3 3 SER A 71 HIS A 83 1 13 HELIX 4 4 SER A 94 TYR A 103 1 10 HELIX 5 5 ASN A 124 GLY A 131 1 8 HELIX 6 6 ALA A 133 ALA A 144 1 12 HELIX 7 7 GLY B 20 LEU B 24 1 5 HELIX 8 8 CYS B 39 ASP B 57 1 19 HELIX 9 9 SER B 71 HIS B 83 1 13 HELIX 10 10 SER B 94 GLU B 104 1 11 HELIX 11 11 ASN B 124 GLY B 131 1 8 HELIX 12 12 ALA B 133 ALA B 144 1 12 HELIX 13 13 GLY C 20 LEU C 24 1 5 HELIX 14 14 CYS C 39 ASP C 57 1 19 HELIX 15 15 SER C 71 HIS C 83 1 13 HELIX 16 16 SER C 94 GLU C 104 1 11 HELIX 17 17 ASN C 124 GLY C 131 1 8 HELIX 18 18 ALA C 133 ALA C 144 1 12 SHEET 1 A 2 ASP A 9 LYS A 11 0 SHEET 2 A 2 VAL A 17 LYS A 19 -1 O LYS A 18 N LEU A 10 SHEET 1 B 5 TYR A 87 HIS A 88 0 SHEET 2 B 5 PHE A 61 SER A 67 1 N PHE A 65 O TYR A 87 SHEET 3 B 5 VAL A 29 SER A 35 1 N TYR A 33 O VAL A 66 SHEET 4 B 5 MET A 110 LYS A 115 -1 O ILE A 114 N VAL A 30 SHEET 5 B 5 VAL A 120 THR A 122 -1 O ILE A 121 N VAL A 113 SHEET 1 C 2 ASP B 9 LYS B 11 0 SHEET 2 C 2 VAL B 17 LYS B 19 -1 O LYS B 18 N LEU B 10 SHEET 1 D 5 TYR B 87 HIS B 88 0 SHEET 2 D 5 PHE B 61 SER B 67 1 N PHE B 65 O TYR B 87 SHEET 3 D 5 VAL B 29 SER B 35 1 N TYR B 33 O VAL B 66 SHEET 4 D 5 MET B 110 LYS B 115 -1 O ILE B 114 N VAL B 30 SHEET 5 D 5 VAL B 120 THR B 122 -1 O ILE B 121 N VAL B 113 SHEET 1 E 2 ASP C 9 LYS C 11 0 SHEET 2 E 2 VAL C 17 LYS C 19 -1 O LYS C 18 N LEU C 10 SHEET 1 F 5 TYR C 87 HIS C 88 0 SHEET 2 F 5 PHE C 61 SER C 67 1 N PHE C 65 O TYR C 87 SHEET 3 F 5 VAL C 29 SER C 35 1 N TYR C 33 O VAL C 66 SHEET 4 F 5 MET C 110 LYS C 115 -1 O ILE C 114 N VAL C 30 SHEET 5 F 5 VAL C 120 THR C 122 -1 O ILE C 121 N VAL C 113 SSBOND 1 CYS A 39 CYS A 42 1555 1555 2.26 SSBOND 2 CYS B 39 CYS B 42 1555 1555 2.58 SSBOND 3 CYS C 39 CYS C 42 1555 1555 2.13 CISPEP 1 ILE A 108 PRO A 109 0 1.02 CISPEP 2 ILE B 108 PRO B 109 0 2.31 CISPEP 3 ILE C 108 PRO C 109 0 4.87 SITE 1 AC1 5 LYS A 11 ALA A 13 GLY A 15 HOH A 392 SITE 2 AC1 5 GLU C 81 SITE 1 AC2 10 GLU A 97 LYS A 100 ASN A 101 VAL A 105 SITE 2 AC2 10 ALA A 106 HOH A 370 HOH A 423 LYS B 100 SITE 3 AC2 10 VAL B 105 ALA B 106 SITE 1 AC3 8 ASN A 101 LYS A 102 HOH A 349 HOH A 421 SITE 2 AC3 8 PRO B 135 GLN B 136 SER B 139 HOH B 301 SITE 1 AC4 7 HOH A 384 TRP B 38 CYS B 39 PRO B 40 SITE 2 AC4 7 GLY B 107 ILE B 108 HOH B 394 CRYST1 112.610 112.610 162.050 90.00 90.00 90.00 I 4 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008880 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006171 0.00000