HEADER IMMUNE SYSTEM 06-JUL-12 4FZ5 TITLE CRYSTAL STRUCTURE OF HUMAN TIRAP TIR-DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL/INTERLEUKIN-1 RECEPTOR DOMAIN-CONTAINING ADAPTER COMPND 3 PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: TIR DOMAIN, UNP RESIDUES 72-221; COMPND 6 SYNONYM: TIR DOMAIN-CONTAINING ADAPTER PROTEIN, ADAPTOR PROTEIN COMPND 7 WYATT, MYD88 ADAPTER-LIKE PROTEIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TIRAP, MAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIRAP, SCAFFOLD, MYD88, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WOO,S.KIM,S.E.SHOELSON,S.PARK REVDAT 2 08-NOV-23 4FZ5 1 SEQADV REVDAT 1 29-MAY-13 4FZ5 0 JRNL AUTH J.R.WOO,S.KIM,S.E.SHOELSON,S.PARK JRNL TITL X-RAY CRYSTALLOGRAPHIC STRUCTURE OF TIR-DOMAIN FROM THE JRNL TITL 2 HUMAN TIR-DOMAIN CONTAINING ADAPTOR PROTEIN/MYD88 JRNL TITL 3 ADAPTOR-LIKE PROTEIN (TIRAP/MAL) JRNL REF BULL.KOREAN CHEM.SOC. V. 33 3091 2013 JRNL REFN ISSN 0253-2964 JRNL DOI 10.5012/BKCS.2012.33.9.3091 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 4941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.324 REMARK 3 FREE R VALUE : 0.346 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 457 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1798 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.035 REMARK 3 BOND ANGLES (DEGREES) : 3.152 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FZ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073534. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0809 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4941 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 2Y92 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5%(V/V) PEG200, 0.1M TRIS, PH8.5, REMARK 280 EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.46950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.20425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.73475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.46950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 19.73475 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.20425 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 68 REMARK 465 SER A 69 REMARK 465 HIS A 70 REMARK 465 MET A 71 REMARK 465 THR A 72 REMARK 465 HIS A 73 REMARK 465 ALA A 74 REMARK 465 SER A 75 REMARK 465 ASP A 76 REMARK 465 SER A 77 REMARK 465 GLY A 78 REMARK 465 SER A 79 REMARK 465 THR A 111 REMARK 465 ALA A 112 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 ARG A 115 REMARK 465 CYS A 116 REMARK 465 PHE A 117 REMARK 465 LEU A 118 REMARK 465 GLN A 119 REMARK 465 LEU A 120 REMARK 465 ARG A 121 REMARK 465 ASP A 122 REMARK 465 ALA A 123 REMARK 465 THR A 124 REMARK 465 PRO A 125 REMARK 465 GLY A 126 REMARK 465 VAL A 130 REMARK 465 ALA A 168 REMARK 465 PRO A 169 REMARK 465 GLY A 170 REMARK 465 ALA A 171 REMARK 465 GLU A 172 REMARK 465 MET A 194 REMARK 465 TYR A 195 REMARK 465 TYR A 196 REMARK 465 SER A 221 REMARK 465 GLY B 68 REMARK 465 SER B 69 REMARK 465 HIS B 70 REMARK 465 MET B 71 REMARK 465 THR B 72 REMARK 465 HIS B 73 REMARK 465 ALA B 74 REMARK 465 SER B 75 REMARK 465 ASP B 76 REMARK 465 SER B 77 REMARK 465 GLY B 78 REMARK 465 SER B 110 REMARK 465 THR B 111 REMARK 465 ALA B 112 REMARK 465 SER B 113 REMARK 465 LEU B 114 REMARK 465 ARG B 115 REMARK 465 CYS B 116 REMARK 465 PHE B 117 REMARK 465 LEU B 118 REMARK 465 GLN B 119 REMARK 465 LEU B 120 REMARK 465 ARG B 121 REMARK 465 ASP B 122 REMARK 465 ALA B 123 REMARK 465 THR B 124 REMARK 465 PRO B 125 REMARK 465 GLY B 126 REMARK 465 GLY B 127 REMARK 465 ALA B 128 REMARK 465 ILE B 129 REMARK 465 GLU B 167 REMARK 465 ALA B 168 REMARK 465 PRO B 169 REMARK 465 GLY B 170 REMARK 465 ALA B 171 REMARK 465 GLU B 172 REMARK 465 GLY B 173 REMARK 465 GLU B 190 REMARK 465 SER B 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C TYR A 187 CD PRO A 188 1.78 REMARK 500 O TYR A 187 O PRO A 188 1.79 REMARK 500 O ALA A 136 OG SER A 138 1.80 REMARK 500 O LEU A 133 CB GLN A 135 1.80 REMARK 500 O MET B 161 N ALA B 164 1.93 REMARK 500 O LEU A 162 OG1 THR A 166 2.02 REMARK 500 O PRO B 155 O LYS B 158 2.03 REMARK 500 O GLN A 208 N ALA A 212 2.03 REMARK 500 O ARG A 207 N GLU A 211 2.08 REMARK 500 O ALA A 136 N SER A 138 2.18 REMARK 500 O LEU A 133 CG GLN A 135 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 HIS B 141 NH1 ARG B 184 3544 1.70 REMARK 500 N SER B 83 NH2 ARG B 184 3544 1.90 REMARK 500 CA TRP B 82 NE ARG B 184 3544 1.99 REMARK 500 CB TRP A 82 O ARG A 184 3554 2.03 REMARK 500 N TRP B 82 NH2 ARG B 184 3544 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 188 CD PRO A 188 N -0.250 REMARK 500 TRP B 82 CA TRP B 82 C 0.159 REMARK 500 CYS B 134 CB CYS B 134 SG -0.097 REMARK 500 ARG B 184 CZ ARG B 184 NH1 -0.112 REMARK 500 PHE B 193 CZ PHE B 193 CE2 0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 182 CB - CG - CD1 ANGL. DEV. = -13.1 DEGREES REMARK 500 ALA A 186 CB - CA - C ANGL. DEV. = -10.3 DEGREES REMARK 500 PRO A 188 C - N - CD ANGL. DEV. = -40.1 DEGREES REMARK 500 PRO A 188 CA - N - CD ANGL. DEV. = 16.1 DEGREES REMARK 500 PRO A 188 N - CA - CB ANGL. DEV. = -14.3 DEGREES REMARK 500 CYS B 89 CA - CB - SG ANGL. DEV. = 9.6 DEGREES REMARK 500 LEU B 133 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 LEU B 179 CB - CG - CD1 ANGL. DEV. = -12.3 DEGREES REMARK 500 LEU B 179 CB - CG - CD2 ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG B 184 NH1 - CZ - NH2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG B 184 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 95 -16.57 73.21 REMARK 500 ALA A 128 176.92 -57.79 REMARK 500 GLN A 135 131.94 75.98 REMARK 500 LEU A 137 64.54 3.48 REMARK 500 ARG A 184 34.01 -84.60 REMARK 500 ALA A 185 -93.39 -106.46 REMARK 500 ALA A 186 98.72 -57.40 REMARK 500 TYR A 187 102.03 -172.59 REMARK 500 PRO A 188 165.14 -29.65 REMARK 500 ARG A 192 -28.84 -39.33 REMARK 500 ASP B 85 -43.47 -29.60 REMARK 500 LEU B 107 -166.44 -68.05 REMARK 500 GLU B 108 -125.54 55.04 REMARK 500 LEU B 146 76.02 -110.03 REMARK 500 TYR B 159 -5.83 77.48 REMARK 500 ALA B 164 -178.43 -67.08 REMARK 500 LEU B 165 -133.72 54.16 REMARK 500 ALA B 186 -15.21 97.06 REMARK 500 PHE B 193 22.38 -74.79 REMARK 500 PRO B 202 137.29 -32.87 REMARK 500 REMARK 500 REMARK: NULL DBREF 4FZ5 A 72 221 UNP P58753 TIRAP_HUMAN 72 221 DBREF 4FZ5 B 72 221 UNP P58753 TIRAP_HUMAN 72 221 SEQADV 4FZ5 GLY A 68 UNP P58753 EXPRESSION TAG SEQADV 4FZ5 SER A 69 UNP P58753 EXPRESSION TAG SEQADV 4FZ5 HIS A 70 UNP P58753 EXPRESSION TAG SEQADV 4FZ5 MET A 71 UNP P58753 EXPRESSION TAG SEQADV 4FZ5 GLY B 68 UNP P58753 EXPRESSION TAG SEQADV 4FZ5 SER B 69 UNP P58753 EXPRESSION TAG SEQADV 4FZ5 HIS B 70 UNP P58753 EXPRESSION TAG SEQADV 4FZ5 MET B 71 UNP P58753 EXPRESSION TAG SEQRES 1 A 154 GLY SER HIS MET THR HIS ALA SER ASP SER GLY SER SER SEQRES 2 A 154 ARG TRP SER LYS ASP TYR ASP VAL CYS VAL CYS HIS SER SEQRES 3 A 154 GLU GLU ASP LEU VAL ALA ALA GLN ASP LEU VAL SER TYR SEQRES 4 A 154 LEU GLU GLY SER THR ALA SER LEU ARG CYS PHE LEU GLN SEQRES 5 A 154 LEU ARG ASP ALA THR PRO GLY GLY ALA ILE VAL SER GLU SEQRES 6 A 154 LEU CYS GLN ALA LEU SER SER SER HIS CYS ARG VAL LEU SEQRES 7 A 154 LEU ILE THR PRO GLY PHE LEU GLN ASP PRO TRP CYS LYS SEQRES 8 A 154 TYR GLN MET LEU GLN ALA LEU THR GLU ALA PRO GLY ALA SEQRES 9 A 154 GLU GLY CYS THR ILE PRO LEU LEU SER GLY LEU SER ARG SEQRES 10 A 154 ALA ALA TYR PRO PRO GLU LEU ARG PHE MET TYR TYR VAL SEQRES 11 A 154 ASP GLY ARG GLY PRO ASP GLY GLY PHE ARG GLN VAL LYS SEQRES 12 A 154 GLU ALA VAL MET ARG TYR LEU GLN THR LEU SER SEQRES 1 B 154 GLY SER HIS MET THR HIS ALA SER ASP SER GLY SER SER SEQRES 2 B 154 ARG TRP SER LYS ASP TYR ASP VAL CYS VAL CYS HIS SER SEQRES 3 B 154 GLU GLU ASP LEU VAL ALA ALA GLN ASP LEU VAL SER TYR SEQRES 4 B 154 LEU GLU GLY SER THR ALA SER LEU ARG CYS PHE LEU GLN SEQRES 5 B 154 LEU ARG ASP ALA THR PRO GLY GLY ALA ILE VAL SER GLU SEQRES 6 B 154 LEU CYS GLN ALA LEU SER SER SER HIS CYS ARG VAL LEU SEQRES 7 B 154 LEU ILE THR PRO GLY PHE LEU GLN ASP PRO TRP CYS LYS SEQRES 8 B 154 TYR GLN MET LEU GLN ALA LEU THR GLU ALA PRO GLY ALA SEQRES 9 B 154 GLU GLY CYS THR ILE PRO LEU LEU SER GLY LEU SER ARG SEQRES 10 B 154 ALA ALA TYR PRO PRO GLU LEU ARG PHE MET TYR TYR VAL SEQRES 11 B 154 ASP GLY ARG GLY PRO ASP GLY GLY PHE ARG GLN VAL LYS SEQRES 12 B 154 GLU ALA VAL MET ARG TYR LEU GLN THR LEU SER HELIX 1 1 SER A 80 LYS A 84 5 5 HELIX 2 2 ASP A 96 GLY A 109 1 14 HELIX 3 3 THR A 148 ASP A 154 1 7 HELIX 4 4 ASP A 154 THR A 166 1 13 HELIX 5 5 GLY A 201 GLY A 204 5 4 HELIX 6 6 GLY A 205 ALA A 212 1 8 HELIX 7 7 MET A 214 LEU A 220 1 7 HELIX 8 8 ASP B 96 SER B 105 1 10 HELIX 9 9 GLY B 201 PHE B 206 1 6 HELIX 10 10 PHE B 206 GLN B 218 1 13 SHEET 1 A 4 LEU A 133 CYS A 134 0 SHEET 2 A 4 VAL A 90 CYS A 91 1 N VAL A 90 O CYS A 134 SHEET 3 A 4 CYS A 142 ILE A 147 1 O VAL A 144 N CYS A 91 SHEET 4 A 4 CYS A 174 LEU A 179 1 O ILE A 176 N ARG A 143 SHEET 1 B 4 VAL B 90 CYS B 91 0 SHEET 2 B 4 ARG B 143 ILE B 147 1 O VAL B 144 N CYS B 91 SHEET 3 B 4 THR B 175 LEU B 179 1 O LEU B 178 N ILE B 147 SHEET 4 B 4 VAL B 197 ASP B 198 1 O VAL B 197 N PRO B 177 SSBOND 1 CYS A 89 CYS A 134 1555 1555 2.04 SSBOND 2 CYS A 142 CYS A 174 1555 1555 2.64 SSBOND 3 CYS B 89 CYS B 134 1555 1555 2.91 SSBOND 4 CYS B 142 CYS B 174 1555 1555 2.71 CISPEP 1 CYS A 134 GLN A 135 0 7.08 CRYST1 100.253 100.253 78.939 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009975 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009975 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012668 0.00000