HEADER OXIDOREDUCTASE 06-JUL-12 4FZI TITLE CRYSTAL STRUCTURE OF PROSTAGLANDIN F SYNTHASE FROM TRYPANOSOMA CRUZI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROSTAGLANDIN F SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.188; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 353153; SOURCE 4 STRAIN: CL BRENER; SOURCE 5 GENE: TC00.1047053511287.49; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAVA0421 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, PROSTAGLANDIN D2, TRYPANOSOMIASIS, KEYWDS 4 EUKARYOTIC PATHOGEN, PARASITE, NADP+, NADPH, RUTIN, BIMATOPROST, KEYWDS 5 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 13-SEP-23 4FZI 1 REMARK SEQADV REVDAT 3 03-JUN-15 4FZI 1 JRNL REVDAT 2 13-MAY-15 4FZI 1 JRNL REVDAT 1 18-JUL-12 4FZI 0 JRNL AUTH S.O.MOEN,J.W.FAIRMAN,S.R.BARNES,A.SULLIVAN, JRNL AUTH 2 S.NAKAZAWA-HEWITT,W.C.VAN VOORHIS,B.L.STAKER,D.D.LORIMER, JRNL AUTH 3 P.J.MYLER,T.E.EDWARDS JRNL TITL STRUCTURES OF PROSTAGLANDIN F SYNTHASE FROM THE PROTOZOA JRNL TITL 2 LEISHMANIA MAJOR AND TRYPANOSOMA CRUZI WITH NADP. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 71 609 2015 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 1744-3091 JRNL PMID 25945716 JRNL DOI 10.1107/S2053230X15006883 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 988 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1298 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4252 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.01000 REMARK 3 B22 (A**2) : 1.30000 REMARK 3 B33 (A**2) : -3.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.297 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.206 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.710 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4402 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2891 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5999 ; 1.497 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7010 ; 1.141 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 549 ; 5.729 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;33.441 ;23.768 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 673 ;14.912 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.873 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 656 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4985 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 947 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 0 A 5 A 281 0 REMARK 3 0 B 5 B 301 0 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 281 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2947 15.8795 8.7526 REMARK 3 T TENSOR REMARK 3 T11: 0.1364 T22: 0.0895 REMARK 3 T33: 0.0940 T12: -0.0361 REMARK 3 T13: 0.0017 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.3651 L22: 0.8168 REMARK 3 L33: 0.4206 L12: -0.2359 REMARK 3 L13: -0.0430 L23: 0.2660 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: 0.0276 S13: 0.0357 REMARK 3 S21: 0.0642 S22: -0.0113 S23: 0.0357 REMARK 3 S31: 0.0911 S32: -0.0655 S33: -0.0020 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 280 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6275 14.3181 -31.5631 REMARK 3 T TENSOR REMARK 3 T11: 0.0752 T22: 0.1394 REMARK 3 T33: 0.0706 T12: 0.0091 REMARK 3 T13: 0.0344 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.6755 L22: 0.7340 REMARK 3 L33: 4.0551 L12: 0.3141 REMARK 3 L13: -0.4053 L23: 1.2503 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: 0.0192 S13: 0.0527 REMARK 3 S21: 0.0669 S22: -0.0454 S23: -0.0199 REMARK 3 S31: 0.2135 S32: -0.2153 S33: 0.0051 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4FZI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19336 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 4F40 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRCRA.00019.A.B1 PW35698 AT 18 MG/ML REMARK 280 AGAINST MORPHEUS SCREEN CONDITION H1: 0.1 M MES/IMIDAZOLE, PH REMARK 280 6.5, 10% PEG20000, 20% PEG550 MME, 0.02 M GLUTAMIC ACID, GLYCINE, REMARK 280 SERINE, ALANINE, AND LYSINE, CRYSTAL TRACKING ID 234961H1, KYB3- REMARK 280 12, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.31000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 CYS A 3 REMARK 465 ASN A 4 REMARK 465 GLU A 282 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 CYS B 3 REMARK 465 ASN B 4 REMARK 465 GLY B 194 REMARK 465 GLU B 195 REMARK 465 GLU B 196 REMARK 465 ALA B 197 REMARK 465 GLY B 198 REMARK 465 GLU B 281 REMARK 465 GLU B 282 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 27 CG CD OE1 NE2 REMARK 470 ARG A 95 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 ARG A 240 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 470 ASN A 275 CG OD1 ND2 REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 ASN B 6 CG OD1 ND2 REMARK 470 ARG B 15 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 25 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 27 CG CD OE1 NE2 REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 GLU B 87 CG CD OE1 OE2 REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 GLU B 103 CG CD OE1 OE2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 GLU B 149 CG CD OE1 OE2 REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 LYS B 155 CG CD CE NZ REMARK 470 ARG B 157 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 ASN B 182 CG OD1 ND2 REMARK 470 SER B 193 OG REMARK 470 ILE B 199 CG1 CG2 CD1 REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 HIS B 203 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 470 LYS B 210 CG CD CE NZ REMARK 470 LYS B 211 CG CD CE NZ REMARK 470 ASN B 213 CG OD1 ND2 REMARK 470 ARG B 240 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 251 CG CD CE NZ REMARK 470 GLU B 255 CG CD OE1 OE2 REMARK 470 ARG B 258 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 262 CG CD OE1 OE2 REMARK 470 LYS B 267 CG CD CE NZ REMARK 470 ASN B 275 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 234 O3 SO4 B 302 2.02 REMARK 500 OH TYR A 53 N GLU A 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 146 CG HIS A 146 CD2 0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 175 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 13 -1.66 76.23 REMARK 500 ARG A 25 0.26 80.89 REMARK 500 HIS A 46 117.08 -160.48 REMARK 500 LYS A 115 -51.64 -139.26 REMARK 500 PHE A 277 49.80 -160.30 REMARK 500 SER B 13 -5.05 78.08 REMARK 500 LYS B 115 -48.38 -138.50 REMARK 500 PHE B 277 50.02 -158.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F40 RELATED DB: PDB REMARK 900 PROSTAGLANDIN F SYNTHASE FROM L. MAJOR REMARK 900 RELATED ID: 1VBJ RELATED DB: PDB REMARK 900 PROSTAGLANDIN F SYNTHASE FROM T. BRUCEI REMARK 900 RELATED ID: SSGCID-TRCRA.00019.A RELATED DB: TARGETTRACK DBREF 4FZI A 1 282 UNP Q4DJ07 Q4DJ07_TRYCC 1 282 DBREF 4FZI B 1 282 UNP Q4DJ07 Q4DJ07_TRYCC 1 282 SEQADV 4FZI MET A -7 UNP Q4DJ07 EXPRESSION TAG SEQADV 4FZI ALA A -6 UNP Q4DJ07 EXPRESSION TAG SEQADV 4FZI HIS A -5 UNP Q4DJ07 EXPRESSION TAG SEQADV 4FZI HIS A -4 UNP Q4DJ07 EXPRESSION TAG SEQADV 4FZI HIS A -3 UNP Q4DJ07 EXPRESSION TAG SEQADV 4FZI HIS A -2 UNP Q4DJ07 EXPRESSION TAG SEQADV 4FZI HIS A -1 UNP Q4DJ07 EXPRESSION TAG SEQADV 4FZI HIS A 0 UNP Q4DJ07 EXPRESSION TAG SEQADV 4FZI VAL A 14 UNP Q4DJ07 ALA 14 CONFLICT SEQADV 4FZI TYR A 51 UNP Q4DJ07 CYS 51 CONFLICT SEQADV 4FZI SER A 54 UNP Q4DJ07 ASN 54 CONFLICT SEQADV 4FZI ARG A 57 UNP Q4DJ07 LYS 57 CONFLICT SEQADV 4FZI GLU A 195 UNP Q4DJ07 ASP 195 CONFLICT SEQADV 4FZI GLU A 196 UNP Q4DJ07 ARG 196 CONFLICT SEQADV 4FZI ALA A 197 UNP Q4DJ07 THR 197 CONFLICT SEQADV 4FZI ILE A 199 UNP Q4DJ07 PHE 199 CONFLICT SEQADV 4FZI ALA A 271 UNP Q4DJ07 GLY 271 CONFLICT SEQADV 4FZI ASP A 272 UNP Q4DJ07 HIS 272 CONFLICT SEQADV 4FZI MET B -7 UNP Q4DJ07 EXPRESSION TAG SEQADV 4FZI ALA B -6 UNP Q4DJ07 EXPRESSION TAG SEQADV 4FZI HIS B -5 UNP Q4DJ07 EXPRESSION TAG SEQADV 4FZI HIS B -4 UNP Q4DJ07 EXPRESSION TAG SEQADV 4FZI HIS B -3 UNP Q4DJ07 EXPRESSION TAG SEQADV 4FZI HIS B -2 UNP Q4DJ07 EXPRESSION TAG SEQADV 4FZI HIS B -1 UNP Q4DJ07 EXPRESSION TAG SEQADV 4FZI HIS B 0 UNP Q4DJ07 EXPRESSION TAG SEQADV 4FZI VAL B 14 UNP Q4DJ07 ALA 14 CONFLICT SEQADV 4FZI TYR B 51 UNP Q4DJ07 CYS 51 CONFLICT SEQADV 4FZI SER B 54 UNP Q4DJ07 ASN 54 CONFLICT SEQADV 4FZI ARG B 57 UNP Q4DJ07 LYS 57 CONFLICT SEQADV 4FZI GLU B 195 UNP Q4DJ07 ASP 195 CONFLICT SEQADV 4FZI GLU B 196 UNP Q4DJ07 ARG 196 CONFLICT SEQADV 4FZI ALA B 197 UNP Q4DJ07 THR 197 CONFLICT SEQADV 4FZI ILE B 199 UNP Q4DJ07 PHE 199 CONFLICT SEQADV 4FZI ALA B 271 UNP Q4DJ07 GLY 271 CONFLICT SEQADV 4FZI ASP B 272 UNP Q4DJ07 HIS 272 CONFLICT SEQRES 1 A 290 MET ALA HIS HIS HIS HIS HIS HIS MET ASN CYS ASN TYR SEQRES 2 A 290 ASN CYS VAL THR LEU HIS ASN SER VAL ARG MET PRO GLN SEQRES 3 A 290 LEU GLY LEU GLY VAL TRP ARG ALA GLN ASP GLY ALA GLU SEQRES 4 A 290 THR ALA ASN ALA VAL ARG TRP ALA ILE GLU ALA GLY TYR SEQRES 5 A 290 ARG HIS ILE ASP THR ALA TYR ILE TYR SER ASN GLU ARG SEQRES 6 A 290 GLY VAL GLY GLN GLY ILE ARG GLU SER GLY VAL PRO ARG SEQRES 7 A 290 GLU GLU VAL TRP VAL THR THR LYS VAL TRP ASN SER ASP SEQRES 8 A 290 GLN GLY TYR GLU LYS THR LEU ALA ALA PHE GLU ARG SER SEQRES 9 A 290 ARG GLU LEU LEU GLY LEU GLU TYR ILE ASP LEU TYR LEU SEQRES 10 A 290 ILE HIS TRP PRO GLY LYS LYS LYS PHE VAL ASP THR TRP SEQRES 11 A 290 LYS ALA LEU GLU LYS LEU TYR GLU GLU LYS LYS VAL ARG SEQRES 12 A 290 ALA ILE GLY VAL SER ASN PHE GLU PRO HIS HIS LEU THR SEQRES 13 A 290 GLU LEU PHE LYS SER CYS LYS ILE ARG PRO MET VAL ASN SEQRES 14 A 290 GLN VAL GLU LEU HIS PRO LEU PHE GLN GLN ARG THR LEU SEQRES 15 A 290 ARG GLU PHE CYS LYS GLN HIS ASN ILE ALA ILE THR ALA SEQRES 16 A 290 TRP SER PRO LEU GLY SER GLY GLU GLU ALA GLY ILE LEU SEQRES 17 A 290 LYS ASN HIS VAL LEU GLY GLU ILE ALA LYS LYS HIS ASN SEQRES 18 A 290 LYS SER PRO ALA GLN VAL VAL ILE ARG TRP ASP ILE GLN SEQRES 19 A 290 HIS GLY ILE VAL THR ILE PRO LYS SER THR ASN LYS GLY SEQRES 20 A 290 ARG ILE GLN GLU ASN PHE ASN VAL TRP ASP PHE LYS LEU SEQRES 21 A 290 THR GLU GLU GLU MET ARG GLN ILE ASP GLU LEU ASN GLU SEQRES 22 A 290 ASP LYS ARG ILE GLY ALA ASP PRO ASP ASN PHE PHE PRO SEQRES 23 A 290 GLY GLY GLU GLU SEQRES 1 B 290 MET ALA HIS HIS HIS HIS HIS HIS MET ASN CYS ASN TYR SEQRES 2 B 290 ASN CYS VAL THR LEU HIS ASN SER VAL ARG MET PRO GLN SEQRES 3 B 290 LEU GLY LEU GLY VAL TRP ARG ALA GLN ASP GLY ALA GLU SEQRES 4 B 290 THR ALA ASN ALA VAL ARG TRP ALA ILE GLU ALA GLY TYR SEQRES 5 B 290 ARG HIS ILE ASP THR ALA TYR ILE TYR SER ASN GLU ARG SEQRES 6 B 290 GLY VAL GLY GLN GLY ILE ARG GLU SER GLY VAL PRO ARG SEQRES 7 B 290 GLU GLU VAL TRP VAL THR THR LYS VAL TRP ASN SER ASP SEQRES 8 B 290 GLN GLY TYR GLU LYS THR LEU ALA ALA PHE GLU ARG SER SEQRES 9 B 290 ARG GLU LEU LEU GLY LEU GLU TYR ILE ASP LEU TYR LEU SEQRES 10 B 290 ILE HIS TRP PRO GLY LYS LYS LYS PHE VAL ASP THR TRP SEQRES 11 B 290 LYS ALA LEU GLU LYS LEU TYR GLU GLU LYS LYS VAL ARG SEQRES 12 B 290 ALA ILE GLY VAL SER ASN PHE GLU PRO HIS HIS LEU THR SEQRES 13 B 290 GLU LEU PHE LYS SER CYS LYS ILE ARG PRO MET VAL ASN SEQRES 14 B 290 GLN VAL GLU LEU HIS PRO LEU PHE GLN GLN ARG THR LEU SEQRES 15 B 290 ARG GLU PHE CYS LYS GLN HIS ASN ILE ALA ILE THR ALA SEQRES 16 B 290 TRP SER PRO LEU GLY SER GLY GLU GLU ALA GLY ILE LEU SEQRES 17 B 290 LYS ASN HIS VAL LEU GLY GLU ILE ALA LYS LYS HIS ASN SEQRES 18 B 290 LYS SER PRO ALA GLN VAL VAL ILE ARG TRP ASP ILE GLN SEQRES 19 B 290 HIS GLY ILE VAL THR ILE PRO LYS SER THR ASN LYS GLY SEQRES 20 B 290 ARG ILE GLN GLU ASN PHE ASN VAL TRP ASP PHE LYS LEU SEQRES 21 B 290 THR GLU GLU GLU MET ARG GLN ILE ASP GLU LEU ASN GLU SEQRES 22 B 290 ASP LYS ARG ILE GLY ALA ASP PRO ASP ASN PHE PHE PRO SEQRES 23 B 290 GLY GLY GLU GLU HET GLU A 301 10 HET GLU B 301 10 HET SO4 B 302 5 HETNAM GLU GLUTAMIC ACID HETNAM SO4 SULFATE ION FORMUL 3 GLU 2(C5 H9 N O4) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *84(H2 O) HELIX 1 1 GLY A 29 GLY A 43 1 15 HELIX 2 2 ALA A 50 SER A 54 5 5 HELIX 3 3 ASN A 55 GLY A 67 1 13 HELIX 4 4 PRO A 69 VAL A 73 5 5 HELIX 5 5 TRP A 80 GLN A 84 5 5 HELIX 6 6 GLY A 85 GLY A 101 1 17 HELIX 7 7 LYS A 117 GLU A 131 1 15 HELIX 8 8 GLU A 143 SER A 153 1 11 HELIX 9 9 GLN A 171 HIS A 181 1 11 HELIX 10 10 ASN A 202 ASN A 213 1 12 HELIX 11 11 SER A 215 HIS A 227 1 13 HELIX 12 12 ASN A 237 ASN A 246 1 10 HELIX 13 13 THR A 253 GLU A 262 1 10 HELIX 14 14 ASP A 272 PHE A 276 5 5 HELIX 15 15 GLY B 29 GLY B 43 1 15 HELIX 16 16 ALA B 50 SER B 54 5 5 HELIX 17 17 ASN B 55 GLY B 67 1 13 HELIX 18 18 PRO B 69 VAL B 73 5 5 HELIX 19 19 TRP B 80 GLN B 84 5 5 HELIX 20 20 GLY B 85 GLY B 101 1 17 HELIX 21 21 LYS B 117 GLU B 131 1 15 HELIX 22 22 GLU B 143 LYS B 152 1 10 HELIX 23 23 GLN B 171 HIS B 181 1 11 HELIX 24 24 ASN B 202 HIS B 212 1 11 HELIX 25 25 SER B 215 HIS B 227 1 13 HELIX 26 26 ASN B 237 ASN B 246 1 10 HELIX 27 27 THR B 253 GLU B 262 1 10 HELIX 28 28 ASP B 272 PHE B 276 5 5 SHEET 1 A 2 CYS A 7 THR A 9 0 SHEET 2 A 2 ARG A 15 PRO A 17 -1 O MET A 16 N VAL A 8 SHEET 1 B 8 LEU A 21 GLY A 22 0 SHEET 2 B 8 HIS A 46 ASP A 48 1 O ASP A 48 N LEU A 21 SHEET 3 B 8 TRP A 74 VAL A 79 1 O TRP A 74 N ILE A 47 SHEET 4 B 8 ILE A 105 ILE A 110 1 O LEU A 109 N VAL A 79 SHEET 5 B 8 VAL A 134 SER A 140 1 O GLY A 138 N TYR A 108 SHEET 6 B 8 VAL A 160 GLU A 164 1 O VAL A 160 N VAL A 139 SHEET 7 B 8 ALA A 184 TRP A 188 1 O TRP A 188 N VAL A 163 SHEET 8 B 8 VAL A 230 THR A 231 1 O VAL A 230 N ALA A 187 SHEET 1 C 2 CYS B 7 THR B 9 0 SHEET 2 C 2 ARG B 15 PRO B 17 -1 O MET B 16 N VAL B 8 SHEET 1 D 8 LEU B 21 GLY B 22 0 SHEET 2 D 8 HIS B 46 ASP B 48 1 O ASP B 48 N LEU B 21 SHEET 3 D 8 TRP B 74 VAL B 79 1 O TRP B 74 N ILE B 47 SHEET 4 D 8 ILE B 105 ILE B 110 1 O LEU B 109 N VAL B 79 SHEET 5 D 8 VAL B 134 SER B 140 1 O GLY B 138 N TYR B 108 SHEET 6 D 8 VAL B 160 GLU B 164 1 O VAL B 160 N VAL B 139 SHEET 7 D 8 ALA B 184 TRP B 188 1 O TRP B 188 N VAL B 163 SHEET 8 D 8 VAL B 230 THR B 231 1 O VAL B 230 N ALA B 187 SITE 1 AC1 9 TRP A 24 TYR A 53 TRP A 80 HIS A 111 SITE 2 AC1 9 TRP A 112 ASN A 141 TRP A 188 HOH A 450 SITE 3 AC1 9 HOH A 451 SITE 1 AC2 8 TRP B 24 TYR B 53 TRP B 80 HIS B 111 SITE 2 AC2 8 TRP B 112 SER B 140 ASN B 141 TRP B 188 SITE 1 AC3 6 SER B 189 PRO B 190 LEU B 191 GLY B 192 SITE 2 AC3 6 PRO B 233 LYS B 234 CRYST1 54.560 66.620 87.310 90.00 94.29 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018328 0.000000 0.001377 0.00000 SCALE2 0.000000 0.015011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011486 0.00000