HEADER ANTIMICROBIAL PROTEIN 06-JUL-12 4FZN TITLE CRYSTAL STRUCTURE OF SYRINGACIN M MUTANT D232A FROM PSEUDOMONAS TITLE 2 SYRINGAE PV. TOMATO DC3000 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOCIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. TOMATO; SOURCE 3 ORGANISM_TAXID: 223283; SOURCE 4 STRAIN: DC3000; SOURCE 5 GENE: PSPTO_0572; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21A; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETMDC KEYWDS PHOSPHATASE, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.W.ROSZAK,R.GRINTER,J.R.COGDELL,D.WALKER REVDAT 3 13-SEP-23 4FZN 1 SEQADV REVDAT 2 28-NOV-12 4FZN 1 JRNL REVDAT 1 03-OCT-12 4FZN 0 JRNL AUTH R.GRINTER,A.W.ROSZAK,R.J.COGDELL,J.J.MILNER,D.WALKER JRNL TITL THE CRYSTAL STRUCTURE OF THE LIPID II-DEGRADING BACTERIOCIN JRNL TITL 2 SYRINGACIN M SUGGESTS UNEXPECTED EVOLUTIONARY RELATIONSHIPS JRNL TITL 3 BETWEEN COLICIN M-LIKE BACTERIOCINS. JRNL REF J.BIOL.CHEM. V. 287 38876 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22995910 JRNL DOI 10.1074/JBC.M112.400150 REMARK 2 REMARK 2 RESOLUTION. 3.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 13347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 697 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 847 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2080 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 107.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 98.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90000 REMARK 3 B22 (A**2) : 0.90000 REMARK 3 B33 (A**2) : -1.35000 REMARK 3 B12 (A**2) : 0.45000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.383 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.283 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.209 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.446 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2146 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1416 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2931 ; 1.513 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3457 ; 0.938 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 7.322 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;37.900 ;24.479 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 319 ;18.994 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.775 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 327 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2463 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 430 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): -70.2903 16.4942 -10.2440 REMARK 3 T TENSOR REMARK 3 T11: 0.8380 T22: 0.3674 REMARK 3 T33: 0.4807 T12: 0.0639 REMARK 3 T13: -0.0516 T23: 0.1869 REMARK 3 L TENSOR REMARK 3 L11: 8.8857 L22: 4.4333 REMARK 3 L33: 4.4816 L12: 3.2724 REMARK 3 L13: -2.7261 L23: -1.8499 REMARK 3 S TENSOR REMARK 3 S11: 0.1879 S12: -1.5592 S13: -0.8956 REMARK 3 S21: 0.6333 S22: -0.1040 S23: -0.3555 REMARK 3 S31: -0.4893 S32: 0.4290 S33: -0.0839 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073552. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13347 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.120 REMARK 200 RESOLUTION RANGE LOW (A) : 40.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 15.50 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.20 REMARK 200 R MERGE FOR SHELL (I) : 0.78700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4FZM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% W/V PEG 8000, 30% V/V ETHYLENE REMARK 280 GLYCOL 0.03 M CACL2, 0.03 M MGCL2, 5% DIMETHYL SULFOXIDE, 0.1 M REMARK 280 BICINE/TRIS BASE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.37000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.37000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.37000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.37000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 50.37000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 50.37000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -50.37000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 HIS A 283 REMARK 465 HIS A 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 SER A 30 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 244 CE2 TRP A 244 CD2 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 3 111.04 55.10 REMARK 500 LEU A 5 136.67 76.93 REMARK 500 THR A 8 76.06 -115.29 REMARK 500 ILE A 10 90.14 82.33 REMARK 500 TYR A 13 75.76 -114.80 REMARK 500 ILE A 16 -84.41 62.17 REMARK 500 ALA A 18 140.05 -37.02 REMARK 500 ARG A 25 154.63 105.24 REMARK 500 LEU A 29 -149.75 -134.68 REMARK 500 SER A 31 30.21 -159.33 REMARK 500 GLN A 33 -168.37 -115.09 REMARK 500 SER A 34 -43.02 120.80 REMARK 500 PRO A 36 149.87 -39.41 REMARK 500 ASN A 159 79.89 -164.47 REMARK 500 ALA A 175 134.43 -36.25 REMARK 500 SER A 181 126.64 173.87 REMARK 500 ALA A 217 -63.96 62.32 REMARK 500 SER A 218 -78.32 -115.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XMX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BACTERIOCIN COLICIN M REMARK 900 RELATED ID: 4FZL RELATED DB: PDB REMARK 900 RELATED ID: 4FZM RELATED DB: PDB DBREF 4FZN A 2 276 UNP Q88A25 Q88A25_PSESM 2 276 SEQADV 4FZN ALA A 232 UNP Q88A25 ASP 232 ENGINEERED MUTATION SEQADV 4FZN LEU A 277 UNP Q88A25 EXPRESSION TAG SEQADV 4FZN GLU A 278 UNP Q88A25 EXPRESSION TAG SEQADV 4FZN HIS A 279 UNP Q88A25 EXPRESSION TAG SEQADV 4FZN HIS A 280 UNP Q88A25 EXPRESSION TAG SEQADV 4FZN HIS A 281 UNP Q88A25 EXPRESSION TAG SEQADV 4FZN HIS A 282 UNP Q88A25 EXPRESSION TAG SEQADV 4FZN HIS A 283 UNP Q88A25 EXPRESSION TAG SEQADV 4FZN HIS A 284 UNP Q88A25 EXPRESSION TAG SEQRES 1 A 283 PRO ILE GLU LEU PRO PRO THR TYR ILE THR PRO TYR PRO SEQRES 2 A 283 GLU ILE SER ALA GLY GLY ASN GLY THR TYR ARG GLY GLN SEQRES 3 A 283 ASP LEU SER SER GLY GLN SER PHE PRO ARG GLY MET GLN SEQRES 4 A 283 ASN PRO VAL ALA THR VAL LEU LEU LEU GLN GLY ASP LEU SEQRES 5 A 283 TYR CYS SER PRO ASN CYS LEU ALA THR PHE GLN ASP GLN SEQRES 6 A 283 ALA ARG ARG ASP SER PHE GLY ILE GLN SER LYS VAL ALA SEQRES 7 A 283 LEU LYS THR PHE ALA ALA ALA ASP GLN ARG GLU ALA GLU SEQRES 8 A 283 GLY ARG ASP LEU ARG THR ALA TYR ASN GLU ILE ALA THR SEQRES 9 A 283 ASP ILE GLY ARG SER GLN GLN ILE ASN GLU ASN ILE ILE SEQRES 10 A 283 LYS TYR PRO PRO GLY ASN HIS VAL LEU SER GLY GLY LEU SEQRES 11 A 283 MET THR PRO PHE HIS ALA LEU ALA HIS GLY MET PHE GLY SEQRES 12 A 283 LEU GLY ALA PRO LEU THR PHE PRO ILE GLN ASN VAL GLY SEQRES 13 A 283 LEU ASN VAL ASP ILE ARG GLY ILE PRO ASP VAL MET ASN SEQRES 14 A 283 VAL ILE GLN SER ALA ARG PRO VAL GLY THR SER SER LEU SEQRES 15 A 283 ASP VAL ASN PHE ALA TYR ASP VAL GLY LYS ASP SER ASN SEQRES 16 A 283 ALA SER TRP LEU THR LEU GLY ASN ILE THR LEU ARG LEU SEQRES 17 A 283 VAL GLY THR ILE ASP LYS ASN ALA SER GLY ALA TRP THR SEQRES 18 A 283 PHE SER GLY GLU ILE ARG ALA PHE ASN ALA VAL TYR ASP SEQRES 19 A 283 ALA ASN PRO SER ASN HIS ARG GLY TRP LEU GLY GLU ASN SEQRES 20 A 283 LEU THR SER LEU LEU SER ALA VAL PRO PHE THR SER TYR SEQRES 21 A 283 SER ILE GLU ILE PRO GLY SER LEU PRO VAL THR VAL SER SEQRES 22 A 283 GLY ASN LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *27(H2 O) HELIX 1 1 ASN A 41 CYS A 55 1 15 HELIX 2 2 ASN A 58 SER A 71 1 14 HELIX 3 3 GLY A 73 GLU A 92 1 20 HELIX 4 4 ASP A 95 ARG A 109 1 15 HELIX 5 5 MET A 132 GLY A 144 1 13 HELIX 6 6 PRO A 152 VAL A 156 5 5 HELIX 7 7 ASP A 161 GLY A 164 5 4 HELIX 8 8 ILE A 165 GLN A 173 1 9 HELIX 9 9 GLY A 192 ASP A 194 5 3 HELIX 10 10 SER A 195 GLY A 203 1 9 HELIX 11 11 ASN A 237 ASN A 240 5 4 HELIX 12 12 HIS A 241 LEU A 253 1 13 SHEET 1 A 3 LEU A 149 THR A 150 0 SHEET 2 A 3 TYR A 261 GLU A 264 1 O GLU A 264 N LEU A 149 SHEET 3 A 3 ALA A 232 TYR A 234 -1 N ALA A 232 O ILE A 263 SHEET 1 B 4 SER A 182 ASP A 190 0 SHEET 2 B 4 ASN A 204 THR A 212 -1 O LEU A 209 N VAL A 185 SHEET 3 B 4 ALA A 220 PHE A 230 -1 O PHE A 230 N THR A 206 SHEET 4 B 4 LYS A 215 ASN A 216 -1 N ASN A 216 O ALA A 220 SHEET 1 C 4 SER A 182 ASP A 190 0 SHEET 2 C 4 ASN A 204 THR A 212 -1 O LEU A 209 N VAL A 185 SHEET 3 C 4 ALA A 220 PHE A 230 -1 O PHE A 230 N THR A 206 SHEET 4 C 4 LEU A 269 GLY A 275 -1 O VAL A 271 N GLY A 225 CISPEP 1 SER A 30 SER A 31 0 -1.70 CISPEP 2 SER A 218 GLY A 219 0 -1.80 CRYST1 160.350 160.350 100.740 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006236 0.003601 0.000000 0.00000 SCALE2 0.000000 0.007201 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009927 0.00000