HEADER ISOMERASE/LYASE 08-JUL-12 4FZW TITLE CRYSTAL STRUCTURE OF THE PAAF-PAAG HYDRATASE-ISOMERASE COMPLEX FROM TITLE 2 E.COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2,3-DEHYDROADIPYL-COA HYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ENOYL-COA HYDRATASE; COMPND 5 EC: 4.2.1.17; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 1,2-EPOXYPHENYLACETYL-COA ISOMERASE; COMPND 9 CHAIN: C, D; COMPND 10 EC: 5.3.3.18; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B1393, JW1388, PAAF, YDBR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET15; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 83333; SOURCE 13 STRAIN: K12; SOURCE 14 GENE: PAAG, YDBT, B1394, JW1389; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PCDFDUET KEYWDS STRUCTURAL GENOMICS, MONTREAL-KINGSTON BACTERIAL STRUCTURAL GENOMICS KEYWDS 2 INITIATIVE, BSGI, CROTONASE FOLD, ENZYMES OF THE PHENYLACETATE KEYWDS 3 DEGRADATION PATHWAY, ISOMERASE-LYASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.M.GRISHIN,M.CYGLER,MONTREAL-KINGSTON BACTERIAL STRUCTURAL GENOMICS AUTHOR 2 INITIATIVE (BSGI) REVDAT 4 28-FEB-24 4FZW 1 REMARK SEQADV REVDAT 3 15-NOV-17 4FZW 1 REMARK REVDAT 2 16-JAN-13 4FZW 1 JRNL REVDAT 1 19-SEP-12 4FZW 0 JRNL AUTH A.M.GRISHIN,E.AJAMIAN,L.ZHANG,I.ROUILLER,M.BOSTINA,M.CYGLER JRNL TITL PROTEIN-PROTEIN INTERACTIONS IN THE BETA-OXIDATION PART OF JRNL TITL 2 THE PHENYLACETATE UTILIZATION PATHWAY. CRYSTAL STRUCTURE OF JRNL TITL 3 THE PAAF-PAAG HYDRATASE-ISOMERASE COMPLEX JRNL REF J.BIOL.CHEM. V. 287 37986 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22961985 JRNL DOI 10.1074/JBC.M112.388231 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 49484 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.282 REMARK 3 R VALUE (WORKING SET) : 0.280 REMARK 3 FREE R VALUE : 0.321 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.890 REMARK 3 FREE R VALUE TEST SET COUNT : 2589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8009 - 5.4795 0.99 5086 204 0.3517 0.3503 REMARK 3 2 5.4795 - 4.3502 1.00 5007 200 0.2642 0.3121 REMARK 3 3 4.3502 - 3.8006 1.00 4945 198 0.2533 0.3073 REMARK 3 4 3.8006 - 3.4532 0.99 4860 197 0.2534 0.3043 REMARK 3 5 3.4532 - 3.2058 0.99 4849 200 0.2531 0.3186 REMARK 3 6 3.2058 - 3.0168 0.97 4760 199 0.2645 0.3124 REMARK 3 7 3.0168 - 2.8657 0.95 4651 188 0.2799 0.2875 REMARK 3 8 2.8657 - 2.7410 0.94 4578 187 0.2683 0.3174 REMARK 3 9 2.7410 - 2.6355 0.92 4504 179 0.2777 0.3776 REMARK 3 10 2.6355 - 2.5446 0.89 4319 173 0.2888 0.3325 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 42.03 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.37950 REMARK 3 B22 (A**2) : 9.37950 REMARK 3 B33 (A**2) : -18.75900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7588 REMARK 3 ANGLE : 1.214 10286 REMARK 3 CHIRALITY : 0.074 1221 REMARK 3 PLANARITY : 0.005 1352 REMARK 3 DIHEDRAL : 14.692 2749 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000073561. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM), FEATURING REMARK 200 INDIRECTLY CRYO-COOLED FIRST REMARK 200 CRYSTAL AND SAGITTALLY FOCUSING REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51031 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.48500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 5.5, 0.2 M REMARK 280 SODIUM ACETATE, 5% (W/W) PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -65.98800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 114.29457 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -131.97600 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 429 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 ARG A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 MET B -2 REMARK 465 ARG B -1 REMARK 465 MET C -11 REMARK 465 GLY C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 MET C 2 REMARK 465 GLU C 3 REMARK 465 ASP C 68 REMARK 465 ARG C 69 REMARK 465 ASN C 70 REMARK 465 VAL C 71 REMARK 465 ASP C 72 REMARK 465 PRO C 73 REMARK 465 THR C 74 REMARK 465 GLY C 75 REMARK 465 PRO C 76 REMARK 465 LYS C 254 REMARK 465 MET D -11 REMARK 465 GLY D -10 REMARK 465 SER D -9 REMARK 465 SER D -8 REMARK 465 HIS D -7 REMARK 465 HIS D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 MET D 2 REMARK 465 GLU D 3 REMARK 465 ASP D 68 REMARK 465 ARG D 69 REMARK 465 ASN D 70 REMARK 465 VAL D 71 REMARK 465 ASP D 72 REMARK 465 PRO D 73 REMARK 465 THR D 74 REMARK 465 GLY D 75 REMARK 465 PRO D 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 78 CG OD1 ND2 REMARK 470 GLN A 189 CG CD OE1 NE2 REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 ARG A 255 CD NE CZ NH1 NH2 REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 78 CG OD1 ND2 REMARK 470 ASN B 122 CG OD1 ND2 REMARK 470 GLU B 161 CG CD OE1 OE2 REMARK 470 GLN B 170 CG CD OE1 NE2 REMARK 470 GLN B 189 CG CD OE1 NE2 REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 ARG B 255 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 40 CG CD CE NZ REMARK 470 ARG C 44 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 58 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 64 CG CD OE1 NE2 REMARK 470 ARG C 86 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 177 CD OE1 OE2 REMARK 470 ARG C 245 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 252 CG CD1 CD2 REMARK 470 PRO C 257 CG CD REMARK 470 GLN C 258 CG CD OE1 NE2 REMARK 470 LYS D 11 CG CD CE NZ REMARK 470 LYS D 40 CG CD CE NZ REMARK 470 ARG D 44 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 58 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 64 CG CD OE1 NE2 REMARK 470 LYS D 131 CE NZ REMARK 470 GLN D 195 CD OE1 NE2 REMARK 470 ARG D 245 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 21 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 3 -49.69 93.93 REMARK 500 GLN A 10 -130.39 51.27 REMARK 500 ALA A 61 59.87 -99.61 REMARK 500 GLU A 70 15.23 -67.48 REMARK 500 ILE A 134 -144.90 -115.45 REMARK 500 ALA A 138 35.88 -145.49 REMARK 500 GLN B 10 -121.85 58.91 REMARK 500 GLU B 70 6.84 -62.73 REMARK 500 ILE B 134 -150.74 -119.58 REMARK 500 ALA B 138 34.92 -140.38 REMARK 500 ALA B 195 -5.51 -52.21 REMARK 500 LEU C 24 35.69 74.70 REMARK 500 LEU C 66 51.67 -99.49 REMARK 500 PRO C 78 70.03 -68.64 REMARK 500 PHE C 87 -60.49 -107.67 REMARK 500 PRO C 99 45.19 -84.36 REMARK 500 MET C 134 68.08 -104.18 REMARK 500 PRO C 205 89.91 -64.25 REMARK 500 CYS D 61 116.24 -166.70 REMARK 500 LEU D 66 52.86 -97.04 REMARK 500 PRO D 99 40.08 -76.84 REMARK 500 ASP D 144 -159.14 -105.85 REMARK 500 ALA D 202 1.94 -69.75 REMARK 500 PRO D 205 89.22 -61.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 302 DBREF 4FZW A 1 255 UNP P76082 PAAF_ECOLI 1 255 DBREF 4FZW B 1 255 UNP P76082 PAAF_ECOLI 1 255 DBREF 4FZW C 1 262 UNP P77467 PAAG_ECOLI 1 262 DBREF 4FZW D 1 262 UNP P77467 PAAG_ECOLI 1 262 SEQADV 4FZW MET A -2 UNP P76082 INITIATING METHIONINE SEQADV 4FZW ARG A -1 UNP P76082 EXPRESSION TAG SEQADV 4FZW SER A 0 UNP P76082 EXPRESSION TAG SEQADV 4FZW MET B -2 UNP P76082 EXPRESSION TAG SEQADV 4FZW ARG B -1 UNP P76082 EXPRESSION TAG SEQADV 4FZW SER B 0 UNP P76082 EXPRESSION TAG SEQADV 4FZW MET C -11 UNP P77467 INITIATING METHIONINE SEQADV 4FZW GLY C -10 UNP P77467 EXPRESSION TAG SEQADV 4FZW SER C -9 UNP P77467 EXPRESSION TAG SEQADV 4FZW SER C -8 UNP P77467 EXPRESSION TAG SEQADV 4FZW HIS C -7 UNP P77467 EXPRESSION TAG SEQADV 4FZW HIS C -6 UNP P77467 EXPRESSION TAG SEQADV 4FZW HIS C -5 UNP P77467 EXPRESSION TAG SEQADV 4FZW HIS C -4 UNP P77467 EXPRESSION TAG SEQADV 4FZW HIS C -3 UNP P77467 EXPRESSION TAG SEQADV 4FZW HIS C -2 UNP P77467 EXPRESSION TAG SEQADV 4FZW GLY C -1 UNP P77467 EXPRESSION TAG SEQADV 4FZW SER C 0 UNP P77467 EXPRESSION TAG SEQADV 4FZW MET D -11 UNP P77467 INITIATING METHIONINE SEQADV 4FZW GLY D -10 UNP P77467 EXPRESSION TAG SEQADV 4FZW SER D -9 UNP P77467 EXPRESSION TAG SEQADV 4FZW SER D -8 UNP P77467 EXPRESSION TAG SEQADV 4FZW HIS D -7 UNP P77467 EXPRESSION TAG SEQADV 4FZW HIS D -6 UNP P77467 EXPRESSION TAG SEQADV 4FZW HIS D -5 UNP P77467 EXPRESSION TAG SEQADV 4FZW HIS D -4 UNP P77467 EXPRESSION TAG SEQADV 4FZW HIS D -3 UNP P77467 EXPRESSION TAG SEQADV 4FZW HIS D -2 UNP P77467 EXPRESSION TAG SEQADV 4FZW GLY D -1 UNP P77467 EXPRESSION TAG SEQADV 4FZW SER D 0 UNP P77467 EXPRESSION TAG SEQRES 1 A 258 MET ARG SER MET SER GLU LEU ILE VAL SER ARG GLN GLN SEQRES 2 A 258 ARG VAL LEU LEU LEU THR LEU ASN ARG PRO ALA ALA ARG SEQRES 3 A 258 ASN ALA LEU ASN ASN ALA LEU LEU MET GLN LEU VAL ASN SEQRES 4 A 258 GLU LEU GLU ALA ALA ALA THR ASP THR SER ILE SER VAL SEQRES 5 A 258 CYS VAL ILE THR GLY ASN ALA ARG PHE PHE ALA ALA GLY SEQRES 6 A 258 ALA ASP LEU ASN GLU MET ALA GLU LYS ASP LEU ALA ALA SEQRES 7 A 258 THR LEU ASN ASP THR ARG PRO GLN LEU TRP ALA ARG LEU SEQRES 8 A 258 GLN ALA PHE ASN LYS PRO LEU ILE ALA ALA VAL ASN GLY SEQRES 9 A 258 TYR ALA LEU GLY ALA GLY CYS GLU LEU ALA LEU LEU CYS SEQRES 10 A 258 ASP VAL VAL VAL ALA GLY GLU ASN ALA ARG PHE GLY LEU SEQRES 11 A 258 PRO GLU ILE THR LEU GLY ILE MET PRO GLY ALA GLY GLY SEQRES 12 A 258 THR GLN ARG LEU ILE ARG SER VAL GLY LYS SER LEU ALA SEQRES 13 A 258 SER LYS MET VAL LEU SER GLY GLU SER ILE THR ALA GLN SEQRES 14 A 258 GLN ALA GLN GLN ALA GLY LEU VAL SER ASP VAL PHE PRO SEQRES 15 A 258 SER ASP LEU THR LEU GLU TYR ALA LEU GLN LEU ALA SER SEQRES 16 A 258 LYS MET ALA ARG HIS SER PRO LEU ALA LEU GLN ALA ALA SEQRES 17 A 258 LYS GLN ALA LEU ARG GLN SER GLN GLU VAL ALA LEU GLN SEQRES 18 A 258 ALA GLY LEU ALA GLN GLU ARG GLN LEU PHE THR LEU LEU SEQRES 19 A 258 ALA ALA THR GLU ASP ARG HIS GLU GLY ILE SER ALA PHE SEQRES 20 A 258 LEU GLN LYS ARG THR PRO ASP PHE LYS GLY ARG SEQRES 1 B 258 MET ARG SER MET SER GLU LEU ILE VAL SER ARG GLN GLN SEQRES 2 B 258 ARG VAL LEU LEU LEU THR LEU ASN ARG PRO ALA ALA ARG SEQRES 3 B 258 ASN ALA LEU ASN ASN ALA LEU LEU MET GLN LEU VAL ASN SEQRES 4 B 258 GLU LEU GLU ALA ALA ALA THR ASP THR SER ILE SER VAL SEQRES 5 B 258 CYS VAL ILE THR GLY ASN ALA ARG PHE PHE ALA ALA GLY SEQRES 6 B 258 ALA ASP LEU ASN GLU MET ALA GLU LYS ASP LEU ALA ALA SEQRES 7 B 258 THR LEU ASN ASP THR ARG PRO GLN LEU TRP ALA ARG LEU SEQRES 8 B 258 GLN ALA PHE ASN LYS PRO LEU ILE ALA ALA VAL ASN GLY SEQRES 9 B 258 TYR ALA LEU GLY ALA GLY CYS GLU LEU ALA LEU LEU CYS SEQRES 10 B 258 ASP VAL VAL VAL ALA GLY GLU ASN ALA ARG PHE GLY LEU SEQRES 11 B 258 PRO GLU ILE THR LEU GLY ILE MET PRO GLY ALA GLY GLY SEQRES 12 B 258 THR GLN ARG LEU ILE ARG SER VAL GLY LYS SER LEU ALA SEQRES 13 B 258 SER LYS MET VAL LEU SER GLY GLU SER ILE THR ALA GLN SEQRES 14 B 258 GLN ALA GLN GLN ALA GLY LEU VAL SER ASP VAL PHE PRO SEQRES 15 B 258 SER ASP LEU THR LEU GLU TYR ALA LEU GLN LEU ALA SER SEQRES 16 B 258 LYS MET ALA ARG HIS SER PRO LEU ALA LEU GLN ALA ALA SEQRES 17 B 258 LYS GLN ALA LEU ARG GLN SER GLN GLU VAL ALA LEU GLN SEQRES 18 B 258 ALA GLY LEU ALA GLN GLU ARG GLN LEU PHE THR LEU LEU SEQRES 19 B 258 ALA ALA THR GLU ASP ARG HIS GLU GLY ILE SER ALA PHE SEQRES 20 B 258 LEU GLN LYS ARG THR PRO ASP PHE LYS GLY ARG SEQRES 1 C 274 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 274 MET GLU PHE ILE LEU SER HIS VAL GLU LYS GLY VAL MET SEQRES 3 C 274 THR LEU THR LEU ASN ARG PRO GLU ARG LEU ASN SER PHE SEQRES 4 C 274 ASN ASP GLU MET HIS ALA GLN LEU ALA GLU CYS LEU LYS SEQRES 5 C 274 GLN VAL GLU ARG ASP ASP THR ILE ARG CYS LEU LEU LEU SEQRES 6 C 274 THR GLY ALA GLY ARG GLY PHE CYS ALA GLY GLN ASP LEU SEQRES 7 C 274 ASN ASP ARG ASN VAL ASP PRO THR GLY PRO ALA PRO ASP SEQRES 8 C 274 LEU GLY MET SER VAL GLU ARG PHE TYR ASN PRO LEU VAL SEQRES 9 C 274 ARG ARG LEU ALA LYS LEU PRO LYS PRO VAL ILE CYS ALA SEQRES 10 C 274 VAL ASN GLY VAL ALA ALA GLY ALA GLY ALA THR LEU ALA SEQRES 11 C 274 LEU GLY GLY ASP ILE VAL ILE ALA ALA ARG SER ALA LYS SEQRES 12 C 274 PHE VAL MET ALA PHE SER LYS LEU GLY LEU ILE PRO ASP SEQRES 13 C 274 CYS GLY GLY THR TRP LEU LEU PRO ARG VAL ALA GLY ARG SEQRES 14 C 274 ALA ARG ALA MET GLY LEU ALA LEU LEU GLY ASN GLN LEU SEQRES 15 C 274 SER ALA GLU GLN ALA HIS GLU TRP GLY MET ILE TRP GLN SEQRES 16 C 274 VAL VAL ASP ASP GLU THR LEU ALA ASP THR ALA GLN GLN SEQRES 17 C 274 LEU ALA ARG HIS LEU ALA THR GLN PRO THR PHE GLY LEU SEQRES 18 C 274 GLY LEU ILE LYS GLN ALA ILE ASN SER ALA GLU THR ASN SEQRES 19 C 274 THR LEU ASP THR GLN LEU ASP LEU GLU ARG ASP TYR GLN SEQRES 20 C 274 ARG LEU ALA GLY ARG SER ALA ASP TYR ARG GLU GLY VAL SEQRES 21 C 274 SER ALA PHE LEU ALA LYS ARG SER PRO GLN PHE THR GLY SEQRES 22 C 274 LYS SEQRES 1 D 274 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 D 274 MET GLU PHE ILE LEU SER HIS VAL GLU LYS GLY VAL MET SEQRES 3 D 274 THR LEU THR LEU ASN ARG PRO GLU ARG LEU ASN SER PHE SEQRES 4 D 274 ASN ASP GLU MET HIS ALA GLN LEU ALA GLU CYS LEU LYS SEQRES 5 D 274 GLN VAL GLU ARG ASP ASP THR ILE ARG CYS LEU LEU LEU SEQRES 6 D 274 THR GLY ALA GLY ARG GLY PHE CYS ALA GLY GLN ASP LEU SEQRES 7 D 274 ASN ASP ARG ASN VAL ASP PRO THR GLY PRO ALA PRO ASP SEQRES 8 D 274 LEU GLY MET SER VAL GLU ARG PHE TYR ASN PRO LEU VAL SEQRES 9 D 274 ARG ARG LEU ALA LYS LEU PRO LYS PRO VAL ILE CYS ALA SEQRES 10 D 274 VAL ASN GLY VAL ALA ALA GLY ALA GLY ALA THR LEU ALA SEQRES 11 D 274 LEU GLY GLY ASP ILE VAL ILE ALA ALA ARG SER ALA LYS SEQRES 12 D 274 PHE VAL MET ALA PHE SER LYS LEU GLY LEU ILE PRO ASP SEQRES 13 D 274 CYS GLY GLY THR TRP LEU LEU PRO ARG VAL ALA GLY ARG SEQRES 14 D 274 ALA ARG ALA MET GLY LEU ALA LEU LEU GLY ASN GLN LEU SEQRES 15 D 274 SER ALA GLU GLN ALA HIS GLU TRP GLY MET ILE TRP GLN SEQRES 16 D 274 VAL VAL ASP ASP GLU THR LEU ALA ASP THR ALA GLN GLN SEQRES 17 D 274 LEU ALA ARG HIS LEU ALA THR GLN PRO THR PHE GLY LEU SEQRES 18 D 274 GLY LEU ILE LYS GLN ALA ILE ASN SER ALA GLU THR ASN SEQRES 19 D 274 THR LEU ASP THR GLN LEU ASP LEU GLU ARG ASP TYR GLN SEQRES 20 D 274 ARG LEU ALA GLY ARG SER ALA ASP TYR ARG GLU GLY VAL SEQRES 21 D 274 SER ALA PHE LEU ALA LYS ARG SER PRO GLN PHE THR GLY SEQRES 22 D 274 LYS HET GOL A 301 6 HET GOL B 301 6 HET GOL B 302 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 HOH *121(H2 O) HELIX 1 1 ARG A 19 ARG A 23 5 5 HELIX 2 2 ASN A 27 THR A 43 1 17 HELIX 3 3 ASP A 64 GLU A 70 1 7 HELIX 4 4 ASP A 72 ASN A 78 1 7 HELIX 5 5 THR A 80 ALA A 90 1 11 HELIX 6 6 GLY A 105 CYS A 114 1 10 HELIX 7 7 PRO A 128 GLY A 133 5 6 HELIX 8 8 GLY A 139 GLY A 149 1 11 HELIX 9 9 GLY A 149 GLY A 160 1 12 HELIX 10 10 ALA A 165 GLY A 172 1 8 HELIX 11 11 LEU A 182 ALA A 195 1 14 HELIX 12 12 SER A 198 GLN A 213 1 16 HELIX 13 13 ALA A 216 ALA A 233 1 18 HELIX 14 14 THR A 234 GLN A 246 1 13 HELIX 15 15 ARG B 19 ARG B 23 5 5 HELIX 16 16 ASN B 27 ASP B 44 1 18 HELIX 17 17 ASP B 64 GLU B 70 1 7 HELIX 18 18 ASP B 72 ASN B 78 1 7 HELIX 19 19 THR B 80 ALA B 90 1 11 HELIX 20 20 GLY B 105 CYS B 114 1 10 HELIX 21 21 LEU B 127 GLY B 133 5 7 HELIX 22 22 GLN B 142 GLY B 160 1 19 HELIX 23 23 ALA B 165 ALA B 171 1 7 HELIX 24 24 LEU B 182 ALA B 195 1 14 HELIX 25 25 SER B 198 SER B 212 1 15 HELIX 26 26 ALA B 216 ALA B 233 1 18 HELIX 27 27 GLU B 235 GLN B 246 1 12 HELIX 28 28 ASN C 28 ASP C 45 1 18 HELIX 29 29 ASP C 79 PHE C 87 1 9 HELIX 30 30 PHE C 87 LEU C 98 1 12 HELIX 31 31 GLY C 112 GLY C 120 1 9 HELIX 32 32 ALA C 135 LEU C 139 5 5 HELIX 33 33 GLY C 146 ALA C 155 1 10 HELIX 34 34 GLY C 156 GLY C 167 1 12 HELIX 35 35 ALA C 172 TRP C 178 1 7 HELIX 36 36 ASP C 186 GLU C 188 5 3 HELIX 37 37 THR C 189 ALA C 202 1 14 HELIX 38 38 PRO C 205 GLU C 220 1 16 HELIX 39 39 THR C 223 GLY C 239 1 17 HELIX 40 40 SER C 241 ALA C 253 1 13 HELIX 41 41 ASN D 28 ASP D 45 1 18 HELIX 42 42 ASP D 79 PHE D 87 1 9 HELIX 43 43 PHE D 87 LEU D 98 1 12 HELIX 44 44 GLY D 112 GLY D 120 1 9 HELIX 45 45 ALA D 135 GLY D 140 5 6 HELIX 46 46 GLY D 146 ALA D 155 1 10 HELIX 47 47 GLY D 156 GLY D 167 1 12 HELIX 48 48 ALA D 172 GLY D 179 1 8 HELIX 49 49 ASP D 186 GLU D 188 5 3 HELIX 50 50 THR D 189 ALA D 202 1 14 HELIX 51 51 PRO D 205 GLU D 220 1 16 HELIX 52 52 THR D 223 GLY D 239 1 17 HELIX 53 53 SER D 241 ALA D 253 1 13 SHEET 1 A 6 GLU A 3 GLN A 9 0 SHEET 2 A 6 VAL A 12 ASN A 18 -1 O LEU A 14 N SER A 7 SHEET 3 A 6 VAL A 49 THR A 53 1 O VAL A 51 N LEU A 15 SHEET 4 A 6 LEU A 95 VAL A 99 1 O ALA A 98 N ILE A 52 SHEET 5 A 6 VAL A 116 GLY A 120 1 O VAL A 116 N ALA A 97 SHEET 6 A 6 ASP A 176 PHE A 178 1 O PHE A 178 N ALA A 119 SHEET 1 B 4 PHE A 58 ALA A 61 0 SHEET 2 B 4 TYR A 102 LEU A 104 1 O TYR A 102 N PHE A 59 SHEET 3 B 4 ARG A 124 GLY A 126 1 O ARG A 124 N ALA A 103 SHEET 4 B 4 ILE A 163 THR A 164 -1 O ILE A 163 N PHE A 125 SHEET 1 C 6 LEU B 4 GLN B 9 0 SHEET 2 C 6 VAL B 12 LEU B 17 -1 O LEU B 14 N SER B 7 SHEET 3 C 6 VAL B 49 THR B 53 1 O THR B 53 N LEU B 17 SHEET 4 C 6 LEU B 95 VAL B 99 1 O ILE B 96 N ILE B 52 SHEET 5 C 6 VAL B 116 GLY B 120 1 O VAL B 116 N ALA B 97 SHEET 6 C 6 VAL B 177 PHE B 178 1 O PHE B 178 N ALA B 119 SHEET 1 D 4 PHE B 58 ALA B 61 0 SHEET 2 D 4 TYR B 102 LEU B 104 1 O TYR B 102 N PHE B 59 SHEET 3 D 4 ARG B 124 GLY B 126 1 O ARG B 124 N ALA B 103 SHEET 4 D 4 ILE B 163 THR B 164 -1 O ILE B 163 N PHE B 125 SHEET 1 E 6 ILE C 5 GLU C 10 0 SHEET 2 E 6 VAL C 13 LEU C 18 -1 O VAL C 13 N GLU C 10 SHEET 3 E 6 CYS C 50 GLY C 55 1 O LEU C 52 N MET C 14 SHEET 4 E 6 VAL C 102 VAL C 106 1 O ILE C 103 N LEU C 51 SHEET 5 E 6 ILE C 123 ALA C 127 1 O ALA C 127 N VAL C 106 SHEET 6 E 6 GLN C 183 VAL C 185 1 O GLN C 183 N ALA C 126 SHEET 1 F 3 ALA C 110 ALA C 111 0 SHEET 2 F 3 LYS C 131 VAL C 133 1 O VAL C 133 N ALA C 110 SHEET 3 F 3 LEU C 170 SER C 171 -1 O LEU C 170 N PHE C 132 SHEET 1 G 6 ILE D 5 GLU D 10 0 SHEET 2 G 6 VAL D 13 LEU D 18 -1 O THR D 17 N LEU D 6 SHEET 3 G 6 CYS D 50 GLY D 55 1 O LEU D 52 N LEU D 16 SHEET 4 G 6 VAL D 102 VAL D 106 1 O ALA D 105 N LEU D 53 SHEET 5 G 6 ILE D 123 ALA D 127 1 O ALA D 127 N VAL D 106 SHEET 6 G 6 GLN D 183 VAL D 185 1 O GLN D 183 N ALA D 126 SHEET 1 H 3 ALA D 110 ALA D 111 0 SHEET 2 H 3 LYS D 131 VAL D 133 1 O LYS D 131 N ALA D 110 SHEET 3 H 3 LEU D 170 SER D 171 -1 O LEU D 170 N PHE D 132 SITE 1 AC1 4 MET A 68 ARG A 81 GLU A 109 GLU A 129 SITE 1 AC2 2 ARG B 23 PHE B 58 SITE 1 AC3 5 ARG B 81 TRP B 85 GLU B 109 GLU B 129 SITE 2 AC3 5 GLY B 137 CRYST1 131.976 131.976 153.865 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007577 0.004375 0.000000 0.00000 SCALE2 0.000000 0.008749 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006499 0.00000