HEADER HYDROLASE/DNA 08-JUL-12 4FZY TITLE EXONUCLEASE X IN COMPLEX WITH 12BP BLUNT-ENDED DSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*GP*TP*AP*GP*AP*TP*TP*CP*GP*AP*G)-3'); COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: EXODEOXYRIBONUCLEASE 10; COMPND 7 CHAIN: A, B; COMPND 8 FRAGMENT: UNP RESIDUES 1-167; COMPND 9 SYNONYM: EXODEOXYRIBONUCLEASE X, EXO X, EXONUCLEASE X; COMPND 10 EC: 3.1.11.-; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(P*CP*TP*CP*GP*AP*AP*TP*CP*TP*AP*CP*A)-3'); COMPND 14 CHAIN: D; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 5 ORGANISM_TAXID: 83333; SOURCE 6 STRAIN: K12; SOURCE 7 GENE: EXOX; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES KEYWDS EXO, DNAQ FAMILY, DEDDH, EXONUCLEASE, NUCLEASE, MISMATCH REPAIR, UV KEYWDS 2 REPAIR, HOMOLOGOUS RECOMBINATION, STABILIZATION OF TANDEM REPEAT, KEYWDS 3 HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.WANG,H.SUN,F.CHENG,L.BI,T.JIANG REVDAT 3 08-NOV-23 4FZY 1 REMARK SEQADV LINK REVDAT 2 09-OCT-13 4FZY 1 JRNL REVDAT 1 03-JUL-13 4FZY 0 JRNL AUTH T.WANG,H.L.SUN,F.CHENG,X.E.ZHANG,L.BI,T.JIANG JRNL TITL RECOGNITION AND PROCESSING OF DOUBLE-STRANDED DNA BY EXOX, A JRNL TITL 2 DISTRIBUTIVE 3'-5' EXONUCLEASE JRNL REF NUCLEIC ACIDS RES. V. 41 7556 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23771145 JRNL DOI 10.1093/NAR/GKT495 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 14545 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 768 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1009 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2647 REMARK 3 NUCLEIC ACID ATOMS : 472 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.66000 REMARK 3 B22 (A**2) : -2.46000 REMARK 3 B33 (A**2) : 4.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.710 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.287 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3245 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4510 ; 0.842 ; 2.137 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 331 ; 7.094 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;34.951 ;22.870 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 459 ;21.438 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;23.103 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 503 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2285 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1665 ; 1.202 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2710 ; 2.228 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1580 ; 3.381 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1800 ; 5.186 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 4 REMARK 4 4FZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073563. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15314 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4FZX REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 17% PEG6000, PH 6.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.64100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.33400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.44350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.33400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.64100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.44350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DT C 1 REMARK 465 LEU A 168 REMARK 465 GLU A 169 REMARK 465 HIS A 170 REMARK 465 HIS A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 ARG B 167 REMARK 465 LEU B 168 REMARK 465 GLU B 169 REMARK 465 HIS B 170 REMARK 465 HIS B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 131 -159.63 -116.87 REMARK 500 HIS A 134 36.41 72.20 REMARK 500 ARG A 135 76.56 -117.65 REMARK 500 ALA A 136 -75.96 21.95 REMARK 500 PRO B 90 -179.59 -66.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA C 11 O3' REMARK 620 2 DG C 12 OP1 56.6 REMARK 620 3 HOH C 202 O 79.5 74.6 REMARK 620 4 ASP A 6 OD1 156.3 99.7 94.6 REMARK 620 5 HOH A 303 O 91.1 110.6 164.4 98.8 REMARK 620 6 HOH A 304 O 101.0 145.9 76.2 99.9 93.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 12 OP1 REMARK 620 2 ASP A 6 OD2 115.7 REMARK 620 3 GLU A 8 OE2 125.0 80.1 REMARK 620 4 ASP A 139 OD2 122.9 96.7 105.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC D 11 O3' REMARK 620 2 DA D 12 OP1 54.9 REMARK 620 3 HOH D 202 O 84.9 79.5 REMARK 620 4 ASP B 6 OD1 161.6 106.8 94.1 REMARK 620 5 HOH B 306 O 96.6 113.4 165.2 89.0 REMARK 620 6 HOH B 307 O 104.1 148.1 74.5 93.3 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA D 12 OP1 REMARK 620 2 ASP B 6 OD2 115.5 REMARK 620 3 GLU B 8 OE2 130.5 78.3 REMARK 620 4 ASP B 139 OD2 119.2 99.9 103.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FZX RELATED DB: PDB REMARK 900 RELATED ID: 4FZZ RELATED DB: PDB DBREF 4FZY A 1 167 UNP P0AEK0 EXOX_ECOLI 1 167 DBREF 4FZY B 1 167 UNP P0AEK0 EXOX_ECOLI 1 167 DBREF 4FZY C 1 12 PDB 4FZY 4FZY 1 12 DBREF 4FZY D 1 12 PDB 4FZY 4FZY 1 12 SEQADV 4FZY LEU A 168 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZY GLU A 169 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZY HIS A 170 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZY HIS A 171 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZY HIS A 172 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZY HIS A 173 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZY HIS A 174 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZY HIS A 175 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZY LEU B 168 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZY GLU B 169 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZY HIS B 170 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZY HIS B 171 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZY HIS B 172 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZY HIS B 173 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZY HIS B 174 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZY HIS B 175 UNP P0AEK0 EXPRESSION TAG SEQRES 1 C 12 DT DG DT DA DG DA DT DT DC DG DA DG SEQRES 1 A 175 MET LEU ARG ILE ILE ASP THR GLU THR CYS GLY LEU GLN SEQRES 2 A 175 GLY GLY ILE VAL GLU ILE ALA SER VAL ASP VAL ILE ASP SEQRES 3 A 175 GLY LYS ILE VAL ASN PRO MET SER HIS LEU VAL ARG PRO SEQRES 4 A 175 ASP ARG PRO ILE SER PRO GLN ALA MET ALA ILE HIS ARG SEQRES 5 A 175 ILE THR GLU ALA MET VAL ALA ASP LYS PRO TRP ILE GLU SEQRES 6 A 175 ASP VAL ILE PRO HIS TYR TYR GLY SER GLU TRP TYR VAL SEQRES 7 A 175 ALA HIS ASN ALA SER PHE ASP ARG ARG VAL LEU PRO GLU SEQRES 8 A 175 MET PRO GLY GLU TRP ILE CYS THR MET LYS LEU ALA ARG SEQRES 9 A 175 ARG LEU TRP PRO GLY ILE LYS TYR SER ASN MET ALA LEU SEQRES 10 A 175 TYR LYS THR ARG LYS LEU ASN VAL GLN THR PRO PRO GLY SEQRES 11 A 175 LEU HIS HIS HIS ARG ALA LEU TYR ASP CYS TYR ILE THR SEQRES 12 A 175 ALA ALA LEU LEU ILE ASP ILE MET ASN THR SER GLY TRP SEQRES 13 A 175 THR ALA GLU GLN MET ALA ASP ILE THR GLY ARG LEU GLU SEQRES 14 A 175 HIS HIS HIS HIS HIS HIS SEQRES 1 D 12 DC DT DC DG DA DA DT DC DT DA DC DA SEQRES 1 B 175 MET LEU ARG ILE ILE ASP THR GLU THR CYS GLY LEU GLN SEQRES 2 B 175 GLY GLY ILE VAL GLU ILE ALA SER VAL ASP VAL ILE ASP SEQRES 3 B 175 GLY LYS ILE VAL ASN PRO MET SER HIS LEU VAL ARG PRO SEQRES 4 B 175 ASP ARG PRO ILE SER PRO GLN ALA MET ALA ILE HIS ARG SEQRES 5 B 175 ILE THR GLU ALA MET VAL ALA ASP LYS PRO TRP ILE GLU SEQRES 6 B 175 ASP VAL ILE PRO HIS TYR TYR GLY SER GLU TRP TYR VAL SEQRES 7 B 175 ALA HIS ASN ALA SER PHE ASP ARG ARG VAL LEU PRO GLU SEQRES 8 B 175 MET PRO GLY GLU TRP ILE CYS THR MET LYS LEU ALA ARG SEQRES 9 B 175 ARG LEU TRP PRO GLY ILE LYS TYR SER ASN MET ALA LEU SEQRES 10 B 175 TYR LYS THR ARG LYS LEU ASN VAL GLN THR PRO PRO GLY SEQRES 11 B 175 LEU HIS HIS HIS ARG ALA LEU TYR ASP CYS TYR ILE THR SEQRES 12 B 175 ALA ALA LEU LEU ILE ASP ILE MET ASN THR SER GLY TRP SEQRES 13 B 175 THR ALA GLU GLN MET ALA ASP ILE THR GLY ARG LEU GLU SEQRES 14 B 175 HIS HIS HIS HIS HIS HIS HET NA C 101 1 HET NA A 201 1 HET NA D 101 1 HET NA B 201 1 HETNAM NA SODIUM ION FORMUL 5 NA 4(NA 1+) FORMUL 9 HOH *22(H2 O) HELIX 1 1 SER A 44 ARG A 52 1 9 HELIX 2 2 THR A 54 VAL A 58 5 5 HELIX 3 3 TRP A 63 TYR A 71 5 9 HELIX 4 4 ALA A 82 LEU A 89 1 8 HELIX 5 5 THR A 99 TRP A 107 1 9 HELIX 6 6 SER A 113 ARG A 121 1 9 HELIX 7 7 ALA A 136 GLY A 155 1 20 HELIX 8 8 THR A 157 GLY A 166 1 10 HELIX 9 9 SER B 44 ARG B 52 1 9 HELIX 10 10 THR B 54 ALA B 59 1 6 HELIX 11 11 TRP B 63 ILE B 68 1 6 HELIX 12 12 PRO B 69 TYR B 72 5 4 HELIX 13 13 ALA B 82 LEU B 89 1 8 HELIX 14 14 THR B 99 TRP B 107 1 9 HELIX 15 15 SER B 113 ARG B 121 1 9 HELIX 16 16 ARG B 135 GLY B 155 1 21 HELIX 17 17 THR B 157 GLY B 166 1 10 SHEET 1 A 5 LYS A 28 LEU A 36 0 SHEET 2 A 5 ILE A 16 ILE A 25 -1 N ASP A 23 O VAL A 30 SHEET 3 A 5 LEU A 2 THR A 9 -1 N LEU A 2 O VAL A 24 SHEET 4 A 5 TRP A 76 ALA A 79 1 O VAL A 78 N ILE A 5 SHEET 5 A 5 GLU A 95 CYS A 98 1 O GLU A 95 N TYR A 77 SHEET 1 B 5 LYS B 28 LEU B 36 0 SHEET 2 B 5 GLU B 18 ILE B 25 -1 N ASP B 23 O VAL B 30 SHEET 3 B 5 LEU B 2 GLU B 8 -1 N LEU B 2 O VAL B 24 SHEET 4 B 5 TRP B 76 ALA B 79 1 O VAL B 78 N ILE B 5 SHEET 5 B 5 GLU B 95 CYS B 98 1 O GLU B 95 N TYR B 77 LINK O3' DA C 11 NA NA C 101 1555 1555 2.77 LINK OP1 DG C 12 NA NA C 101 1555 1555 2.43 LINK OP1 DG C 12 NA NA A 201 1555 1555 2.22 LINK NA NA C 101 O HOH C 202 1555 1555 2.22 LINK NA NA C 101 OD1 ASP A 6 1555 1555 2.22 LINK NA NA C 101 O HOH A 303 1555 1555 2.23 LINK NA NA C 101 O HOH A 304 1555 1555 2.38 LINK OD2 ASP A 6 NA NA A 201 1555 1555 2.61 LINK OE2 GLU A 8 NA NA A 201 1555 1555 2.64 LINK OD2 ASP A 139 NA NA A 201 1555 1555 2.11 LINK O3' DC D 11 NA NA D 101 1555 1555 2.76 LINK OP1 DA D 12 NA NA D 101 1555 1555 2.62 LINK OP1 DA D 12 NA NA B 201 1555 1555 2.28 LINK NA NA D 101 O HOH D 202 1555 1555 2.13 LINK NA NA D 101 OD1 ASP B 6 1555 1555 2.18 LINK NA NA D 101 O HOH B 306 1555 1555 2.20 LINK NA NA D 101 O HOH B 307 1555 1555 2.35 LINK OD2 ASP B 6 NA NA B 201 1555 1555 2.77 LINK OE2 GLU B 8 NA NA B 201 1555 1555 2.74 LINK OD2 ASP B 139 NA NA B 201 1555 1555 2.29 SITE 1 AC1 7 ASP A 6 NA A 201 HOH A 303 HOH A 304 SITE 2 AC1 7 DA C 11 DG C 12 HOH C 202 SITE 1 AC2 5 ASP A 6 GLU A 8 ASP A 139 DG C 12 SITE 2 AC2 5 NA C 101 SITE 1 AC3 6 ASP B 6 HOH B 306 HOH B 307 DC D 11 SITE 2 AC3 6 DA D 12 HOH D 202 SITE 1 AC4 4 ASP B 6 GLU B 8 ASP B 139 DA D 12 CRYST1 37.282 78.887 146.668 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026823 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006818 0.00000