HEADER OXIDOREDUCTASE 09-JUL-12 4G0K TITLE GLUTATHIONYL-HYDROQUINONE REDUCTASE, YQJG, OF E.COLI COMPLEXED WITH TITLE 2 GS-MENADIONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YQJG; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B3102, JW3073, YQJG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 30 KEYWDS GLUTATHIONYL-HYDROQUINONE REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.R.GREEN,R.P.HAYES,L.XUN,C.KANG REVDAT 3 28-FEB-24 4G0K 1 REMARK REVDAT 2 13-FEB-13 4G0K 1 JRNL REVDAT 1 12-SEP-12 4G0K 0 JRNL AUTH A.R.GREEN,R.P.HAYES,L.XUN,C.KANG JRNL TITL STRUCTURAL UNDERSTANDING OF THE GLUTATHIONE-DEPENDENT JRNL TITL 2 REDUCTION MECHANISM OF GLUTATHIONYL-HYDROQUINONE REDUCTASES. JRNL REF J.BIOL.CHEM. V. 287 35838 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22955277 JRNL DOI 10.1074/JBC.M112.395541 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 39684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 1879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6783 - 6.0085 0.99 3335 162 0.1835 0.2048 REMARK 3 2 6.0085 - 4.7704 0.99 3201 158 0.1658 0.2093 REMARK 3 3 4.7704 - 4.1678 1.00 3207 161 0.1404 0.2090 REMARK 3 4 4.1678 - 3.7869 0.99 3130 150 0.1477 0.1804 REMARK 3 5 3.7869 - 3.5155 0.98 3162 160 0.1693 0.2254 REMARK 3 6 3.5155 - 3.3083 0.98 3070 154 0.1993 0.2387 REMARK 3 7 3.3083 - 3.1427 0.96 3059 151 0.2180 0.2893 REMARK 3 8 3.1427 - 3.0059 0.95 3014 149 0.2244 0.2778 REMARK 3 9 3.0059 - 2.8902 0.92 2895 142 0.2310 0.2827 REMARK 3 10 2.8902 - 2.7905 0.89 2814 137 0.2287 0.2607 REMARK 3 11 2.7905 - 2.7032 0.84 2640 127 0.2476 0.2894 REMARK 3 12 2.7032 - 2.6259 0.77 2397 124 0.2699 0.3653 REMARK 3 13 2.6259 - 2.5568 0.60 1881 104 0.3191 0.3743 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 46.93 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.10760 REMARK 3 B22 (A**2) : 2.10760 REMARK 3 B33 (A**2) : -4.21530 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.027 5626 REMARK 3 ANGLE : 2.420 7672 REMARK 3 CHIRALITY : 0.150 784 REMARK 3 PLANARITY : 0.018 970 REMARK 3 DIHEDRAL : 18.079 2008 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39684 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 48.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 59.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 53.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES MONOHYDRATE, 1.6M AMMONIUM REMARK 280 SULFATE,10% 1,4-DIOXANE , PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.05700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.11400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.11400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.05700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -175.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 27 N ALA A 29 1.89 REMARK 500 O HOH B 555 O HOH B 556 1.90 REMARK 500 OD1 ASP A 318 O HOH A 544 1.95 REMARK 500 O GLU A 51 O HOH A 548 2.02 REMARK 500 CG2 THR B 255 O HOH B 511 2.06 REMARK 500 OG SER B 60 O HOH B 507 2.06 REMARK 500 O HOH A 532 O HOH A 534 2.09 REMARK 500 O ASN A 113 O HOH A 538 2.09 REMARK 500 N GLY A 107 O HOH A 552 2.12 REMARK 500 OH TYR A 229 O HOH A 549 2.12 REMARK 500 O TYR A 278 O HOH A 517 2.14 REMARK 500 O ASP A 100 O HOH A 537 2.15 REMARK 500 CB SER A 26 O SER A 128 2.17 REMARK 500 OE1 GLU B 151 O HOH B 532 2.19 REMARK 500 O HOH A 566 O HOH A 567 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 564 O HOH B 544 4456 1.93 REMARK 500 O HOH A 574 O HOH B 554 4456 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 63 CB CYS A 63 SG -0.143 REMARK 500 CYS A 63 CB CYS A 63 SG -0.160 REMARK 500 VAL A 84 CB VAL A 84 CG2 0.129 REMARK 500 TRP A 185 CB TRP A 185 CG -0.187 REMARK 500 GLU A 204 CB GLU A 204 CG 0.124 REMARK 500 GLU A 204 CG GLU A 204 CD 0.117 REMARK 500 GLU A 204 CD GLU A 204 OE1 0.202 REMARK 500 GLU A 204 CD GLU A 204 OE2 0.186 REMARK 500 CYS A 259 CB CYS A 259 SG -0.114 REMARK 500 GLU A 319 CG GLU A 319 CD 0.123 REMARK 500 GLU A 319 CD GLU A 319 OE2 0.070 REMARK 500 CYS B 63 CB CYS B 63 SG -0.160 REMARK 500 ASN B 113 CB ASN B 113 CG 0.141 REMARK 500 ASN B 113 CG ASN B 113 OD1 0.133 REMARK 500 TRP B 185 CB TRP B 185 CG -0.185 REMARK 500 GLU B 204 CB GLU B 204 CG 0.183 REMARK 500 GLU B 204 CG GLU B 204 CD 0.128 REMARK 500 GLU B 204 CD GLU B 204 OE1 0.153 REMARK 500 GLU B 204 CD GLU B 204 OE2 0.175 REMARK 500 ASN B 233 CB ASN B 233 CG 0.155 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 LEU A 34 CB - CG - CD2 ANGL. DEV. = -15.1 DEGREES REMARK 500 LEU A 57 CB - CG - CD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 PRO A 89 C - N - CA ANGL. DEV. = 12.2 DEGREES REMARK 500 LEU A 90 N - CA - CB ANGL. DEV. = -12.5 DEGREES REMARK 500 LEU A 92 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ASN A 113 CB - CA - C ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG A 228 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 228 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 LEU B 34 CB - CG - CD1 ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG B 228 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP B 250 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 250 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 260 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 263 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 293 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 3 -179.38 -50.89 REMARK 500 ASP A 6 44.73 10.37 REMARK 500 HIS A 10 62.65 -118.65 REMARK 500 ASP A 11 -74.46 6.01 REMARK 500 THR A 12 -70.35 -126.16 REMARK 500 TRP A 13 80.00 -38.85 REMARK 500 TYR A 14 74.75 -114.86 REMARK 500 ASP A 15 -61.56 -150.12 REMARK 500 LYS A 17 -100.51 45.02 REMARK 500 SER A 18 -117.06 -75.60 REMARK 500 THR A 19 42.28 19.55 REMARK 500 PHE A 23 82.96 41.43 REMARK 500 GLN A 24 -157.60 -174.15 REMARK 500 ARG A 25 -6.96 -47.06 REMARK 500 SER A 28 -4.04 -32.90 REMARK 500 ALA A 29 -170.07 41.37 REMARK 500 PHE A 48 71.56 -105.84 REMARK 500 ASP A 53 6.51 58.07 REMARK 500 VAL A 87 -174.18 -52.08 REMARK 500 LEU A 92 -154.36 -64.37 REMARK 500 ASN A 94 70.39 -109.17 REMARK 500 ASP A 108 95.59 -69.32 REMARK 500 THR A 109 4.68 -67.16 REMARK 500 LEU A 110 -67.03 -121.97 REMARK 500 GLN A 112 47.92 16.70 REMARK 500 ASN A 113 -178.99 -65.70 REMARK 500 ASP A 124 103.98 -179.44 REMARK 500 TYR A 171 51.57 -157.65 REMARK 500 VAL A 190 -57.95 -127.34 REMARK 500 VAL A 252 -55.85 -142.66 REMARK 500 LYS A 261 -59.66 139.97 REMARK 500 HIS A 300 70.30 -104.79 REMARK 500 PRO A 320 143.90 -36.37 REMARK 500 ASP B 6 39.69 15.25 REMARK 500 HIS B 10 76.93 -115.19 REMARK 500 ASP B 11 -71.78 -9.96 REMARK 500 THR B 12 3.80 -161.23 REMARK 500 ASP B 15 -87.63 -156.36 REMARK 500 THR B 16 70.55 -169.08 REMARK 500 LYS B 17 109.44 84.99 REMARK 500 SER B 18 75.61 -67.29 REMARK 500 LYS B 22 95.82 47.61 REMARK 500 GLN B 24 -64.84 -158.39 REMARK 500 ALA B 27 8.93 -67.82 REMARK 500 SER B 28 33.84 170.24 REMARK 500 ALA B 29 11.65 -67.83 REMARK 500 PHE B 30 62.38 -115.43 REMARK 500 LEU B 92 -135.63 -94.27 REMARK 500 PHE B 98 26.37 -74.14 REMARK 500 ASP B 100 -137.38 -66.50 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0VS A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0VS B 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G0I RELATED DB: PDB REMARK 900 RELATED ID: 4G0L RELATED DB: PDB DBREF 4G0K A 1 328 UNP P42620 YQJG_ECOLI 1 328 DBREF 4G0K B 1 328 UNP P42620 YQJG_ECOLI 1 328 SEQRES 1 A 328 MET GLY GLN LEU ILE ASP GLY VAL TRP HIS ASP THR TRP SEQRES 2 A 328 TYR ASP THR LYS SER THR GLY GLY LYS PHE GLN ARG SER SEQRES 3 A 328 ALA SER ALA PHE ARG ASN TRP LEU THR ALA ASP GLY ALA SEQRES 4 A 328 PRO GLY PRO THR GLY THR GLY GLY PHE ILE ALA GLU LYS SEQRES 5 A 328 ASP ARG TYR HIS LEU TYR VAL SER LEU ALA CYS PRO TRP SEQRES 6 A 328 ALA HIS ARG THR LEU ILE MET ARG LYS LEU LYS GLY LEU SEQRES 7 A 328 GLU PRO PHE ILE SER VAL SER VAL VAL ASN PRO LEU MET SEQRES 8 A 328 LEU GLU ASN GLY TRP THR PHE ASP ASP SER PHE PRO GLY SEQRES 9 A 328 ALA THR GLY ASP THR LEU TYR GLN ASN GLU PHE LEU TYR SEQRES 10 A 328 GLN LEU TYR LEU HIS ALA ASP PRO HIS TYR SER GLY ARG SEQRES 11 A 328 VAL THR VAL PRO VAL LEU TRP ASP LYS LYS ASN HIS THR SEQRES 12 A 328 ILE VAL SER ASN GLU SER ALA GLU ILE ILE ARG MET PHE SEQRES 13 A 328 ASN THR ALA PHE ASP ALA LEU GLY ALA LYS ALA GLY ASP SEQRES 14 A 328 TYR TYR PRO PRO ALA LEU GLN THR LYS ILE ASP GLU LEU SEQRES 15 A 328 ASN GLY TRP ILE TYR ASP THR VAL ASN ASN GLY VAL TYR SEQRES 16 A 328 LYS ALA GLY PHE ALA THR SER GLN GLU ALA TYR ASP GLU SEQRES 17 A 328 ALA VAL ALA LYS VAL PHE GLU SER LEU ALA ARG LEU GLU SEQRES 18 A 328 GLN ILE LEU GLY GLN HIS ARG TYR LEU THR GLY ASN GLN SEQRES 19 A 328 LEU THR GLU ALA ASP ILE ARG LEU TRP THR THR LEU VAL SEQRES 20 A 328 ARG PHE ASP PRO VAL TYR VAL THR HIS PHE LYS CYS ASP SEQRES 21 A 328 LYS HIS ARG ILE SER ASP TYR LEU ASN LEU TYR GLY PHE SEQRES 22 A 328 LEU ARG ASP ILE TYR GLN MET PRO GLY ILE ALA GLU THR SEQRES 23 A 328 VAL ASN PHE ASP HIS ILE ARG ASN HIS TYR PHE ARG SER SEQRES 24 A 328 HIS LYS THR ILE ASN PRO THR GLY ILE ILE SER ILE GLY SEQRES 25 A 328 PRO TRP GLN ASP LEU ASP GLU PRO HIS GLY ARG ASP VAL SEQRES 26 A 328 ARG PHE GLY SEQRES 1 B 328 MET GLY GLN LEU ILE ASP GLY VAL TRP HIS ASP THR TRP SEQRES 2 B 328 TYR ASP THR LYS SER THR GLY GLY LYS PHE GLN ARG SER SEQRES 3 B 328 ALA SER ALA PHE ARG ASN TRP LEU THR ALA ASP GLY ALA SEQRES 4 B 328 PRO GLY PRO THR GLY THR GLY GLY PHE ILE ALA GLU LYS SEQRES 5 B 328 ASP ARG TYR HIS LEU TYR VAL SER LEU ALA CYS PRO TRP SEQRES 6 B 328 ALA HIS ARG THR LEU ILE MET ARG LYS LEU LYS GLY LEU SEQRES 7 B 328 GLU PRO PHE ILE SER VAL SER VAL VAL ASN PRO LEU MET SEQRES 8 B 328 LEU GLU ASN GLY TRP THR PHE ASP ASP SER PHE PRO GLY SEQRES 9 B 328 ALA THR GLY ASP THR LEU TYR GLN ASN GLU PHE LEU TYR SEQRES 10 B 328 GLN LEU TYR LEU HIS ALA ASP PRO HIS TYR SER GLY ARG SEQRES 11 B 328 VAL THR VAL PRO VAL LEU TRP ASP LYS LYS ASN HIS THR SEQRES 12 B 328 ILE VAL SER ASN GLU SER ALA GLU ILE ILE ARG MET PHE SEQRES 13 B 328 ASN THR ALA PHE ASP ALA LEU GLY ALA LYS ALA GLY ASP SEQRES 14 B 328 TYR TYR PRO PRO ALA LEU GLN THR LYS ILE ASP GLU LEU SEQRES 15 B 328 ASN GLY TRP ILE TYR ASP THR VAL ASN ASN GLY VAL TYR SEQRES 16 B 328 LYS ALA GLY PHE ALA THR SER GLN GLU ALA TYR ASP GLU SEQRES 17 B 328 ALA VAL ALA LYS VAL PHE GLU SER LEU ALA ARG LEU GLU SEQRES 18 B 328 GLN ILE LEU GLY GLN HIS ARG TYR LEU THR GLY ASN GLN SEQRES 19 B 328 LEU THR GLU ALA ASP ILE ARG LEU TRP THR THR LEU VAL SEQRES 20 B 328 ARG PHE ASP PRO VAL TYR VAL THR HIS PHE LYS CYS ASP SEQRES 21 B 328 LYS HIS ARG ILE SER ASP TYR LEU ASN LEU TYR GLY PHE SEQRES 22 B 328 LEU ARG ASP ILE TYR GLN MET PRO GLY ILE ALA GLU THR SEQRES 23 B 328 VAL ASN PHE ASP HIS ILE ARG ASN HIS TYR PHE ARG SER SEQRES 24 B 328 HIS LYS THR ILE ASN PRO THR GLY ILE ILE SER ILE GLY SEQRES 25 B 328 PRO TRP GLN ASP LEU ASP GLU PRO HIS GLY ARG ASP VAL SEQRES 26 B 328 ARG PHE GLY HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET MES A 408 12 HET MES A 409 12 HET MES A 410 12 HET 0VS A 411 33 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HET SO4 B 406 5 HET SO4 B 407 5 HET SO4 B 408 5 HET MES B 409 12 HET 0VS B 410 33 HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM 0VS L-GAMMA-GLUTAMYL-S-(3-METHYL-1,4-DIOXO-1,4- HETNAM 2 0VS DIHYDRONAPHTHALEN-2-YL)-L-CYSTEINYLGLYCINE FORMUL 3 SO4 15(O4 S 2-) FORMUL 10 MES 4(C6 H13 N O4 S) FORMUL 13 0VS 2(C21 H23 N3 O8 S) FORMUL 24 HOH *139(H2 O) HELIX 1 1 CYS A 63 LYS A 76 1 14 HELIX 2 2 LEU A 78 PRO A 80 5 3 HELIX 3 3 PHE A 115 ALA A 123 1 9 HELIX 4 4 GLU A 148 ALA A 159 1 12 HELIX 5 5 PHE A 160 GLY A 164 5 5 HELIX 6 6 PRO A 172 ALA A 174 5 3 HELIX 7 7 LEU A 175 VAL A 190 1 16 HELIX 8 8 ASN A 192 PHE A 199 1 8 HELIX 9 9 SER A 202 LEU A 224 1 23 HELIX 10 10 THR A 236 ASP A 250 1 15 HELIX 11 11 VAL A 252 PHE A 257 1 6 HELIX 12 12 ARG A 263 ASP A 266 5 4 HELIX 13 13 TYR A 267 GLN A 279 1 13 HELIX 14 14 ILE A 283 VAL A 287 5 5 HELIX 15 15 ASN A 288 HIS A 300 1 13 HELIX 16 16 GLY A 322 PHE A 327 1 6 HELIX 17 17 CYS B 63 LYS B 76 1 14 HELIX 18 18 PHE B 115 HIS B 122 1 8 HELIX 19 19 GLU B 148 ALA B 159 1 12 HELIX 20 20 PHE B 160 GLY B 164 5 5 HELIX 21 21 PRO B 172 ALA B 174 5 3 HELIX 22 22 LEU B 175 THR B 189 1 15 HELIX 23 23 ASN B 192 ALA B 200 1 9 HELIX 24 24 SER B 202 LEU B 224 1 23 HELIX 25 25 THR B 236 ASP B 250 1 15 HELIX 26 26 ARG B 263 ASP B 266 5 4 HELIX 27 27 TYR B 267 MET B 280 1 14 HELIX 28 28 ILE B 283 VAL B 287 5 5 HELIX 29 29 ASN B 288 HIS B 300 1 13 HELIX 30 30 GLY B 322 PHE B 327 1 6 SHEET 1 A 2 LEU A 4 ILE A 5 0 SHEET 2 A 2 VAL A 8 TRP A 9 -1 O VAL A 8 N ILE A 5 SHEET 1 B 4 ILE A 82 VAL A 86 0 SHEET 2 B 4 TYR A 55 VAL A 59 1 N VAL A 59 O SER A 85 SHEET 3 B 4 VAL A 135 ASP A 138 -1 O TRP A 137 N HIS A 56 SHEET 4 B 4 THR A 143 SER A 146 -1 O SER A 146 N LEU A 136 SHEET 1 C 3 VAL B 8 HIS B 10 0 SHEET 2 C 3 GLN B 3 ILE B 5 -1 N ILE B 5 O VAL B 8 SHEET 3 C 3 GLY B 129 ARG B 130 -1 O GLY B 129 N LEU B 4 SHEET 1 D 4 ILE B 82 VAL B 86 0 SHEET 2 D 4 TYR B 55 VAL B 59 1 N VAL B 59 O SER B 85 SHEET 3 D 4 VAL B 135 ASP B 138 -1 O VAL B 135 N TYR B 58 SHEET 4 D 4 THR B 143 SER B 146 -1 O SER B 146 N LEU B 136 CISPEP 1 TYR A 14 ASP A 15 0 -2.17 CISPEP 2 GLY A 20 GLY A 21 0 5.69 CISPEP 3 PHE A 23 GLN A 24 0 -11.99 CISPEP 4 VAL A 133 PRO A 134 0 0.37 CISPEP 5 PHE A 327 GLY A 328 0 -2.27 CISPEP 6 TYR B 14 ASP B 15 0 -2.47 CISPEP 7 GLY B 20 GLY B 21 0 1.70 CISPEP 8 PHE B 23 GLN B 24 0 -1.30 CISPEP 9 GLY B 46 GLY B 47 0 -12.53 CISPEP 10 VAL B 133 PRO B 134 0 -5.44 CISPEP 11 LEU B 224 GLY B 225 0 26.40 CISPEP 12 PHE B 327 GLY B 328 0 -5.81 SITE 1 AC1 3 ARG A 73 LYS A 74 GLU A 285 SITE 1 AC2 4 ASP A 276 GLN A 279 HIS A 321 SO4 A 406 SITE 1 AC3 2 LYS A 261 HIS A 262 SITE 1 AC4 4 HIS A 262 ASP A 266 HOH A 560 HOH A 577 SITE 1 AC5 3 PRO A 103 GLY A 104 HOH A 537 SITE 1 AC6 3 ARG A 228 ASP A 324 SO4 A 402 SITE 1 AC7 3 ASN A 288 PHE A 289 ASP A 290 SITE 1 AC8 8 GLY A 168 ASP A 169 TYR A 170 TYR A 229 SITE 2 AC8 8 GLN A 234 LEU A 235 HOH A 542 LYS B 52 SITE 1 AC9 4 SER A 202 GLN A 203 GLU A 204 THR B 306 SITE 1 BC1 8 TRP A 65 ARG A 68 GLU A 148 ALA A 150 SITE 2 BC1 8 GLY A 184 TYR A 187 ARG A 241 0VS A 411 SITE 1 BC2 11 CYS A 63 TRP A 65 TRP A 96 ARG A 130 SITE 2 BC2 11 THR A 132 VAL A 133 PRO A 134 ASN A 147 SITE 3 BC2 11 GLU A 148 SER A 149 MES A 410 SITE 1 BC3 1 ARG B 73 SITE 1 BC4 7 TRP B 65 ARG B 68 GLU B 148 ALA B 150 SITE 2 BC4 7 TYR B 187 ARG B 241 0VS B 410 SITE 1 BC5 2 LYS B 261 HIS B 262 SITE 1 BC6 2 PRO B 103 GLY B 104 SITE 1 BC7 4 VAL B 287 ASN B 288 PHE B 289 ASP B 290 SITE 1 BC8 3 HIS B 262 ASP B 266 HOH B 549 SITE 1 BC9 3 ARG B 228 ASP B 324 MES B 409 SITE 1 CC1 3 SER B 202 GLN B 203 GLU B 204 SITE 1 CC2 6 ASP B 169 TYR B 170 TYR B 229 GLN B 234 SITE 2 CC2 6 LEU B 235 SO4 B 407 SITE 1 CC3 10 TRP B 65 TRP B 96 ARG B 130 THR B 132 SITE 2 CC3 10 VAL B 133 PRO B 134 ASN B 147 GLU B 148 SITE 3 CC3 10 SER B 149 SO4 B 402 CRYST1 148.410 148.410 105.171 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006738 0.003890 0.000000 0.00000 SCALE2 0.000000 0.007780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009508 0.00000