HEADER VIRAL PROTEIN 11-JUL-12 4G1O TITLE CRYSTAL STRUCTURE OF NEWCASTLE DISEASE VIRUS MATRIX PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEWCASTLE DISEASE VIRUS; SOURCE 3 ORGANISM_COMMON: NDV; SOURCE 4 ORGANISM_TAXID: 11177; SOURCE 5 STRAIN: CHICKEN/AUSTRALIA-VICTORIA/32; SOURCE 6 GENE: M; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-STRAND, VIRUS ASSEMBLY, MEMBRANE, VIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.MENG,M.G.ROSSMANN REVDAT 3 28-FEB-24 4G1O 1 REMARK REVDAT 2 12-SEP-12 4G1O 1 JRNL REVDAT 1 22-AUG-12 4G1O 0 JRNL AUTH A.J.BATTISTI,G.MENG,D.C.WINKLER,L.W.MCGINNES,P.PLEVKA, JRNL AUTH 2 A.C.STEVEN,T.G.MORRISON,M.G.ROSSMANN JRNL TITL STRUCTURE AND ASSEMBLY OF A PARAMYXOVIRUS MATRIX PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 13996 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22891297 JRNL DOI 10.1073/PNAS.1210275109 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 32197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1680 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2252 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5018 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.94000 REMARK 3 B22 (A**2) : 3.06000 REMARK 3 B33 (A**2) : -2.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.260 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.207 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.642 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5087 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6891 ; 1.809 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 647 ; 7.680 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;37.615 ;23.220 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 916 ;19.839 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.843 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 836 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3642 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5087 ; 5.114 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 52 ;23.997 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5024 ;20.928 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 361 REMARK 3 ORIGIN FOR THE GROUP (A): -30.0916 21.6280 15.4524 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: 0.2015 REMARK 3 T33: 0.0936 T12: 0.0787 REMARK 3 T13: 0.0048 T23: 0.0913 REMARK 3 L TENSOR REMARK 3 L11: 1.7958 L22: 0.0652 REMARK 3 L33: 2.5929 L12: -0.1573 REMARK 3 L13: -0.4502 L23: 0.0221 REMARK 3 S TENSOR REMARK 3 S11: 0.1057 S12: 0.1302 S13: 0.1622 REMARK 3 S21: -0.0298 S22: 0.0448 S23: 0.0451 REMARK 3 S31: -0.3631 S32: -0.6623 S33: -0.1505 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 363 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4382 15.0826 27.7650 REMARK 3 T TENSOR REMARK 3 T11: 0.0391 T22: 0.1175 REMARK 3 T33: 0.0568 T12: -0.0137 REMARK 3 T13: -0.0127 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 2.0300 L22: 0.5692 REMARK 3 L33: 2.7740 L12: -0.3249 REMARK 3 L13: -0.3062 L23: -0.0742 REMARK 3 S TENSOR REMARK 3 S11: 0.0292 S12: -0.4336 S13: 0.0657 REMARK 3 S21: 0.0240 S22: 0.1020 S23: -0.0448 REMARK 3 S31: -0.1061 S32: 0.3043 S33: -0.1312 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4G1O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34033 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 30.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, TRIS-CL, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.65550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.49350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.65550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.49350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 ARG A 5 REMARK 465 THR A 6 REMARK 465 ILE A 7 REMARK 465 GLY A 8 REMARK 465 LEU A 9 REMARK 465 TYR A 10 REMARK 465 PHE A 11 REMARK 465 ASP A 12 REMARK 465 ASP A 29 REMARK 465 ILE A 30 REMARK 465 GLY A 31 REMARK 465 ASP A 32 REMARK 465 GLY A 33 REMARK 465 LYS A 34 REMARK 465 LYS A 35 REMARK 465 ASN A 70 REMARK 465 GLU A 71 REMARK 465 GLU A 72 REMARK 465 VAL A 73 REMARK 465 THR A 74 REMARK 465 VAL A 75 REMARK 465 GLY A 76 REMARK 465 MET A 77 REMARK 465 ILE A 78 REMARK 465 SER A 79 REMARK 465 ASP A 80 REMARK 465 ASN A 81 REMARK 465 PRO A 82 REMARK 465 LYS A 83 REMARK 465 LYS A 363 REMARK 465 LYS A 364 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 ARG B 5 REMARK 465 THR B 6 REMARK 465 ILE B 7 REMARK 465 GLY B 8 REMARK 465 LEU B 9 REMARK 465 TYR B 10 REMARK 465 PHE B 11 REMARK 465 ASP B 12 REMARK 465 SER B 13 REMARK 465 ALA B 14 REMARK 465 LEU B 15 REMARK 465 PRO B 16 REMARK 465 LEU B 27 REMARK 465 GLN B 28 REMARK 465 ASP B 29 REMARK 465 ILE B 30 REMARK 465 GLY B 31 REMARK 465 ASP B 32 REMARK 465 GLY B 33 REMARK 465 LYS B 34 REMARK 465 LYS B 35 REMARK 465 ASN B 70 REMARK 465 GLU B 71 REMARK 465 GLU B 72 REMARK 465 VAL B 73 REMARK 465 THR B 74 REMARK 465 VAL B 75 REMARK 465 GLY B 76 REMARK 465 MET B 77 REMARK 465 ILE B 78 REMARK 465 SER B 79 REMARK 465 ASP B 80 REMARK 465 ASN B 81 REMARK 465 PRO B 82 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 124 OG1 CG2 REMARK 470 ASP A 228 CG OD1 OD2 REMARK 470 SER A 305 OG REMARK 470 THR B 124 OG1 CG2 REMARK 470 ASP B 228 CG OD1 OD2 REMARK 470 SER B 305 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 246 O GLY B 249 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 238 CG HIS A 238 CD2 0.061 REMARK 500 HIS A 354 CG HIS A 354 CD2 0.057 REMARK 500 HIS B 84 CG HIS B 84 CD2 0.054 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 17 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 SER A 56 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 PRO A 98 C - N - CD ANGL. DEV. = -12.9 DEGREES REMARK 500 LYS A 250 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 ARG A 335 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET B 113 CG - SD - CE ANGL. DEV. = -10.8 DEGREES REMARK 500 GLY B 249 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 LYS B 250 N - CA - C ANGL. DEV. = -20.4 DEGREES REMARK 500 VAL B 273 CB - CA - C ANGL. DEV. = -13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 17 -11.92 80.75 REMARK 500 ASN A 19 -33.16 -35.72 REMARK 500 PRO A 24 39.48 -95.62 REMARK 500 ILE A 25 69.60 -114.75 REMARK 500 THR A 112 43.71 -107.03 REMARK 500 THR A 122 -81.46 -130.16 REMARK 500 LYS A 147 1.13 83.18 REMARK 500 VAL A 181 147.10 -170.52 REMARK 500 LYS A 251 72.34 57.63 REMARK 500 ILE B 37 83.52 -154.64 REMARK 500 ASP B 55 -7.74 -148.75 REMARK 500 THR B 122 -87.85 -126.53 REMARK 500 LYS B 147 7.03 82.51 REMARK 500 LYS B 247 -0.35 75.13 REMARK 500 ASP B 255 -71.57 -67.94 REMARK 500 ASP B 265 77.34 59.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 250 LYS A 251 105.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 249 10.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G1G RELATED DB: PDB REMARK 900 RELATED ID: 4G1L RELATED DB: PDB DBREF 4G1O A 1 364 UNP P11206 MATRX_NDVA 1 364 DBREF 4G1O B 1 364 UNP P11206 MATRX_NDVA 1 364 SEQRES 1 A 364 MET ASP SER SER ARG THR ILE GLY LEU TYR PHE ASP SER SEQRES 2 A 364 ALA LEU PRO SER SER ASN LEU LEU ALA PHE PRO ILE VAL SEQRES 3 A 364 LEU GLN ASP ILE GLY ASP GLY LYS LYS GLN ILE ALA PRO SEQRES 4 A 364 GLN TYR ARG ILE GLN ARG LEU ASP SER TRP THR ASP SER SEQRES 5 A 364 LYS GLU ASP SER VAL PHE ILE THR THR TYR GLY PHE ILE SEQRES 6 A 364 PHE GLN VAL GLY ASN GLU GLU VAL THR VAL GLY MET ILE SEQRES 7 A 364 SER ASP ASN PRO LYS HIS GLU LEU LEU SER ALA ALA MET SEQRES 8 A 364 LEU CYS LEU GLY SER VAL PRO ASN VAL GLY ASP LEU VAL SEQRES 9 A 364 GLU LEU ALA ARG ALA CYS LEU THR MET VAL VAL THR CYS SEQRES 10 A 364 LYS LYS SER ALA THR ASP THR GLU ARG MET VAL PHE SER SEQRES 11 A 364 VAL VAL GLN ALA PRO GLN VAL LEU GLN SER CYS ARG VAL SEQRES 12 A 364 VAL ALA ASN LYS TYR SER SER VAL ASN ALA VAL LYS HIS SEQRES 13 A 364 VAL LYS ALA PRO GLU LYS ILE PRO GLY SER GLY THR LEU SEQRES 14 A 364 GLU TYR LYS VAL ASN PHE VAL SER LEU THR VAL VAL PRO SEQRES 15 A 364 ARG LYS ASP VAL TYR LYS ILE PRO THR ALA ALA LEU LYS SEQRES 16 A 364 VAL SER GLY SER SER LEU TYR ASN LEU ALA LEU ASN VAL SEQRES 17 A 364 THR ILE ASP VAL GLU VAL ASP PRO LYS SER PRO LEU VAL SEQRES 18 A 364 LYS SER LEU SER LYS SER ASP SER GLY TYR TYR ALA ASN SEQRES 19 A 364 LEU PHE LEU HIS ILE GLY LEU MET SER THR VAL ASP LYS SEQRES 20 A 364 LYS GLY LYS LYS VAL THR PHE ASP LYS LEU GLU ARG LYS SEQRES 21 A 364 ILE ARG ARG LEU ASP LEU SER VAL GLY LEU SER ASP VAL SEQRES 22 A 364 LEU GLY PRO SER VAL LEU VAL LYS ALA ARG GLY ALA ARG SEQRES 23 A 364 THR ARG LEU LEU ALA PRO PHE PHE SER SER SER GLY THR SEQRES 24 A 364 ALA CYS TYR PRO ILE SER ASN ALA SER PRO GLN VAL ALA SEQRES 25 A 364 LYS ILE LEU TRP SER GLN THR ALA ARG LEU ARG SER VAL SEQRES 26 A 364 LYS VAL ILE ILE GLN ALA GLY THR GLN ARG ALA VAL ALA SEQRES 27 A 364 VAL THR ALA ASP HIS GLU VAL THR SER THR LYS ILE GLU SEQRES 28 A 364 LYS ARG HIS THR ILE ALA LYS TYR ASN PRO PHE LYS LYS SEQRES 1 B 364 MET ASP SER SER ARG THR ILE GLY LEU TYR PHE ASP SER SEQRES 2 B 364 ALA LEU PRO SER SER ASN LEU LEU ALA PHE PRO ILE VAL SEQRES 3 B 364 LEU GLN ASP ILE GLY ASP GLY LYS LYS GLN ILE ALA PRO SEQRES 4 B 364 GLN TYR ARG ILE GLN ARG LEU ASP SER TRP THR ASP SER SEQRES 5 B 364 LYS GLU ASP SER VAL PHE ILE THR THR TYR GLY PHE ILE SEQRES 6 B 364 PHE GLN VAL GLY ASN GLU GLU VAL THR VAL GLY MET ILE SEQRES 7 B 364 SER ASP ASN PRO LYS HIS GLU LEU LEU SER ALA ALA MET SEQRES 8 B 364 LEU CYS LEU GLY SER VAL PRO ASN VAL GLY ASP LEU VAL SEQRES 9 B 364 GLU LEU ALA ARG ALA CYS LEU THR MET VAL VAL THR CYS SEQRES 10 B 364 LYS LYS SER ALA THR ASP THR GLU ARG MET VAL PHE SER SEQRES 11 B 364 VAL VAL GLN ALA PRO GLN VAL LEU GLN SER CYS ARG VAL SEQRES 12 B 364 VAL ALA ASN LYS TYR SER SER VAL ASN ALA VAL LYS HIS SEQRES 13 B 364 VAL LYS ALA PRO GLU LYS ILE PRO GLY SER GLY THR LEU SEQRES 14 B 364 GLU TYR LYS VAL ASN PHE VAL SER LEU THR VAL VAL PRO SEQRES 15 B 364 ARG LYS ASP VAL TYR LYS ILE PRO THR ALA ALA LEU LYS SEQRES 16 B 364 VAL SER GLY SER SER LEU TYR ASN LEU ALA LEU ASN VAL SEQRES 17 B 364 THR ILE ASP VAL GLU VAL ASP PRO LYS SER PRO LEU VAL SEQRES 18 B 364 LYS SER LEU SER LYS SER ASP SER GLY TYR TYR ALA ASN SEQRES 19 B 364 LEU PHE LEU HIS ILE GLY LEU MET SER THR VAL ASP LYS SEQRES 20 B 364 LYS GLY LYS LYS VAL THR PHE ASP LYS LEU GLU ARG LYS SEQRES 21 B 364 ILE ARG ARG LEU ASP LEU SER VAL GLY LEU SER ASP VAL SEQRES 22 B 364 LEU GLY PRO SER VAL LEU VAL LYS ALA ARG GLY ALA ARG SEQRES 23 B 364 THR ARG LEU LEU ALA PRO PHE PHE SER SER SER GLY THR SEQRES 24 B 364 ALA CYS TYR PRO ILE SER ASN ALA SER PRO GLN VAL ALA SEQRES 25 B 364 LYS ILE LEU TRP SER GLN THR ALA ARG LEU ARG SER VAL SEQRES 26 B 364 LYS VAL ILE ILE GLN ALA GLY THR GLN ARG ALA VAL ALA SEQRES 27 B 364 VAL THR ALA ASP HIS GLU VAL THR SER THR LYS ILE GLU SEQRES 28 B 364 LYS ARG HIS THR ILE ALA LYS TYR ASN PRO PHE LYS LYS FORMUL 3 HOH *71(H2 O) HELIX 1 1 SER A 18 PHE A 23 5 6 HELIX 2 2 ASP A 102 LEU A 111 1 10 HELIX 3 3 PRO A 135 GLN A 139 5 5 HELIX 4 4 CYS A 141 LYS A 147 1 7 HELIX 5 5 ALA A 153 VAL A 157 1 5 HELIX 6 6 ALA A 159 ILE A 163 5 5 HELIX 7 7 ALA A 192 VAL A 196 5 5 HELIX 8 8 SER A 218 LEU A 224 5 7 HELIX 9 9 THR A 253 ASP A 265 1 13 HELIX 10 10 LEU A 290 PHE A 294 5 5 HELIX 11 11 ILE A 304 SER A 308 1 5 HELIX 12 12 SER A 308 GLN A 318 1 11 HELIX 13 13 THR A 333 ALA A 338 1 6 HELIX 14 14 SER B 17 PHE B 23 5 7 HELIX 15 15 ASP B 102 LEU B 111 1 10 HELIX 16 16 PRO B 135 GLN B 139 5 5 HELIX 17 17 CYS B 141 LYS B 147 1 7 HELIX 18 18 ALA B 153 VAL B 157 1 5 HELIX 19 19 ALA B 159 ILE B 163 5 5 HELIX 20 20 PRO B 182 VAL B 186 5 5 HELIX 21 21 PRO B 190 LYS B 195 1 6 HELIX 22 22 SER B 218 LEU B 224 5 7 HELIX 23 23 THR B 253 ASP B 265 1 13 HELIX 24 24 LEU B 290 PHE B 294 5 5 HELIX 25 25 ILE B 304 SER B 308 1 5 HELIX 26 26 SER B 308 GLN B 318 1 11 HELIX 27 27 THR B 333 THR B 340 1 8 SHEET 1 A 6 GLU A 85 PRO A 98 0 SHEET 2 A 6 SER A 56 GLN A 67 -1 N THR A 61 O LEU A 92 SHEET 3 A 6 LEU A 169 VAL A 181 -1 O GLU A 170 N PHE A 66 SHEET 4 A 6 VAL A 114 ALA A 121 -1 N VAL A 115 O TYR A 171 SHEET 5 A 6 GLU A 125 GLN A 133 -1 O SER A 130 N THR A 116 SHEET 6 A 6 TYR A 148 ASN A 152 -1 O VAL A 151 N MET A 127 SHEET 1 B 5 GLU A 85 PRO A 98 0 SHEET 2 B 5 SER A 56 GLN A 67 -1 N THR A 61 O LEU A 92 SHEET 3 B 5 LEU A 169 VAL A 181 -1 O GLU A 170 N PHE A 66 SHEET 4 B 5 GLN A 40 ARG A 45 1 N ARG A 42 O LEU A 178 SHEET 5 B 5 ASN A 360 PRO A 361 -1 O ASN A 360 N TYR A 41 SHEET 1 C 5 SER A 225 SER A 227 0 SHEET 2 C 5 GLY A 230 SER A 243 -1 O GLY A 230 N SER A 227 SHEET 3 C 5 LEU A 201 VAL A 212 -1 N ILE A 210 O ALA A 233 SHEET 4 C 5 ALA A 320 ALA A 331 -1 O SER A 324 N THR A 209 SHEET 5 C 5 HIS A 343 SER A 347 -1 O VAL A 345 N VAL A 327 SHEET 1 D 2 VAL A 245 ASP A 246 0 SHEET 2 D 2 LYS A 250 LYS A 251 -1 O LYS A 250 N ASP A 246 SHEET 1 E 4 THR A 299 PRO A 303 0 SHEET 2 E 4 SER A 277 ALA A 282 -1 N VAL A 280 O ALA A 300 SHEET 3 E 4 LEU A 266 SER A 271 -1 N SER A 271 O SER A 277 SHEET 4 E 4 LYS A 349 ILE A 350 1 O LYS A 349 N VAL A 268 SHEET 1 F 6 GLU B 85 PRO B 98 0 SHEET 2 F 6 SER B 56 GLN B 67 -1 N ILE B 65 O LEU B 87 SHEET 3 F 6 LEU B 169 VAL B 181 -1 O LYS B 172 N PHE B 64 SHEET 4 F 6 VAL B 114 ALA B 121 -1 N VAL B 115 O TYR B 171 SHEET 5 F 6 GLU B 125 GLN B 133 -1 O VAL B 128 N LYS B 118 SHEET 6 F 6 TYR B 148 ASN B 152 -1 O SER B 149 N PHE B 129 SHEET 1 G 5 GLU B 85 PRO B 98 0 SHEET 2 G 5 SER B 56 GLN B 67 -1 N ILE B 65 O LEU B 87 SHEET 3 G 5 LEU B 169 VAL B 181 -1 O LYS B 172 N PHE B 64 SHEET 4 G 5 GLN B 40 ARG B 45 1 N ARG B 42 O LEU B 178 SHEET 5 G 5 ASN B 360 PRO B 361 -1 O ASN B 360 N TYR B 41 SHEET 1 H 5 SER B 225 SER B 227 0 SHEET 2 H 5 GLY B 230 SER B 243 -1 O TYR B 232 N SER B 225 SHEET 3 H 5 LEU B 201 VAL B 212 -1 N TYR B 202 O MET B 242 SHEET 4 H 5 ALA B 320 ALA B 331 -1 O GLN B 330 N ASN B 203 SHEET 5 H 5 HIS B 343 SER B 347 -1 O VAL B 345 N VAL B 327 SHEET 1 I 4 THR B 299 PRO B 303 0 SHEET 2 I 4 SER B 277 ALA B 282 -1 N VAL B 278 O TYR B 302 SHEET 3 I 4 LEU B 266 SER B 271 -1 N SER B 267 O LYS B 281 SHEET 4 I 4 LYS B 349 ILE B 350 1 O LYS B 349 N LEU B 266 CISPEP 1 PHE A 23 PRO A 24 0 8.56 CISPEP 2 ASP A 246 LYS A 247 0 -26.45 CISPEP 3 PHE B 23 PRO B 24 0 9.47 CISPEP 4 LYS B 250 LYS B 251 0 -2.70 CRYST1 163.311 46.987 117.410 90.00 132.05 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006123 0.000000 0.005523 0.00000 SCALE2 0.000000 0.021282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011470 0.00000