HEADER VIRAL PROTEIN 12-JUL-12 4G2K TITLE CRYSTAL STRUCTURE OF THE MARBURG VIRUS GP2 ECTODOMAIN IN ITS POST- TITLE 2 FUSION CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL CONTROL PROTEIN GCN4, ENVELOPE GLYCOPROTEIN GP2 COMPND 3 CHIMERA; COMPND 4 CHAIN: A, B, C; COMPND 5 FRAGMENT: SEE REMARK 999; COMPND 6 SYNONYM: AMINO ACID BIOSYNTHESIS REGULATORY PROTEIN, VIRION SPIKE COMPND 7 GLYCOPROTEIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE, LAKE VICTORIA SOURCE 3 MARBURGVIRUS; SOURCE 4 ORGANISM_COMMON: YEAST, MARBURG VIRUS; SOURCE 5 ORGANISM_TAXID: 4932, 33728; SOURCE 6 GENE: GCN4, GP, GP2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS GP2-GCN4 FUSION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,J.F.KOELLHOFFER,J.S.HARRISON,R.TORO,R.C.BHOSLE, AUTHOR 2 K.CHANDRAN,J.R.LAI,S.C.ALMO REVDAT 4 13-SEP-23 4G2K 1 REMARK SEQADV REVDAT 3 26-JUL-17 4G2K 1 SOURCE REMARK REVDAT 2 17-OCT-12 4G2K 1 JRNL REVDAT 1 12-SEP-12 4G2K 0 JRNL AUTH J.F.KOELLHOFFER,V.N.MALASHKEVICH,J.S.HARRISON,R.TORO, JRNL AUTH 2 R.C.BHOSLE,K.CHANDRAN,S.C.ALMO,J.R.LAI JRNL TITL CRYSTAL STRUCTURE OF THE MARBURG VIRUS GP2 CORE DOMAIN IN JRNL TITL 2 ITS POSTFUSION CONFORMATION. JRNL REF BIOCHEMISTRY V. 51 7665 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22935026 JRNL DOI 10.1021/BI300976M REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 26608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1336 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1763 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2635 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 251 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.380 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2725 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3665 ; 1.291 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ; 4.170 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;35.171 ;24.275 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 579 ;15.391 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.011 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 434 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1949 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : 1 REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 1 NULL (A**2): 168 ; 4.090 ;14.140 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : 1 REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 2 NULL (A**2): 166 ; 4.290 ;14.140 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : 1 REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 3 NULL (A**2): 164 ; 3.470 ;14.140 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 524 A 633 REMARK 3 RESIDUE RANGE : A 701 A 701 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4891 -27.4697 5.4627 REMARK 3 T TENSOR REMARK 3 T11: 0.0226 T22: 0.0721 REMARK 3 T33: 0.0478 T12: -0.0118 REMARK 3 T13: 0.0052 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.2462 L22: 2.3881 REMARK 3 L33: 2.7560 L12: -0.1371 REMARK 3 L13: 0.0954 L23: -2.3922 REMARK 3 S TENSOR REMARK 3 S11: -0.0372 S12: -0.0175 S13: -0.0077 REMARK 3 S21: 0.1012 S22: -0.0434 S23: -0.0604 REMARK 3 S31: -0.0832 S32: 0.0339 S33: 0.0806 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 524 B 631 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8891 -31.8929 1.8409 REMARK 3 T TENSOR REMARK 3 T11: 0.0458 T22: 0.0770 REMARK 3 T33: 0.0995 T12: -0.0200 REMARK 3 T13: 0.0076 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.1322 L22: 0.9817 REMARK 3 L33: 1.9550 L12: 0.1960 REMARK 3 L13: -0.2775 L23: -1.2071 REMARK 3 S TENSOR REMARK 3 S11: -0.0727 S12: 0.0131 S13: -0.0527 REMARK 3 S21: -0.1259 S22: 0.1157 S23: 0.0261 REMARK 3 S31: 0.1761 S32: -0.1467 S33: -0.0430 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 525 C 631 REMARK 3 RESIDUE RANGE : C 700 C 700 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2152 -29.8400 2.7380 REMARK 3 T TENSOR REMARK 3 T11: 0.0370 T22: 0.1048 REMARK 3 T33: 0.1375 T12: -0.0145 REMARK 3 T13: -0.0198 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 0.1254 L22: 2.5747 REMARK 3 L33: 2.8547 L12: 0.2094 REMARK 3 L13: -0.4200 L23: -2.4308 REMARK 3 S TENSOR REMARK 3 S11: -0.0415 S12: -0.0129 S13: -0.0400 REMARK 3 S21: -0.0920 S22: -0.0584 S23: -0.0757 REMARK 3 S31: 0.1250 S32: 0.0916 S33: 0.0999 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 4 REMARK 4 4G2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 SAGITTAL FOCUSING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26888 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.77500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0, DM 6.2 REMARK 200 STARTING MODEL: PDB ENTRY 2EBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M SODIUM ACETATE, 0.085 M TRIS REMARK 280 -HCL, PH 8.5, 25.5% PEG3350, 15% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 26.28700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 73.76450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.28700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 73.76450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 828 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 509 REMARK 465 HIS A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 465 HIS A 513 REMARK 465 HIS A 514 REMARK 465 HIS A 515 REMARK 465 GLU A 516 REMARK 465 ASN A 517 REMARK 465 LEU A 518 REMARK 465 TYR A 519 REMARK 465 PHE A 520 REMARK 465 GLN A 521 REMARK 465 GLY A 522 REMARK 465 ASN A 523 REMARK 465 MET B 509 REMARK 465 HIS B 510 REMARK 465 HIS B 511 REMARK 465 HIS B 512 REMARK 465 HIS B 513 REMARK 465 HIS B 514 REMARK 465 HIS B 515 REMARK 465 GLU B 516 REMARK 465 ASN B 517 REMARK 465 LEU B 518 REMARK 465 TYR B 519 REMARK 465 PHE B 520 REMARK 465 GLN B 521 REMARK 465 GLY B 522 REMARK 465 ASN B 523 REMARK 465 GLN B 632 REMARK 465 LYS B 633 REMARK 465 MET C 509 REMARK 465 HIS C 510 REMARK 465 HIS C 511 REMARK 465 HIS C 512 REMARK 465 HIS C 513 REMARK 465 HIS C 514 REMARK 465 HIS C 515 REMARK 465 GLU C 516 REMARK 465 ASN C 517 REMARK 465 LEU C 518 REMARK 465 TYR C 519 REMARK 465 PHE C 520 REMARK 465 GLN C 521 REMARK 465 GLY C 522 REMARK 465 ASN C 523 REMARK 465 MET C 524 REMARK 465 GLN C 632 REMARK 465 LYS C 633 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 630 -146.32 -109.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-028566 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN IS A CHIMERA COMPRISING AN N-TERMINAL EXPRESSION TAG, REMARK 999 THE LEUCINE ZIPPER DOMAIN (UNP RESIDUES 250-279) OF GCN4, AND THE REMARK 999 ECTODOMAIN (UNP RESIDUES 554-633) OF GP2. DBREF 4G2K A 524 553 UNP P03069 GCN4_YEAST 250 279 DBREF 4G2K A 554 633 UNP P35254 VGP_MABVP 554 633 DBREF 4G2K B 524 553 UNP P03069 GCN4_YEAST 250 279 DBREF 4G2K B 554 633 UNP P35254 VGP_MABVP 554 633 DBREF 4G2K C 524 553 UNP P03069 GCN4_YEAST 250 279 DBREF 4G2K C 554 633 UNP P35254 VGP_MABVP 554 633 SEQADV 4G2K MET A 509 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS A 510 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS A 511 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS A 512 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS A 513 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS A 514 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS A 515 UNP P03069 EXPRESSION TAG SEQADV 4G2K GLU A 516 UNP P03069 EXPRESSION TAG SEQADV 4G2K ASN A 517 UNP P03069 EXPRESSION TAG SEQADV 4G2K LEU A 518 UNP P03069 EXPRESSION TAG SEQADV 4G2K TYR A 519 UNP P03069 EXPRESSION TAG SEQADV 4G2K PHE A 520 UNP P03069 EXPRESSION TAG SEQADV 4G2K GLN A 521 UNP P03069 EXPRESSION TAG SEQADV 4G2K GLY A 522 UNP P03069 EXPRESSION TAG SEQADV 4G2K ASN A 523 UNP P03069 EXPRESSION TAG SEQADV 4G2K ILE A 527 UNP P03069 LEU 253 ENGINEERED MUTATION SEQADV 4G2K ILE A 531 UNP P03069 VAL 257 ENGINEERED MUTATION SEQADV 4G2K ILE A 534 UNP P03069 LEU 260 ENGINEERED MUTATION SEQADV 4G2K ILE A 538 UNP P03069 ASN 264 ENGINEERED MUTATION SEQADV 4G2K ILE A 541 UNP P03069 LEU 267 ENGINEERED MUTATION SEQADV 4G2K ILE A 545 UNP P03069 VAL 271 ENGINEERED MUTATION SEQADV 4G2K ILE A 548 UNP P03069 LEU 274 ENGINEERED MUTATION SEQADV 4G2K ILE A 552 UNP P03069 VAL 278 ENGINEERED MUTATION SEQADV 4G2K SER A 557 UNP P35254 CYS 557 ENGINEERED MUTATION SEQADV 4G2K SER A 610 UNP P35254 CYS 610 ENGINEERED MUTATION SEQADV 4G2K MET B 509 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS B 510 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS B 511 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS B 512 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS B 513 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS B 514 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS B 515 UNP P03069 EXPRESSION TAG SEQADV 4G2K GLU B 516 UNP P03069 EXPRESSION TAG SEQADV 4G2K ASN B 517 UNP P03069 EXPRESSION TAG SEQADV 4G2K LEU B 518 UNP P03069 EXPRESSION TAG SEQADV 4G2K TYR B 519 UNP P03069 EXPRESSION TAG SEQADV 4G2K PHE B 520 UNP P03069 EXPRESSION TAG SEQADV 4G2K GLN B 521 UNP P03069 EXPRESSION TAG SEQADV 4G2K GLY B 522 UNP P03069 EXPRESSION TAG SEQADV 4G2K ASN B 523 UNP P03069 EXPRESSION TAG SEQADV 4G2K ILE B 527 UNP P03069 LEU 253 ENGINEERED MUTATION SEQADV 4G2K ILE B 531 UNP P03069 VAL 257 ENGINEERED MUTATION SEQADV 4G2K ILE B 534 UNP P03069 LEU 260 ENGINEERED MUTATION SEQADV 4G2K ILE B 538 UNP P03069 ASN 264 ENGINEERED MUTATION SEQADV 4G2K ILE B 541 UNP P03069 LEU 267 ENGINEERED MUTATION SEQADV 4G2K ILE B 545 UNP P03069 VAL 271 ENGINEERED MUTATION SEQADV 4G2K ILE B 548 UNP P03069 LEU 274 ENGINEERED MUTATION SEQADV 4G2K ILE B 552 UNP P03069 VAL 278 ENGINEERED MUTATION SEQADV 4G2K SER B 557 UNP P35254 CYS 557 ENGINEERED MUTATION SEQADV 4G2K SER B 610 UNP P35254 CYS 610 ENGINEERED MUTATION SEQADV 4G2K MET C 509 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS C 510 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS C 511 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS C 512 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS C 513 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS C 514 UNP P03069 EXPRESSION TAG SEQADV 4G2K HIS C 515 UNP P03069 EXPRESSION TAG SEQADV 4G2K GLU C 516 UNP P03069 EXPRESSION TAG SEQADV 4G2K ASN C 517 UNP P03069 EXPRESSION TAG SEQADV 4G2K LEU C 518 UNP P03069 EXPRESSION TAG SEQADV 4G2K TYR C 519 UNP P03069 EXPRESSION TAG SEQADV 4G2K PHE C 520 UNP P03069 EXPRESSION TAG SEQADV 4G2K GLN C 521 UNP P03069 EXPRESSION TAG SEQADV 4G2K GLY C 522 UNP P03069 EXPRESSION TAG SEQADV 4G2K ASN C 523 UNP P03069 EXPRESSION TAG SEQADV 4G2K ILE C 527 UNP P03069 LEU 253 ENGINEERED MUTATION SEQADV 4G2K ILE C 531 UNP P03069 VAL 257 ENGINEERED MUTATION SEQADV 4G2K ILE C 534 UNP P03069 LEU 260 ENGINEERED MUTATION SEQADV 4G2K ILE C 538 UNP P03069 ASN 264 ENGINEERED MUTATION SEQADV 4G2K ILE C 541 UNP P03069 LEU 267 ENGINEERED MUTATION SEQADV 4G2K ILE C 545 UNP P03069 VAL 271 ENGINEERED MUTATION SEQADV 4G2K ILE C 548 UNP P03069 LEU 274 ENGINEERED MUTATION SEQADV 4G2K ILE C 552 UNP P03069 VAL 278 ENGINEERED MUTATION SEQADV 4G2K SER C 557 UNP P35254 CYS 557 ENGINEERED MUTATION SEQADV 4G2K SER C 610 UNP P35254 CYS 610 ENGINEERED MUTATION SEQRES 1 A 125 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 A 125 GLY ASN MET LYS GLN ILE GLU ASP LYS ILE GLU GLU ILE SEQRES 3 A 125 LEU SER LYS ILE TYR HIS ILE GLU ASN GLU ILE ALA ARG SEQRES 4 A 125 ILE LYS LYS LEU ILE GLY ASN LEU VAL SER ARG LEU ARG SEQRES 5 A 125 ARG LEU ALA ASN GLN THR ALA LYS SER LEU GLU LEU LEU SEQRES 6 A 125 LEU ARG VAL THR THR GLU GLU ARG THR PHE SER LEU ILE SEQRES 7 A 125 ASN ARG HIS ALA ILE ASP PHE LEU LEU THR ARG TRP GLY SEQRES 8 A 125 GLY THR CYS LYS VAL LEU GLY PRO ASP CYS SER ILE GLY SEQRES 9 A 125 ILE GLU ASP LEU SER ARG ASN ILE SER GLU GLN ILE ASP SEQRES 10 A 125 GLN ILE LYS LYS ASP GLU GLN LYS SEQRES 1 B 125 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 B 125 GLY ASN MET LYS GLN ILE GLU ASP LYS ILE GLU GLU ILE SEQRES 3 B 125 LEU SER LYS ILE TYR HIS ILE GLU ASN GLU ILE ALA ARG SEQRES 4 B 125 ILE LYS LYS LEU ILE GLY ASN LEU VAL SER ARG LEU ARG SEQRES 5 B 125 ARG LEU ALA ASN GLN THR ALA LYS SER LEU GLU LEU LEU SEQRES 6 B 125 LEU ARG VAL THR THR GLU GLU ARG THR PHE SER LEU ILE SEQRES 7 B 125 ASN ARG HIS ALA ILE ASP PHE LEU LEU THR ARG TRP GLY SEQRES 8 B 125 GLY THR CYS LYS VAL LEU GLY PRO ASP CYS SER ILE GLY SEQRES 9 B 125 ILE GLU ASP LEU SER ARG ASN ILE SER GLU GLN ILE ASP SEQRES 10 B 125 GLN ILE LYS LYS ASP GLU GLN LYS SEQRES 1 C 125 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 C 125 GLY ASN MET LYS GLN ILE GLU ASP LYS ILE GLU GLU ILE SEQRES 3 C 125 LEU SER LYS ILE TYR HIS ILE GLU ASN GLU ILE ALA ARG SEQRES 4 C 125 ILE LYS LYS LEU ILE GLY ASN LEU VAL SER ARG LEU ARG SEQRES 5 C 125 ARG LEU ALA ASN GLN THR ALA LYS SER LEU GLU LEU LEU SEQRES 6 C 125 LEU ARG VAL THR THR GLU GLU ARG THR PHE SER LEU ILE SEQRES 7 C 125 ASN ARG HIS ALA ILE ASP PHE LEU LEU THR ARG TRP GLY SEQRES 8 C 125 GLY THR CYS LYS VAL LEU GLY PRO ASP CYS SER ILE GLY SEQRES 9 C 125 ILE GLU ASP LEU SER ARG ASN ILE SER GLU GLN ILE ASP SEQRES 10 C 125 GLN ILE LYS LYS ASP GLU GLN LYS HET GOL A 701 6 HET CL A 702 1 HET GOL C 700 6 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 CL CL 1- FORMUL 7 HOH *251(H2 O) HELIX 1 1 MET A 524 THR A 596 1 73 HELIX 2 2 ARG A 597 GLY A 599 5 3 HELIX 3 3 GLY A 600 GLY A 606 1 7 HELIX 4 4 PRO A 607 ILE A 611 5 5 HELIX 5 5 LEU A 616 GLU A 631 1 16 HELIX 6 6 LYS B 525 LEU B 595 1 71 HELIX 7 7 THR B 596 GLY B 599 5 4 HELIX 8 8 GLY B 600 GLY B 606 1 7 HELIX 9 9 PRO B 607 ILE B 611 5 5 HELIX 10 10 LEU B 616 LYS B 629 1 14 HELIX 11 11 GLN C 526 THR C 596 1 71 HELIX 12 12 ARG C 597 GLY C 599 5 3 HELIX 13 13 GLY C 600 GLY C 606 1 7 HELIX 14 14 PRO C 607 ILE C 611 5 5 HELIX 15 15 LEU C 616 LYS C 629 1 14 SSBOND 1 CYS A 602 CYS A 609 1555 1555 2.07 SSBOND 2 CYS B 602 CYS B 609 1555 1555 2.08 SSBOND 3 CYS C 602 CYS C 609 1555 1555 2.08 SITE 1 AC1 6 PHE A 593 LEU A 594 ARG A 597 HOH A 829 SITE 2 AC1 6 HOH A 874 TRP C 598 SITE 1 AC2 5 SER A 584 ASN A 587 ASN B 587 HOH B 724 SITE 2 AC2 5 ASN C 587 SITE 1 AC3 5 ARG C 588 ASP C 592 THR C 601 CYS C 609 SITE 2 AC3 5 HOH C 883 CRYST1 52.574 147.529 42.198 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019021 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006778 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023698 0.00000