HEADER TRANSFERASE/TRANSFERASE INHIBITOR 12-JUL-12 4G2R TITLE CRYSTAL STRUCTURE OF THE CARBOXYLTRANSFERASE SUBUNIT OF ACC (ACCD6) IN TITLE 2 COMPLEX WITH INHIBITOR HALOXYFOP FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACCD6, CARBOXYLTRANSFERASE BETA-SUBUNIT OF ACYL-COA COMPND 3 CARBOXYLASE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: PCCASE, PROPANOYL-COA:CARBON DIOXIDE LIGASE; COMPND 6 EC: 6.4.1.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: ACCD6, MT2307, MTCY427.28, RV2247; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS STRUCTURAL GENOMICS, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, KEYWDS 2 CROTONASE SUPER FAMILY, CARBOXYLTRANSFERASE, TRANSFERASE-HERBICIDE KEYWDS 3 COMPLEX, TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX, KEYWDS 4 PSI-2, PROTEIN STRUCTURE INITIATIVE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.M.REDDY,J.B.BRUNING,C.THURMAN,M.SHEREKAR,S.VALLURU,H.EHRENFELD, AUTHOR 2 J.C.SACCHETTINI,TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 4 13-SEP-23 4G2R 1 REMARK REVDAT 3 01-OCT-14 4G2R 1 JRNL REVDAT 2 13-AUG-14 4G2R 1 JRNL REVDAT 1 19-FEB-14 4G2R 0 JRNL AUTH M.C.REDDY,A.BREDA,J.B.BRUNING,M.SHEREKAR,S.VALLURU, JRNL AUTH 2 C.THURMAN,H.EHRENFELD,J.C.SACCHETTINI JRNL TITL STRUCTURE, ACTIVITY, AND INHIBITION OF THE JRNL TITL 2 CARBOXYLTRANSFERASE BETA-SUBUNIT OF ACETYL COENZYME A JRNL TITL 3 CARBOXYLASE (ACCD6) FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 58 6122 2014 JRNL REFN ISSN 0066-4804 JRNL PMID 25092705 JRNL DOI 10.1128/AAC.02574-13 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 54917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.9638 - 5.5010 1.00 3969 161 0.1680 0.1711 REMARK 3 2 5.5010 - 4.3667 1.00 3821 145 0.1214 0.1384 REMARK 3 3 4.3667 - 3.8149 1.00 3818 135 0.1290 0.1736 REMARK 3 4 3.8149 - 3.4661 1.00 3782 147 0.1458 0.1650 REMARK 3 5 3.4661 - 3.2177 1.00 3793 145 0.1577 0.2000 REMARK 3 6 3.2177 - 3.0280 1.00 3765 136 0.1736 0.2026 REMARK 3 7 3.0280 - 2.8764 1.00 3751 148 0.1833 0.2390 REMARK 3 8 2.8764 - 2.7512 1.00 3763 138 0.1863 0.2544 REMARK 3 9 2.7512 - 2.6452 1.00 3768 143 0.1877 0.2380 REMARK 3 10 2.6452 - 2.5540 1.00 3744 138 0.1978 0.2557 REMARK 3 11 2.5540 - 2.4741 1.00 3747 132 0.1998 0.2806 REMARK 3 12 2.4741 - 2.4034 1.00 3732 136 0.2268 0.2720 REMARK 3 13 2.4034 - 2.3401 1.00 3759 145 0.2544 0.3382 REMARK 3 14 2.3401 - 2.2830 1.00 3709 147 0.2663 0.3217 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 53.81 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.71440 REMARK 3 B22 (A**2) : 7.27960 REMARK 3 B33 (A**2) : -11.99400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6777 REMARK 3 ANGLE : 1.130 9235 REMARK 3 CHIRALITY : 0.083 1042 REMARK 3 PLANARITY : 0.005 1219 REMARK 3 DIHEDRAL : 14.578 2441 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -37.0146 -22.9992 40.3613 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.1730 REMARK 3 T33: 0.2275 T12: -0.0144 REMARK 3 T13: -0.0090 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 0.6170 L22: 0.5563 REMARK 3 L33: 1.0951 L12: 0.1024 REMARK 3 L13: -0.2526 L23: -0.4306 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: 0.0502 S13: 0.0583 REMARK 3 S21: 0.0625 S22: 0.0136 S23: 0.0595 REMARK 3 S31: -0.0680 S32: -0.0988 S33: -0.0185 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G2R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000073664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) LIQUID REMARK 200 N2 COOLED REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54953 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 58.944 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.50800 REMARK 200 R SYM FOR SHELL (I) : 0.50800 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FB8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M SODIUM FORMATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.89000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.12000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.85000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.89000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.12000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.85000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.89000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.12000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.85000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.89000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.12000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ILE A 3 REMARK 465 MET A 4 REMARK 465 ALA A 5 REMARK 465 PRO A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 GLY A 10 REMARK 465 GLU A 11 REMARK 465 SER A 12 REMARK 465 ASP A 163 REMARK 465 VAL A 164 REMARK 465 VAL A 165 REMARK 465 ARG A 166 REMARK 465 SER A 167 REMARK 465 VAL A 168 REMARK 465 THR A 169 REMARK 465 GLY A 170 REMARK 465 GLU A 171 REMARK 465 ASP A 172 REMARK 465 VAL A 173 REMARK 465 ASP A 174 REMARK 465 MET A 175 REMARK 465 GLU A 301 REMARK 465 ARG A 467 REMARK 465 HIS A 468 REMARK 465 LYS A 469 REMARK 465 ASN A 470 REMARK 465 ILE A 471 REMARK 465 PRO A 472 REMARK 465 LEU A 473 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ILE B 3 REMARK 465 MET B 4 REMARK 465 ALA B 5 REMARK 465 PRO B 6 REMARK 465 GLU B 7 REMARK 465 ALA B 8 REMARK 465 VAL B 9 REMARK 465 GLY B 10 REMARK 465 GLU B 11 REMARK 465 SER B 12 REMARK 465 LEU B 13 REMARK 465 ASP B 163 REMARK 465 VAL B 164 REMARK 465 VAL B 165 REMARK 465 ARG B 166 REMARK 465 SER B 167 REMARK 465 VAL B 168 REMARK 465 THR B 169 REMARK 465 GLY B 170 REMARK 465 GLU B 171 REMARK 465 ASP B 172 REMARK 465 VAL B 173 REMARK 465 ASP B 174 REMARK 465 ARG B 467 REMARK 465 HIS B 468 REMARK 465 LYS B 469 REMARK 465 ASN B 470 REMARK 465 ILE B 471 REMARK 465 PRO B 472 REMARK 465 LEU B 473 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 13 CG CD1 CD2 REMARK 470 SER A 23 OG REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 THR A 160 OG1 CG2 REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 THR A 183 OG1 CG2 REMARK 470 HIS A 184 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 VAL A 330 CG1 CG2 REMARK 470 ASP A 331 CG OD1 OD2 REMARK 470 GLU A 411 CG CD OE1 OE2 REMARK 470 GLU A 413 CG CD OE1 OE2 REMARK 470 ARG A 414 CZ NH1 NH2 REMARK 470 GLU A 415 CG CD OE1 OE2 REMARK 470 ASP B 28 CG OD1 OD2 REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 ASP B 331 CG OD1 OD2 REMARK 470 GLN B 332 CG CD OE1 NE2 REMARK 470 GLU B 333 CG CD OE1 OE2 REMARK 470 LYS B 403 CE NZ REMARK 470 LYS B 404 CE NZ REMARK 470 GLU B 411 CG CD OE1 OE2 REMARK 470 HIS B 412 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 415 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 188 O HOH B 894 2.03 REMARK 500 O HOH A 670 O HOH A 800 2.05 REMARK 500 OG SER A 188 O HOH A 929 2.06 REMARK 500 NH1 ARG A 305 O HOH A 925 2.07 REMARK 500 O HOH A 903 O HOH B 700 2.08 REMARK 500 O HOH A 629 O HOH A 651 2.10 REMARK 500 O HOH A 909 O HOH A 935 2.10 REMARK 500 O HOH B 604 O HOH B 841 2.11 REMARK 500 O HOH A 757 O HOH A 922 2.14 REMARK 500 O HOH A 910 O HOH B 648 2.14 REMARK 500 O HOH A 621 O HOH A 851 2.15 REMARK 500 NZ LYS A 343 O HOH A 942 2.15 REMARK 500 OE1 GLU A 333 O HOH A 702 2.15 REMARK 500 O HOH B 694 O HOH B 882 2.16 REMARK 500 OD1 ASP B 203 O HOH B 860 2.16 REMARK 500 O HOH B 735 O HOH B 779 2.16 REMARK 500 O PRO B 181 O HOH B 893 2.17 REMARK 500 O SER B 238 O HOH B 814 2.17 REMARK 500 O HOH B 794 O HOH B 840 2.18 REMARK 500 O HOH A 754 O HOH A 917 2.18 REMARK 500 O HOH B 742 O HOH B 785 2.19 REMARK 500 O HOH B 608 O HOH B 895 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -155.39 -139.24 REMARK 500 HIS A 95 93.25 -160.45 REMARK 500 HIS A 184 -58.82 -152.71 REMARK 500 ASP A 255 58.66 -115.76 REMARK 500 ASP A 322 81.33 -150.03 REMARK 500 VAL A 330 -76.16 -44.86 REMARK 500 ASP A 331 46.81 -89.02 REMARK 500 ARG A 361 -71.13 -124.65 REMARK 500 ARG A 465 146.74 81.98 REMARK 500 HIS B 184 -64.59 -127.48 REMARK 500 ASP B 322 77.76 -152.11 REMARK 500 VAL B 330 -77.93 -68.21 REMARK 500 ARG B 361 -74.91 -120.69 REMARK 500 ARG B 465 145.42 157.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 329 VAL B 330 -148.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H1L A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H1L A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H1L B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H1L B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FB8 RELATED DB: PDB REMARK 900 APO STRUCTURE OF ENZYME REMARK 900 RELATED ID: TB-RV2247 RELATED DB: TARGETTRACK DBREF 4G2R A 1 473 UNP P63407 PCC6_MYCTU 1 473 DBREF 4G2R B 1 473 UNP P63407 PCC6_MYCTU 1 473 SEQRES 1 A 473 MET THR ILE MET ALA PRO GLU ALA VAL GLY GLU SER LEU SEQRES 2 A 473 ASP PRO ARG ASP PRO LEU LEU ARG LEU SER ASN PHE PHE SEQRES 3 A 473 ASP ASP GLY SER VAL GLU LEU LEU HIS GLU ARG ASP ARG SEQRES 4 A 473 SER GLY VAL LEU ALA ALA ALA GLY THR VAL ASN GLY VAL SEQRES 5 A 473 ARG THR ILE ALA PHE CYS THR ASP GLY THR VAL MET GLY SEQRES 6 A 473 GLY ALA MET GLY VAL GLU GLY CYS THR HIS ILE VAL ASN SEQRES 7 A 473 ALA TYR ASP THR ALA ILE GLU ASP GLN SER PRO ILE VAL SEQRES 8 A 473 GLY ILE TRP HIS SER GLY GLY ALA ARG LEU ALA GLU GLY SEQRES 9 A 473 VAL ARG ALA LEU HIS ALA VAL GLY GLN VAL PHE GLU ALA SEQRES 10 A 473 MET ILE ARG ALA SER GLY TYR ILE PRO GLN ILE SER VAL SEQRES 11 A 473 VAL VAL GLY PHE ALA ALA GLY GLY ALA ALA TYR GLY PRO SEQRES 12 A 473 ALA LEU THR ASP VAL VAL VAL MET ALA PRO GLU SER ARG SEQRES 13 A 473 VAL PHE VAL THR GLY PRO ASP VAL VAL ARG SER VAL THR SEQRES 14 A 473 GLY GLU ASP VAL ASP MET ALA SER LEU GLY GLY PRO GLU SEQRES 15 A 473 THR HIS HIS LYS LYS SER GLY VAL CYS HIS ILE VAL ALA SEQRES 16 A 473 ASP ASP GLU LEU ASP ALA TYR ASP ARG GLY ARG ARG LEU SEQRES 17 A 473 VAL GLY LEU PHE CYS GLN GLN GLY HIS PHE ASP ARG SER SEQRES 18 A 473 LYS ALA GLU ALA GLY ASP THR ASP ILE HIS ALA LEU LEU SEQRES 19 A 473 PRO GLU SER SER ARG ARG ALA TYR ASP VAL ARG PRO ILE SEQRES 20 A 473 VAL THR ALA ILE LEU ASP ALA ASP THR PRO PHE ASP GLU SEQRES 21 A 473 PHE GLN ALA ASN TRP ALA PRO SER MET VAL VAL GLY LEU SEQRES 22 A 473 GLY ARG LEU SER GLY ARG THR VAL GLY VAL LEU ALA ASN SEQRES 23 A 473 ASN PRO LEU ARG LEU GLY GLY CYS LEU ASN SER GLU SER SEQRES 24 A 473 ALA GLU LYS ALA ALA ARG PHE VAL ARG LEU CYS ASP ALA SEQRES 25 A 473 PHE GLY ILE PRO LEU VAL VAL VAL VAL ASP VAL PRO GLY SEQRES 26 A 473 TYR LEU PRO GLY VAL ASP GLN GLU TRP GLY GLY VAL VAL SEQRES 27 A 473 ARG ARG GLY ALA LYS LEU LEU HIS ALA PHE GLY GLU CYS SEQRES 28 A 473 THR VAL PRO ARG VAL THR LEU VAL THR ARG LYS THR TYR SEQRES 29 A 473 GLY GLY ALA TYR ILE ALA MET ASN SER ARG SER LEU ASN SEQRES 30 A 473 ALA THR LYS VAL PHE ALA TRP PRO ASP ALA GLU VAL ALA SEQRES 31 A 473 VAL MET GLY ALA LYS ALA ALA VAL GLY ILE LEU HIS LYS SEQRES 32 A 473 LYS LYS LEU ALA ALA ALA PRO GLU HIS GLU ARG GLU ALA SEQRES 33 A 473 LEU HIS ASP GLN LEU ALA ALA GLU HIS GLU ARG ILE ALA SEQRES 34 A 473 GLY GLY VAL ASP SER ALA LEU ASP ILE GLY VAL VAL ASP SEQRES 35 A 473 GLU LYS ILE ASP PRO ALA HIS THR ARG SER LYS LEU THR SEQRES 36 A 473 GLU ALA LEU ALA GLN ALA PRO ALA ARG ARG GLY ARG HIS SEQRES 37 A 473 LYS ASN ILE PRO LEU SEQRES 1 B 473 MET THR ILE MET ALA PRO GLU ALA VAL GLY GLU SER LEU SEQRES 2 B 473 ASP PRO ARG ASP PRO LEU LEU ARG LEU SER ASN PHE PHE SEQRES 3 B 473 ASP ASP GLY SER VAL GLU LEU LEU HIS GLU ARG ASP ARG SEQRES 4 B 473 SER GLY VAL LEU ALA ALA ALA GLY THR VAL ASN GLY VAL SEQRES 5 B 473 ARG THR ILE ALA PHE CYS THR ASP GLY THR VAL MET GLY SEQRES 6 B 473 GLY ALA MET GLY VAL GLU GLY CYS THR HIS ILE VAL ASN SEQRES 7 B 473 ALA TYR ASP THR ALA ILE GLU ASP GLN SER PRO ILE VAL SEQRES 8 B 473 GLY ILE TRP HIS SER GLY GLY ALA ARG LEU ALA GLU GLY SEQRES 9 B 473 VAL ARG ALA LEU HIS ALA VAL GLY GLN VAL PHE GLU ALA SEQRES 10 B 473 MET ILE ARG ALA SER GLY TYR ILE PRO GLN ILE SER VAL SEQRES 11 B 473 VAL VAL GLY PHE ALA ALA GLY GLY ALA ALA TYR GLY PRO SEQRES 12 B 473 ALA LEU THR ASP VAL VAL VAL MET ALA PRO GLU SER ARG SEQRES 13 B 473 VAL PHE VAL THR GLY PRO ASP VAL VAL ARG SER VAL THR SEQRES 14 B 473 GLY GLU ASP VAL ASP MET ALA SER LEU GLY GLY PRO GLU SEQRES 15 B 473 THR HIS HIS LYS LYS SER GLY VAL CYS HIS ILE VAL ALA SEQRES 16 B 473 ASP ASP GLU LEU ASP ALA TYR ASP ARG GLY ARG ARG LEU SEQRES 17 B 473 VAL GLY LEU PHE CYS GLN GLN GLY HIS PHE ASP ARG SER SEQRES 18 B 473 LYS ALA GLU ALA GLY ASP THR ASP ILE HIS ALA LEU LEU SEQRES 19 B 473 PRO GLU SER SER ARG ARG ALA TYR ASP VAL ARG PRO ILE SEQRES 20 B 473 VAL THR ALA ILE LEU ASP ALA ASP THR PRO PHE ASP GLU SEQRES 21 B 473 PHE GLN ALA ASN TRP ALA PRO SER MET VAL VAL GLY LEU SEQRES 22 B 473 GLY ARG LEU SER GLY ARG THR VAL GLY VAL LEU ALA ASN SEQRES 23 B 473 ASN PRO LEU ARG LEU GLY GLY CYS LEU ASN SER GLU SER SEQRES 24 B 473 ALA GLU LYS ALA ALA ARG PHE VAL ARG LEU CYS ASP ALA SEQRES 25 B 473 PHE GLY ILE PRO LEU VAL VAL VAL VAL ASP VAL PRO GLY SEQRES 26 B 473 TYR LEU PRO GLY VAL ASP GLN GLU TRP GLY GLY VAL VAL SEQRES 27 B 473 ARG ARG GLY ALA LYS LEU LEU HIS ALA PHE GLY GLU CYS SEQRES 28 B 473 THR VAL PRO ARG VAL THR LEU VAL THR ARG LYS THR TYR SEQRES 29 B 473 GLY GLY ALA TYR ILE ALA MET ASN SER ARG SER LEU ASN SEQRES 30 B 473 ALA THR LYS VAL PHE ALA TRP PRO ASP ALA GLU VAL ALA SEQRES 31 B 473 VAL MET GLY ALA LYS ALA ALA VAL GLY ILE LEU HIS LYS SEQRES 32 B 473 LYS LYS LEU ALA ALA ALA PRO GLU HIS GLU ARG GLU ALA SEQRES 33 B 473 LEU HIS ASP GLN LEU ALA ALA GLU HIS GLU ARG ILE ALA SEQRES 34 B 473 GLY GLY VAL ASP SER ALA LEU ASP ILE GLY VAL VAL ASP SEQRES 35 B 473 GLU LYS ILE ASP PRO ALA HIS THR ARG SER LYS LEU THR SEQRES 36 B 473 GLU ALA LEU ALA GLN ALA PRO ALA ARG ARG GLY ARG HIS SEQRES 37 B 473 LYS ASN ILE PRO LEU HET H1L A 501 24 HET H1L A 502 24 HET H1L B 501 24 HET H1L B 502 24 HETNAM H1L (2R)-2-(4-{[3-CHLORO-5-(TRIFLUOROMETHYL)PYRIDIN-2- HETNAM 2 H1L YL]OXY}PHENOXY)PROPANOIC ACID HETSYN H1L HALOXYFOP INHIBITOR, R ENANTIOMER FORMUL 3 H1L 4(C15 H11 CL F3 N O4) FORMUL 7 HOH *691(H2 O) HELIX 1 1 LEU A 13 ARG A 16 5 4 HELIX 2 2 ASP A 17 PHE A 26 1 10 HELIX 3 3 VAL A 63 ALA A 67 5 5 HELIX 4 4 GLY A 69 GLN A 87 1 19 HELIX 5 5 ARG A 100 GLU A 103 5 4 HELIX 6 6 GLY A 104 SER A 122 1 19 HELIX 7 7 GLY A 137 LEU A 145 1 9 HELIX 8 8 HIS A 184 SER A 188 5 5 HELIX 9 9 ASP A 197 GLN A 214 1 18 HELIX 10 10 ASP A 219 GLY A 226 1 8 HELIX 11 11 ASP A 229 LEU A 234 5 6 HELIX 12 12 VAL A 244 LEU A 252 1 9 HELIX 13 13 ARG A 290 CYS A 294 5 5 HELIX 14 14 SER A 299 ALA A 300 5 2 HELIX 15 15 LYS A 302 LYS A 302 5 1 HELIX 16 16 ALA A 303 GLY A 314 1 12 HELIX 17 17 TRP A 334 CYS A 351 1 18 HELIX 18 18 GLY A 365 MET A 371 1 7 HELIX 19 19 SER A 373 ASN A 377 5 5 HELIX 20 20 GLY A 393 HIS A 402 1 10 HELIX 21 21 HIS A 402 ALA A 409 1 8 HELIX 22 22 PRO A 410 ALA A 429 1 20 HELIX 23 23 GLY A 431 GLY A 439 1 9 HELIX 24 24 ASP A 446 ALA A 448 5 3 HELIX 25 25 HIS A 449 ALA A 461 1 13 HELIX 26 26 ASP B 17 PHE B 26 1 10 HELIX 27 27 VAL B 63 ALA B 67 5 5 HELIX 28 28 GLY B 69 GLN B 87 1 19 HELIX 29 29 ARG B 100 GLU B 103 5 4 HELIX 30 30 GLY B 104 SER B 122 1 19 HELIX 31 31 GLY B 137 LEU B 145 1 9 HELIX 32 32 HIS B 184 SER B 188 5 5 HELIX 33 33 ASP B 197 GLN B 214 1 18 HELIX 34 34 ASP B 219 GLY B 226 1 8 HELIX 35 35 ASP B 229 LEU B 234 5 6 HELIX 36 36 VAL B 244 LEU B 252 1 9 HELIX 37 37 ARG B 290 CYS B 294 5 5 HELIX 38 38 SER B 297 PHE B 313 1 17 HELIX 39 39 TRP B 334 CYS B 351 1 18 HELIX 40 40 GLY B 365 MET B 371 1 7 HELIX 41 41 SER B 373 ASN B 377 5 5 HELIX 42 42 GLY B 393 HIS B 402 1 10 HELIX 43 43 HIS B 402 ALA B 409 1 8 HELIX 44 44 PRO B 410 ALA B 429 1 20 HELIX 45 45 GLY B 431 GLY B 439 1 9 HELIX 46 46 ASP B 446 ALA B 448 5 3 HELIX 47 47 HIS B 449 ALA B 461 1 13 SHEET 1 A 7 GLU A 32 LEU A 33 0 SHEET 2 A 7 VAL A 42 VAL A 49 -1 O ALA A 46 N GLU A 32 SHEET 3 A 7 VAL A 52 THR A 59 -1 O THR A 54 N GLY A 47 SHEET 4 A 7 ILE A 90 SER A 96 1 O ILE A 93 N PHE A 57 SHEET 5 A 7 GLN A 127 ALA A 136 1 O VAL A 130 N GLY A 92 SHEET 6 A 7 ARG A 156 VAL A 159 1 O ARG A 156 N ALA A 135 SHEET 7 A 7 SER A 177 GLY A 179 -1 O GLY A 179 N VAL A 157 SHEET 1 B 7 GLU A 32 LEU A 33 0 SHEET 2 B 7 VAL A 42 VAL A 49 -1 O ALA A 46 N GLU A 32 SHEET 3 B 7 VAL A 52 THR A 59 -1 O THR A 54 N GLY A 47 SHEET 4 B 7 ILE A 90 SER A 96 1 O ILE A 93 N PHE A 57 SHEET 5 B 7 GLN A 127 ALA A 136 1 O VAL A 130 N GLY A 92 SHEET 6 B 7 VAL A 148 MET A 151 1 O VAL A 150 N VAL A 131 SHEET 7 B 7 ILE A 193 VAL A 194 1 O ILE A 193 N MET A 151 SHEET 1 C 6 ASP A 259 PHE A 261 0 SHEET 2 C 6 MET A 269 LEU A 276 -1 O LEU A 273 N ASP A 259 SHEET 3 C 6 ARG A 279 ASN A 286 -1 O ALA A 285 N VAL A 270 SHEET 4 C 6 LEU A 317 VAL A 323 1 O VAL A 320 N LEU A 284 SHEET 5 C 6 ARG A 355 TYR A 364 1 O LEU A 358 N VAL A 319 SHEET 6 C 6 GLU A 388 ALA A 390 1 O GLU A 388 N ARG A 361 SHEET 1 D 7 ASP A 259 PHE A 261 0 SHEET 2 D 7 MET A 269 LEU A 276 -1 O LEU A 273 N ASP A 259 SHEET 3 D 7 ARG A 279 ASN A 286 -1 O ALA A 285 N VAL A 270 SHEET 4 D 7 LEU A 317 VAL A 323 1 O VAL A 320 N LEU A 284 SHEET 5 D 7 ARG A 355 TYR A 364 1 O LEU A 358 N VAL A 319 SHEET 6 D 7 LYS A 380 ALA A 383 1 O PHE A 382 N THR A 357 SHEET 7 D 7 GLU A 443 LYS A 444 1 O GLU A 443 N ALA A 383 SHEET 1 E 7 GLU B 32 LEU B 33 0 SHEET 2 E 7 VAL B 42 VAL B 49 -1 O ALA B 46 N GLU B 32 SHEET 3 E 7 VAL B 52 THR B 59 -1 O THR B 54 N GLY B 47 SHEET 4 E 7 ILE B 90 SER B 96 1 O ILE B 93 N PHE B 57 SHEET 5 E 7 GLN B 127 ALA B 136 1 O VAL B 130 N GLY B 92 SHEET 6 E 7 ARG B 156 THR B 160 1 O ARG B 156 N ALA B 135 SHEET 7 E 7 ALA B 176 GLY B 179 -1 O GLY B 179 N VAL B 157 SHEET 1 F 7 GLU B 32 LEU B 33 0 SHEET 2 F 7 VAL B 42 VAL B 49 -1 O ALA B 46 N GLU B 32 SHEET 3 F 7 VAL B 52 THR B 59 -1 O THR B 54 N GLY B 47 SHEET 4 F 7 ILE B 90 SER B 96 1 O ILE B 93 N PHE B 57 SHEET 5 F 7 GLN B 127 ALA B 136 1 O VAL B 130 N GLY B 92 SHEET 6 F 7 VAL B 148 MET B 151 1 O VAL B 150 N SER B 129 SHEET 7 F 7 ILE B 193 VAL B 194 1 O ILE B 193 N MET B 151 SHEET 1 G 6 ASP B 259 PHE B 261 0 SHEET 2 G 6 MET B 269 LEU B 276 -1 O LEU B 273 N ASP B 259 SHEET 3 G 6 ARG B 279 ASN B 286 -1 O ALA B 285 N VAL B 270 SHEET 4 G 6 LEU B 317 VAL B 323 1 O VAL B 318 N GLY B 282 SHEET 5 G 6 ARG B 355 TYR B 364 1 O LEU B 358 N VAL B 319 SHEET 6 G 6 GLU B 388 ALA B 390 1 O GLU B 388 N ARG B 361 SHEET 1 H 7 ASP B 259 PHE B 261 0 SHEET 2 H 7 MET B 269 LEU B 276 -1 O LEU B 273 N ASP B 259 SHEET 3 H 7 ARG B 279 ASN B 286 -1 O ALA B 285 N VAL B 270 SHEET 4 H 7 LEU B 317 VAL B 323 1 O VAL B 318 N GLY B 282 SHEET 5 H 7 ARG B 355 TYR B 364 1 O LEU B 358 N VAL B 319 SHEET 6 H 7 LYS B 380 ALA B 383 1 O PHE B 382 N THR B 357 SHEET 7 H 7 GLU B 443 LYS B 444 1 O GLU B 443 N ALA B 383 SHEET 1 I 2 LEU B 295 ASN B 296 0 SHEET 2 I 2 TYR B 326 LEU B 327 1 O LEU B 327 N LEU B 295 CISPEP 1 VAL B 330 ASP B 331 0 4.49 SITE 1 AC1 13 GLY A 98 ALA A 99 LEU A 108 GLY A 137 SITE 2 AC1 13 GLY A 138 TYR A 141 HOH A 940 LEU B 295 SITE 3 AC1 13 TYR B 326 VAL B 337 GLY B 341 GLY B 366 SITE 4 AC1 13 ALA B 370 SITE 1 AC2 15 VAL A 131 ALA A 140 PRO A 143 VAL A 149 SITE 2 AC2 15 MET A 151 VAL A 157 HIS A 184 HIS A 185 SITE 3 AC2 15 SER A 188 HOH A 928 GLN B 332 GLU B 333 SITE 4 AC2 15 TRP B 334 GLY B 335 VAL B 338 SITE 1 AC3 15 LEU A 295 TYR A 326 VAL A 337 GLY A 341 SITE 2 AC3 15 GLY A 366 ALA A 370 GLY B 98 ALA B 99 SITE 3 AC3 15 LEU B 108 PHE B 115 GLY B 137 GLY B 138 SITE 4 AC3 15 TYR B 141 HOH B 777 HOH B 857 SITE 1 AC4 16 GLN A 332 GLU A 333 TRP A 334 VAL A 338 SITE 2 AC4 16 VAL B 131 ALA B 140 PRO B 143 VAL B 149 SITE 3 AC4 16 MET B 151 VAL B 157 VAL B 159 SER B 177 SITE 4 AC4 16 HIS B 184 HIS B 185 SER B 188 HOH B 941 CRYST1 117.780 126.240 161.700 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008490 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006184 0.00000