HEADER HYDROLASE/TRANSFERASE 15-JUL-12 4G3X TITLE CRYSTAL STRUCTURE OF Q61L H-RAS-GPPNHP BOUND TO THE RBD OF RAF KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1, HA-RAS, TRANSFORMING PROTEIN P21, C-H-RAS, P21RAS, COMPND 5 GTPASE HRAS, N-TERMINALLY PROCESSED; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 55-131; COMPND 12 SYNONYM: PROTO-ONCOGENE C-RAF, CRAF, RAF-1; COMPND 13 EC: 2.7.11.1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: RAF1, RAF; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET302/NT-HIS KEYWDS H-RAS, RAS, RAF KINASE, RAF, GTPASE, ALLOSTERIC REGULATION, INTRINSIC KEYWDS 2 HYDROLYSIS, PROTEIN-PROTEIN INTERACTION, KINASE, GTP BINDING, KEYWDS 3 HYDROLASE-TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.K.FETICS,B.M.KEARNEY,G.BUHRMAN,C.MATTOS REVDAT 5 13-SEP-23 4G3X 1 REMARK SEQADV LINK REVDAT 4 15-NOV-17 4G3X 1 REMARK REVDAT 3 18-MAR-15 4G3X 1 REMARK REVDAT 2 11-MAR-15 4G3X 1 JRNL REVDAT 1 17-JUL-13 4G3X 0 JRNL AUTH S.K.FETICS,H.GUTERRES,B.M.KEARNEY,G.BUHRMAN,B.MA,R.NUSSINOV, JRNL AUTH 2 C.MATTOS JRNL TITL ALLOSTERIC EFFECTS OF THE ONCOGENIC RASQ61L MUTANT ON JRNL TITL 2 RAF-RBD. JRNL REF STRUCTURE V. 23 505 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25684575 JRNL DOI 10.1016/J.STR.2014.12.017 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.6 REMARK 3 NUMBER OF REFLECTIONS : 6339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.275 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.540 REMARK 3 FREE R VALUE TEST SET COUNT : 668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6145 - 5.5873 0.90 1374 156 0.2415 0.2420 REMARK 3 2 5.5873 - 4.4384 0.87 1264 142 0.2350 0.2611 REMARK 3 3 4.4384 - 3.8784 0.82 1180 135 0.2791 0.3598 REMARK 3 4 3.8784 - 3.5242 0.76 1069 123 0.3146 0.3780 REMARK 3 5 3.5242 - 3.2719 0.55 788 91 0.3665 0.5009 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06050 REMARK 3 B22 (A**2) : 0.06050 REMARK 3 B33 (A**2) : -0.12110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1934 REMARK 3 ANGLE : 0.597 2627 REMARK 3 CHIRALITY : 0.041 302 REMARK 3 PLANARITY : 0.002 335 REMARK 3 DIHEDRAL : 12.773 705 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.9609 5.2341 -15.3303 REMARK 3 T TENSOR REMARK 3 T11: 0.4787 T22: 0.2160 REMARK 3 T33: 0.5645 T12: 0.2944 REMARK 3 T13: -0.1973 T23: 0.2435 REMARK 3 L TENSOR REMARK 3 L11: 0.2780 L22: 0.0182 REMARK 3 L33: 0.0208 L12: 0.0704 REMARK 3 L13: -0.0822 L23: -0.0210 REMARK 3 S TENSOR REMARK 3 S11: 0.0876 S12: 0.0220 S13: 0.0643 REMARK 3 S21: -0.0069 S22: 0.0478 S23: 0.0326 REMARK 3 S31: -0.0441 S32: 0.1111 S33: 0.4164 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9185 -7.5102 -18.0347 REMARK 3 T TENSOR REMARK 3 T11: 0.5525 T22: -0.3702 REMARK 3 T33: 0.6177 T12: 0.2983 REMARK 3 T13: -0.1602 T23: -0.1060 REMARK 3 L TENSOR REMARK 3 L11: 0.0275 L22: 0.1480 REMARK 3 L33: 0.0950 L12: 0.0218 REMARK 3 L13: -0.0485 L23: 0.0242 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: 0.0042 S13: -0.0545 REMARK 3 S21: 0.0092 S22: 0.1157 S23: -0.0397 REMARK 3 S31: -0.0228 S32: -0.0671 S33: 0.1859 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9751 8.1763 -14.2374 REMARK 3 T TENSOR REMARK 3 T11: 0.5234 T22: -0.4441 REMARK 3 T33: 0.8821 T12: 0.2051 REMARK 3 T13: 0.0684 T23: -0.2161 REMARK 3 L TENSOR REMARK 3 L11: 0.2565 L22: 0.0973 REMARK 3 L33: 0.0643 L12: -0.0763 REMARK 3 L13: -0.0082 L23: 0.0671 REMARK 3 S TENSOR REMARK 3 S11: 0.1729 S12: 0.2012 S13: 0.1054 REMARK 3 S21: 0.0691 S22: 0.0686 S23: 0.0445 REMARK 3 S31: -0.0860 S32: -0.0250 S33: 0.2430 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.5871 -6.6383 -23.6293 REMARK 3 T TENSOR REMARK 3 T11: 0.4591 T22: 0.4224 REMARK 3 T33: 0.6911 T12: 0.2765 REMARK 3 T13: -0.0521 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 0.0154 L22: 0.0426 REMARK 3 L33: 0.0905 L12: -0.0227 REMARK 3 L13: -0.0055 L23: 0.0004 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: 0.0042 S13: -0.0224 REMARK 3 S21: 0.0499 S22: 0.0006 S23: -0.0048 REMARK 3 S31: -0.0140 S32: 0.0040 S33: -0.1605 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.1693 -0.7228 -23.1230 REMARK 3 T TENSOR REMARK 3 T11: 0.3871 T22: 0.6284 REMARK 3 T33: 0.6988 T12: 0.3261 REMARK 3 T13: -0.0646 T23: 0.0663 REMARK 3 L TENSOR REMARK 3 L11: 0.0657 L22: 0.0331 REMARK 3 L33: 0.0183 L12: 0.0300 REMARK 3 L13: 0.0183 L23: -0.0076 REMARK 3 S TENSOR REMARK 3 S11: 0.0320 S12: -0.1150 S13: -0.0738 REMARK 3 S21: 0.0516 S22: 0.0018 S23: 0.0418 REMARK 3 S31: 0.0149 S32: -0.0890 S33: -0.0211 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.3304 -11.8697 -13.7669 REMARK 3 T TENSOR REMARK 3 T11: 0.0199 T22: 0.3307 REMARK 3 T33: 0.7266 T12: 0.2260 REMARK 3 T13: -0.0826 T23: 0.1958 REMARK 3 L TENSOR REMARK 3 L11: 0.0162 L22: 0.0241 REMARK 3 L33: 0.0167 L12: -0.0183 REMARK 3 L13: -0.0030 L23: -0.0037 REMARK 3 S TENSOR REMARK 3 S11: 0.0474 S12: 0.0287 S13: -0.0421 REMARK 3 S21: -0.0075 S22: 0.0251 S23: -0.0166 REMARK 3 S31: -0.0079 S32: -0.0157 S33: 0.1023 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.4611 -11.3414 -6.7729 REMARK 3 T TENSOR REMARK 3 T11: 0.0094 T22: 0.0498 REMARK 3 T33: 0.6700 T12: 0.1149 REMARK 3 T13: -0.0238 T23: 0.0742 REMARK 3 L TENSOR REMARK 3 L11: 0.0684 L22: 0.1998 REMARK 3 L33: 0.3317 L12: -0.0793 REMARK 3 L13: -0.0140 L23: 0.0360 REMARK 3 S TENSOR REMARK 3 S11: -0.0701 S12: 0.0468 S13: 0.0154 REMARK 3 S21: -0.1119 S22: -0.2191 S23: -0.0178 REMARK 3 S31: 0.1126 S32: 0.0423 S33: -0.2429 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.0744 -10.2290 -3.4569 REMARK 3 T TENSOR REMARK 3 T11: 0.3427 T22: -0.0949 REMARK 3 T33: 0.7391 T12: 0.3591 REMARK 3 T13: -0.1940 T23: -0.2363 REMARK 3 L TENSOR REMARK 3 L11: 0.0337 L22: 0.0641 REMARK 3 L33: 0.0430 L12: -0.0331 REMARK 3 L13: -0.0397 L23: 0.0514 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: 0.0087 S13: -0.0404 REMARK 3 S21: 0.0980 S22: -0.0394 S23: 0.0609 REMARK 3 S31: 0.1323 S32: -0.0278 S33: -0.1236 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.8495 3.2895 -5.8022 REMARK 3 T TENSOR REMARK 3 T11: 0.5605 T22: 0.0664 REMARK 3 T33: 0.6402 T12: -0.2043 REMARK 3 T13: -0.1119 T23: 0.0828 REMARK 3 L TENSOR REMARK 3 L11: 0.0152 L22: 0.0071 REMARK 3 L33: 0.0004 L12: -0.0097 REMARK 3 L13: 0.0078 L23: -0.0031 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: -0.0186 S13: 0.0330 REMARK 3 S21: -0.0746 S22: 0.0135 S23: -0.0179 REMARK 3 S31: -0.0065 S32: 0.0134 S33: -0.0033 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3657 -1.6029 -34.5527 REMARK 3 T TENSOR REMARK 3 T11: 0.2725 T22: 0.3925 REMARK 3 T33: 0.2832 T12: -0.1109 REMARK 3 T13: 0.1424 T23: 0.0655 REMARK 3 L TENSOR REMARK 3 L11: 0.0166 L22: 0.0573 REMARK 3 L33: 0.0052 L12: -0.0267 REMARK 3 L13: 0.0061 L23: -0.0021 REMARK 3 S TENSOR REMARK 3 S11: -0.0390 S12: 0.0286 S13: -0.0292 REMARK 3 S21: -0.0323 S22: -0.0484 S23: -0.0509 REMARK 3 S31: 0.0241 S32: -0.0221 S33: -0.0886 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0025 3.4240 -28.1685 REMARK 3 T TENSOR REMARK 3 T11: 0.4249 T22: 0.2151 REMARK 3 T33: 0.5576 T12: 0.3074 REMARK 3 T13: 0.1743 T23: 0.2796 REMARK 3 L TENSOR REMARK 3 L11: 0.0110 L22: 0.2646 REMARK 3 L33: 0.0870 L12: 0.0308 REMARK 3 L13: 0.0231 L23: 0.1498 REMARK 3 S TENSOR REMARK 3 S11: -0.1288 S12: -0.0503 S13: 0.0001 REMARK 3 S21: 0.0150 S22: 0.0002 S23: -0.0161 REMARK 3 S31: -0.0054 S32: 0.0017 S33: -0.0792 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3499 -7.4536 -36.6921 REMARK 3 T TENSOR REMARK 3 T11: 1.0080 T22: 0.7632 REMARK 3 T33: 1.0069 T12: 0.1110 REMARK 3 T13: 0.3265 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.0043 L22: 0.0014 REMARK 3 L33: 0.0013 L12: 0.0031 REMARK 3 L13: 0.0004 L23: 0.0004 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: -0.0213 S13: 0.0070 REMARK 3 S21: -0.0108 S22: 0.0229 S23: 0.0210 REMARK 3 S31: 0.0674 S32: 0.0136 S33: 0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 82 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2196 -1.5425 -28.3773 REMARK 3 T TENSOR REMARK 3 T11: 0.4909 T22: 0.6502 REMARK 3 T33: 0.8540 T12: 0.2272 REMARK 3 T13: -0.0533 T23: 0.3678 REMARK 3 L TENSOR REMARK 3 L11: 0.0166 L22: 0.0306 REMARK 3 L33: 0.0249 L12: 0.0224 REMARK 3 L13: 0.0203 L23: 0.0274 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: -0.0075 S13: -0.0051 REMARK 3 S21: 0.0208 S22: -0.0175 S23: -0.0027 REMARK 3 S31: -0.0079 S32: -0.0106 S33: -0.0016 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0926 5.1077 -25.9304 REMARK 3 T TENSOR REMARK 3 T11: 1.1255 T22: 1.0920 REMARK 3 T33: 0.8744 T12: 0.5030 REMARK 3 T13: -0.2821 T23: 0.2517 REMARK 3 L TENSOR REMARK 3 L11: 0.0009 L22: 0.0021 REMARK 3 L33: 0.0002 L12: -0.0020 REMARK 3 L13: -0.0007 L23: 0.0007 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: -0.0527 S13: -0.0061 REMARK 3 S21: -0.0021 S22: -0.0386 S23: 0.0043 REMARK 3 S31: 0.0312 S32: -0.0422 S33: -0.0001 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8020 8.8881 -42.8417 REMARK 3 T TENSOR REMARK 3 T11: 0.5472 T22: 0.1056 REMARK 3 T33: 0.4984 T12: -0.1464 REMARK 3 T13: 0.2052 T23: -0.0392 REMARK 3 L TENSOR REMARK 3 L11: 0.0616 L22: 0.0587 REMARK 3 L33: 0.2168 L12: 0.0255 REMARK 3 L13: -0.0266 L23: -0.1101 REMARK 3 S TENSOR REMARK 3 S11: -0.0689 S12: 0.0116 S13: 0.0405 REMARK 3 S21: -0.0222 S22: -0.0328 S23: -0.0044 REMARK 3 S31: 0.0535 S32: 0.0721 S33: -0.0010 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 112 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8334 -1.2822 -41.7021 REMARK 3 T TENSOR REMARK 3 T11: 1.0058 T22: 0.8786 REMARK 3 T33: 0.7778 T12: -0.1092 REMARK 3 T13: -0.1525 T23: 0.1022 REMARK 3 L TENSOR REMARK 3 L11: 0.0033 L22: -0.0001 REMARK 3 L33: -0.0002 L12: -0.0021 REMARK 3 L13: -0.0035 L23: 0.0021 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: -0.0003 S13: 0.0118 REMARK 3 S21: -0.0530 S22: 0.0335 S23: 0.0766 REMARK 3 S31: 0.0536 S32: -0.0774 S33: 0.0000 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9926 6.6279 -36.1460 REMARK 3 T TENSOR REMARK 3 T11: 0.5508 T22: 0.2582 REMARK 3 T33: 0.6854 T12: 0.0942 REMARK 3 T13: -0.2201 T23: -0.1562 REMARK 3 L TENSOR REMARK 3 L11: 0.0284 L22: 0.0279 REMARK 3 L33: 0.0217 L12: 0.0284 REMARK 3 L13: -0.0153 L23: -0.0113 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.0032 S13: 0.0202 REMARK 3 S21: -0.0933 S22: 0.0104 S23: 0.0387 REMARK 3 S31: 0.0484 S32: -0.0206 S33: 0.0073 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G3X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6462 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 32.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB 3K8Y FOR CHAIN A AND PDB 1GUA FOR CHAIN B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 10 - 18 MG/ML, 50 MM REMARK 280 HEPES, PH 7.2, 50 MM NACL, 10MM MGCL2 5% GLYCEROL, 1MM DTE, 10 M REMARK 280 ZNCL2 RESERVOIR SOLUTION:200MM CALCIUM ACETATE, 100MM SODIUM REMARK 280 CACODYLATE PH 6.5, 18% PEG 8000. DROP: 3UL PROTEIN, 3UL REMARK 280 RESERVOIR , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K, PH REMARK 280 6.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 ASP A 105 CG OD1 OD2 REMARK 470 ASP A 132 CG OD1 OD2 REMARK 470 GLN A 150 CG CD OE1 NE2 REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 ASN B 71 CG OD1 ND2 REMARK 470 LEU B 78 CG CD1 CD2 REMARK 470 LYS B 84 CG CD CE NZ REMARK 470 LEU B 86 CG CD1 CD2 REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 GLN B 92 CG CD OE1 NE2 REMARK 470 GLU B 94 CG CD OE1 OE2 REMARK 470 LEU B 101 CG CD1 CD2 REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 LYS B 109 CG CD CE NZ REMARK 470 ARG B 111 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 113 CG OD1 OD2 REMARK 470 ASP B 117 CG OD1 OD2 REMARK 470 ASP B 129 CG OD1 OD2 REMARK 470 PHE B 130 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2A GNP A 201 O HOH A 307 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 14 -144.94 -73.66 REMARK 500 SER A 17 49.24 -84.12 REMARK 500 ALA A 18 -29.67 -156.23 REMARK 500 ASP A 30 -107.89 -76.66 REMARK 500 GLU A 31 103.27 10.33 REMARK 500 PRO A 34 99.42 -53.87 REMARK 500 ILE A 36 -53.24 -129.56 REMARK 500 GLU A 37 91.26 -161.59 REMARK 500 ASP A 47 60.27 61.58 REMARK 500 CYS A 51 -155.32 -109.14 REMARK 500 GLU A 62 46.47 -77.53 REMARK 500 ASP A 69 49.22 -81.55 REMARK 500 GLN A 70 -46.79 -135.45 REMARK 500 ASP A 105 -59.58 57.82 REMARK 500 PRO A 110 101.16 -59.11 REMARK 500 GLU A 126 -178.67 -69.11 REMARK 500 TYR A 157 -54.47 -121.46 REMARK 500 SER B 77 -137.68 -77.91 REMARK 500 MET B 83 -70.31 -74.99 REMARK 500 LEU B 86 -28.41 -145.90 REMARK 500 HIS B 103 46.41 -100.45 REMARK 500 LYS B 106 84.03 57.06 REMARK 500 ASN B 115 41.91 -90.29 REMARK 500 LEU B 121 33.92 -89.37 REMARK 500 GLU B 124 -156.44 -108.49 REMARK 500 GLU B 125 113.01 -162.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 135.4 REMARK 620 3 GNP A 201 O2G 139.4 70.0 REMARK 620 4 GNP A 201 O2B 68.0 147.7 78.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G0N RELATED DB: PDB DBREF 4G3X A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 4G3X B 55 131 UNP P04049 RAF1_HUMAN 55 131 SEQADV 4G3X LEU A 61 UNP P01112 GLN 61 ENGINEERED MUTATION SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY LEU GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 B 77 SER ASN THR ILE ARG VAL PHE LEU PRO ASN LYS GLN ARG SEQRES 2 B 77 THR VAL VAL ASN VAL ARG ASN GLY MET SER LEU HIS ASP SEQRES 3 B 77 CYS LEU MET LYS ALA LEU LYS VAL ARG GLY LEU GLN PRO SEQRES 4 B 77 GLU CYS CYS ALA VAL PHE ARG LEU LEU HIS GLU HIS LYS SEQRES 5 B 77 GLY LYS LYS ALA ARG LEU ASP TRP ASN THR ASP ALA ALA SEQRES 6 B 77 SER LEU ILE GLY GLU GLU LEU GLN VAL ASP PHE LEU HET GNP A 201 32 HET MG A 202 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 GNP C10 H17 N6 O13 P3 FORMUL 4 MG MG 2+ FORMUL 5 HOH *17(H2 O) HELIX 1 1 GLY A 15 THR A 20 1 6 HELIX 2 2 THR A 20 GLN A 25 1 6 HELIX 3 3 MET A 67 MET A 72 1 6 HELIX 4 4 THR A 87 ASP A 92 1 6 HELIX 5 5 ILE A 93 ASP A 105 1 13 HELIX 6 6 SER A 127 GLY A 138 1 12 HELIX 7 7 GLY A 151 ARG A 164 1 14 HELIX 8 8 LEU B 86 GLY B 90 5 5 HELIX 9 9 GLN B 92 CYS B 96 5 5 HELIX 10 10 ASP B 117 LEU B 121 5 5 SHEET 1 A 6 ASP A 38 TYR A 40 0 SHEET 2 A 6 LEU A 53 ASP A 57 -1 O ILE A 55 N TYR A 40 SHEET 3 A 6 TYR A 4 GLY A 10 1 N LEU A 6 O LEU A 56 SHEET 4 A 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 A 6 LEU A 113 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 A 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 B 5 GLN B 66 ASN B 71 0 SHEET 2 B 5 THR B 57 LEU B 62 -1 N VAL B 60 O THR B 68 SHEET 3 B 5 GLU B 124 GLN B 127 1 O GLU B 124 N ARG B 59 SHEET 4 B 5 PHE B 99 LEU B 101 -1 N PHE B 99 O GLN B 127 SHEET 5 B 5 LYS B 109 ARG B 111 -1 O ALA B 110 N ARG B 100 LINK OG SER A 17 MG MG A 202 1555 1555 1.99 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.07 LINK O2G GNP A 201 MG MG A 202 1555 1555 1.96 LINK O2B GNP A 201 MG MG A 202 1555 1555 2.43 CISPEP 1 SER B 55 ASN B 56 0 1.88 SITE 1 AC1 20 ALA A 11 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 20 LYS A 16 SER A 17 VAL A 29 ASP A 30 SITE 3 AC1 20 TYR A 32 THR A 35 GLY A 60 ASN A 116 SITE 4 AC1 20 LYS A 117 ASP A 119 LEU A 120 SER A 145 SITE 5 AC1 20 ALA A 146 LYS A 147 MG A 202 HOH A 307 SITE 1 AC2 4 SER A 17 THR A 35 ASP A 57 GNP A 201 CRYST1 91.400 91.400 93.110 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010941 0.006317 0.000000 0.00000 SCALE2 0.000000 0.012633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010740 0.00000