HEADER IMMUNE SYSTEM 15-JUL-12 4G3Y TITLE CRYSTAL STRUCTURE OF TNF-ALPHA IN COMPLEX WITH INFLIXIMAB FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: INFLIXIMAB FAB L; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: INFLIXIMAB FAB H; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TUMOR NECROSIS FACTOR; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: TUMOR NECROSIS FACTOR, SOLUBLE FORM; COMPND 13 SYNONYM: TNF-ALPHA; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: TNFA; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TNF, INFLIXIMAB, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.Y.LIANG,J.X.DAI,Y.J.GUO,Z.Y.LOU REVDAT 3 30-OCT-24 4G3Y 1 REMARK REVDAT 2 07-AUG-13 4G3Y 1 JRNL REVDAT 1 27-MAR-13 4G3Y 0 JRNL AUTH S.Y.LIANG,J.X.DAI,S.HOU,L.SU,D.ZHANG,H.GUO,S.HU,H.WANG, JRNL AUTH 2 Z.RAO,Y.J.GUO,Z.Y.LOU JRNL TITL STRUCTURAL BASIS FOR TREATING TUMOR NECROSIS FACTOR ALPHA JRNL TITL 2 (TNFALPHA)-ASSOCIATED DISEASES WITH THE THERAPEUTIC ANTIBODY JRNL TITL 3 INFLIXIMAB JRNL REF J.BIOL.CHEM. V. 288 13799 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23504311 JRNL DOI 10.1074/JBC.M112.433961 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.080 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 25400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.5356 - 5.3832 0.99 2828 143 0.1711 0.2087 REMARK 3 2 5.3832 - 4.2838 0.99 2808 141 0.1316 0.1656 REMARK 3 3 4.2838 - 3.7456 0.98 2779 161 0.1556 0.1925 REMARK 3 4 3.7456 - 3.4046 0.98 2787 135 0.1871 0.2389 REMARK 3 5 3.4046 - 3.1613 0.97 2719 147 0.2152 0.2614 REMARK 3 6 3.1613 - 2.9755 0.95 2725 161 0.2308 0.3108 REMARK 3 7 2.9755 - 2.8268 0.93 2627 146 0.2480 0.2942 REMARK 3 8 2.8268 - 2.7040 0.88 2483 122 0.2452 0.3081 REMARK 3 9 2.7040 - 2.6001 0.82 2366 122 0.2485 0.3149 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 31.58 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.62390 REMARK 3 B22 (A**2) : -1.62390 REMARK 3 B33 (A**2) : 3.24780 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4576 REMARK 3 ANGLE : 1.223 6214 REMARK 3 CHIRALITY : 0.079 695 REMARK 3 PLANARITY : 0.005 800 REMARK 3 DIHEDRAL : 16.588 1647 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G3Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27025 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M NA/K PHOSPHATE, PH 8.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 76.83150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.35869 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.09300 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 76.83150 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 44.35869 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.09300 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 76.83150 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 44.35869 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.09300 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 88.71737 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 66.18600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 88.71737 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 66.18600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 88.71737 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.18600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 221 REMARK 465 SER H 222 REMARK 465 CYS H 223 REMARK 465 ASP H 224 REMARK 465 LYS H 225 REMARK 465 THR H 226 REMARK 465 VAL C 1 REMARK 465 ARG C 2 REMARK 465 SER C 3 REMARK 465 SER C 4 REMARK 465 SER C 5 REMARK 465 ARG C 6 REMARK 465 THR C 7 REMARK 465 PRO C 8 REMARK 465 SER C 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR C 87 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU C 157 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 106 C - N - CA ANGL. DEV. = 11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 51 -44.79 71.17 REMARK 500 SER L 52 -7.42 -143.76 REMARK 500 THR L 69 -14.32 -142.08 REMARK 500 SER L 127 3.34 -55.81 REMARK 500 ASP L 151 53.65 39.22 REMARK 500 SER L 171 19.35 59.85 REMARK 500 GLU L 187 1.23 -64.79 REMARK 500 VAL H 2 96.69 57.30 REMARK 500 ASN H 57 176.73 57.25 REMARK 500 ALA H 59 88.96 50.27 REMARK 500 SER H 105 -92.54 -156.37 REMARK 500 SER H 137 58.25 -91.52 REMARK 500 SER H 139 71.16 13.38 REMARK 500 ASP H 151 79.45 48.03 REMARK 500 ASN H 211 29.94 49.89 REMARK 500 ARG C 32 -158.06 -135.79 REMARK 500 SER C 86 -82.78 -70.12 REMARK 500 GLN C 88 3.24 85.23 REMARK 500 GLN C 102 -112.67 123.70 REMARK 500 ARG C 103 -161.83 -126.16 REMARK 500 GLU C 107 135.94 84.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE H 56 ASN H 57 -147.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G3Z RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE DATABASE REFERENCES FOR CHAIN L, H DO NOT CURRENTLY REMARK 999 EXIST. DBREF 4G3Y L 1 214 PDB 4G3Y 4G3Y 1 214 DBREF 4G3Y H 1 226 PDB 4G3Y 4G3Y 1 226 DBREF 4G3Y C 1 157 UNP P01375 TNFA_HUMAN 77 233 SEQRES 1 L 214 ASP ILE LEU LEU THR GLN SER PRO ALA ILE LEU SER VAL SEQRES 2 L 214 SER PRO GLY GLU ARG VAL SER PHE SER CYS ARG ALA SER SEQRES 3 L 214 GLN PHE VAL GLY SER SER ILE HIS TRP TYR GLN GLN ARG SEQRES 4 L 214 THR ASN GLY SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 5 L 214 GLU SER MET SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN THR VAL SEQRES 7 L 214 GLU SER GLU ASP ILE ALA ASP TYR TYR CYS GLN GLN SER SEQRES 8 L 214 HIS SER TRP PRO PHE THR PHE GLY SER GLY THR ASN LEU SEQRES 9 L 214 GLU VAL LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 H 226 GLU VAL LYS LEU GLU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 226 PRO GLY GLY SER MET LYS LEU SER CYS VAL ALA SER GLY SEQRES 3 H 226 PHE ILE PHE SER ASN HIS TRP MET ASN TRP VAL ARG GLN SEQRES 4 H 226 SER PRO GLU LYS GLY LEU GLU TRP VAL ALA GLU ILE ARG SEQRES 5 H 226 SER LYS SER ILE ASN SER ALA THR HIS TYR ALA GLU SER SEQRES 6 H 226 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP SER LYS SEQRES 7 H 226 SER ALA VAL TYR LEU GLN MET THR ASP LEU ARG THR GLU SEQRES 8 H 226 ASP THR GLY VAL TYR TYR CYS SER ARG ASN TYR TYR GLY SEQRES 9 H 226 SER THR TYR ASP TYR TRP GLY GLN GLY THR THR LEU THR SEQRES 10 H 226 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 226 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 226 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 226 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 226 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 226 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 226 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 226 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SEQRES 18 H 226 SER CYS ASP LYS THR SEQRES 1 C 157 VAL ARG SER SER SER ARG THR PRO SER ASP LYS PRO VAL SEQRES 2 C 157 ALA HIS VAL VAL ALA ASN PRO GLN ALA GLU GLY GLN LEU SEQRES 3 C 157 GLN TRP LEU ASN ARG ARG ALA ASN ALA LEU LEU ALA ASN SEQRES 4 C 157 GLY VAL GLU LEU ARG ASP ASN GLN LEU VAL VAL PRO SER SEQRES 5 C 157 GLU GLY LEU TYR LEU ILE TYR SER GLN VAL LEU PHE LYS SEQRES 6 C 157 GLY GLN GLY CYS PRO SER THR HIS VAL LEU LEU THR HIS SEQRES 7 C 157 THR ILE SER ARG ILE ALA VAL SER TYR GLN THR LYS VAL SEQRES 8 C 157 ASN LEU LEU SER ALA ILE LYS SER PRO CYS GLN ARG GLU SEQRES 9 C 157 THR PRO GLU GLY ALA GLU ALA LYS PRO TRP TYR GLU PRO SEQRES 10 C 157 ILE TYR LEU GLY GLY VAL PHE GLN LEU GLU LYS GLY ASP SEQRES 11 C 157 ARG LEU SER ALA GLU ILE ASN ARG PRO ASP TYR LEU ASP SEQRES 12 C 157 PHE ALA GLU SER GLY GLN VAL TYR PHE GLY ILE ILE ALA SEQRES 13 C 157 LEU FORMUL 4 HOH *134(H2 O) HELIX 1 1 GLU L 79 ILE L 83 5 5 HELIX 2 2 SER L 121 SER L 127 1 7 HELIX 3 3 LYS L 183 GLU L 187 1 5 HELIX 4 4 ILE H 28 HIS H 32 5 5 HELIX 5 5 SER H 53 ASN H 57 5 5 HELIX 6 6 ARG H 89 THR H 93 5 5 HELIX 7 7 SER H 163 ALA H 165 5 3 HELIX 8 8 SER H 194 GLY H 197 5 4 HELIX 9 9 LYS H 208 ASN H 211 5 4 HELIX 10 10 ARG C 138 LEU C 142 5 5 SHEET 1 A 4 LEU L 4 THR L 5 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O LEU L 73 N PHE L 21 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 63 O SER L 74 SHEET 1 B 6 ILE L 10 VAL L 13 0 SHEET 2 B 6 THR L 102 VAL L 106 1 O GLU L 105 N VAL L 13 SHEET 3 B 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 B 6 ILE L 33 GLN L 38 -1 N HIS L 34 O GLN L 89 SHEET 5 B 6 ARG L 45 LYS L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 B 6 GLU L 53 SER L 54 -1 O GLU L 53 N LYS L 49 SHEET 1 C 4 ILE L 10 VAL L 13 0 SHEET 2 C 4 THR L 102 VAL L 106 1 O GLU L 105 N VAL L 13 SHEET 3 C 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 C 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 D 4 SER L 114 PHE L 118 0 SHEET 2 D 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 D 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 D 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 E 4 ALA L 144 LYS L 145 0 SHEET 2 E 4 VAL L 191 HIS L 198 -1 O THR L 197 N LYS L 145 SHEET 3 E 4 TRP L 148 VAL L 150 -1 N LYS L 149 O ALA L 193 SHEET 4 E 4 ALA L 153 LEU L 154 -1 O ALA L 153 N VAL L 150 SHEET 1 F 3 ALA L 144 LYS L 145 0 SHEET 2 F 3 VAL L 191 HIS L 198 -1 O THR L 197 N LYS L 145 SHEET 3 F 3 VAL L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SHEET 1 G 4 LYS H 3 SER H 7 0 SHEET 2 G 4 MET H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 G 4 ALA H 80 MET H 85 -1 O MET H 85 N MET H 18 SHEET 4 G 4 PHE H 70 ASP H 75 -1 N SER H 73 O TYR H 82 SHEET 1 H 6 GLY H 10 VAL H 12 0 SHEET 2 H 6 THR H 114 VAL H 118 1 O THR H 117 N GLY H 10 SHEET 3 H 6 GLY H 94 ASN H 101 -1 N TYR H 96 O THR H 114 SHEET 4 H 6 TRP H 33 SER H 40 -1 N VAL H 37 O TYR H 97 SHEET 5 H 6 GLY H 44 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 H 6 THR H 60 TYR H 62 -1 O HIS H 61 N GLU H 50 SHEET 1 I 4 GLY H 10 VAL H 12 0 SHEET 2 I 4 THR H 114 VAL H 118 1 O THR H 117 N GLY H 10 SHEET 3 I 4 GLY H 94 ASN H 101 -1 N TYR H 96 O THR H 114 SHEET 4 I 4 TYR H 107 TRP H 110 -1 O TYR H 109 N ARG H 100 SHEET 1 J 4 SER H 127 LEU H 131 0 SHEET 2 J 4 THR H 142 TYR H 152 -1 O GLY H 146 N LEU H 131 SHEET 3 J 4 TYR H 183 PRO H 192 -1 O VAL H 191 N ALA H 143 SHEET 4 J 4 VAL H 170 THR H 172 -1 N HIS H 171 O VAL H 188 SHEET 1 K 4 SER H 127 LEU H 131 0 SHEET 2 K 4 THR H 142 TYR H 152 -1 O GLY H 146 N LEU H 131 SHEET 3 K 4 TYR H 183 PRO H 192 -1 O VAL H 191 N ALA H 143 SHEET 4 K 4 VAL H 176 LEU H 177 -1 N VAL H 176 O SER H 184 SHEET 1 L 3 THR H 158 TRP H 161 0 SHEET 2 L 3 TYR H 201 HIS H 207 -1 O ASN H 206 N THR H 158 SHEET 3 L 3 THR H 212 VAL H 214 -1 O THR H 212 N HIS H 207 SHEET 1 M 3 THR H 158 TRP H 161 0 SHEET 2 M 3 TYR H 201 HIS H 207 -1 O ASN H 206 N THR H 158 SHEET 3 M 3 LYS H 217 VAL H 218 -1 O VAL H 218 N TYR H 201 SHEET 1 N 3 TRP C 28 LEU C 29 0 SHEET 2 N 3 VAL C 13 ALA C 18 -1 N VAL C 17 O LEU C 29 SHEET 3 N 3 LEU C 36 ALA C 38 -1 O LEU C 36 N HIS C 15 SHEET 1 O 5 TRP C 28 LEU C 29 0 SHEET 2 O 5 VAL C 13 ALA C 18 -1 N VAL C 17 O LEU C 29 SHEET 3 O 5 TYR C 151 ALA C 156 -1 O ILE C 154 N ALA C 14 SHEET 4 O 5 GLY C 54 GLN C 67 -1 N TYR C 59 O GLY C 153 SHEET 5 O 5 PRO C 113 LEU C 126 -1 O GLY C 122 N ILE C 58 SHEET 1 P 5 GLU C 42 ARG C 44 0 SHEET 2 P 5 GLN C 47 VAL C 49 -1 O VAL C 49 N GLU C 42 SHEET 3 P 5 ARG C 131 ILE C 136 -1 O LEU C 132 N LEU C 48 SHEET 4 P 5 LEU C 76 ILE C 83 -1 N THR C 79 O GLU C 135 SHEET 5 P 5 LYS C 90 LYS C 98 -1 O LEU C 94 N ILE C 80 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 98 1555 1555 2.05 SSBOND 4 CYS H 147 CYS H 203 1555 1555 2.03 SSBOND 5 CYS C 69 CYS C 101 1555 1555 2.06 CISPEP 1 SER L 7 PRO L 8 0 2.35 CISPEP 2 TRP L 94 PRO L 95 0 6.74 CISPEP 3 TYR L 140 PRO L 141 0 1.27 CISPEP 4 GLU H 1 VAL H 2 0 3.36 CISPEP 5 GLY H 140 GLY H 141 0 9.68 CISPEP 6 PHE H 153 PRO H 154 0 -3.35 CISPEP 7 GLU H 155 PRO H 156 0 0.91 CISPEP 8 CYS C 101 GLN C 102 0 -3.69 CRYST1 153.663 153.663 99.279 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006508 0.003757 0.000000 0.00000 SCALE2 0.000000 0.007514 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010073 0.00000