data_4G4F # _entry.id 4G4F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4G4F RCSB RCSB073724 WWPDB D_1000073724 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id NYSGRC-011107 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4G4F _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-07-16 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kumar, P.R.' 1 'Bhosle, R.' 2 'Nathenson, S.G.' 3 'Almo, S.C.' 4 'New York Structural Genomics Research Consortium (NYSGRC)' 5 'Atoms-to-Animals: The Immune Function Network (IFN)' 6 # _citation.id primary _citation.title 'Crystal structure of GITRL from Otolemur garnettii' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kumar, P.R.' 1 primary 'Nathenson, S.G.' 2 primary 'Almo, S.C.' 3 primary 'New York Structural Genomics Research Consortium (NYSGRC)' 4 primary 'Atoms-to-Animals: The Immune Function Network (IFN)' 5 # _cell.entry_id 4G4F _cell.length_a 52.194 _cell.length_b 52.194 _cell.length_c 144.720 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4G4F _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tumor necrosis factor ligand superfamily member 18' 14034.092 1 ? ? ? ? 2 water nat water 18.015 73 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GHTANKPCLAKFELLTSKWQMTSRKPPCVNSLPEGKLKILQDGLYLIYGQVAPSTAYKGVAPFAVQLRKNEAMLQTLTSN STIYDVGGTYEFHAGDIIDLIFDDEHQVLKNNTYWGIVLLANLFIS ; _entity_poly.pdbx_seq_one_letter_code_can ;GHTANKPCLAKFELLTSKWQMTSRKPPCVNSLPEGKLKILQDGLYLIYGQVAPSTAYKGVAPFAVQLRKNEAMLQTLTSN STIYDVGGTYEFHAGDIIDLIFDDEHQVLKNNTYWGIVLLANLFIS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGRC-011107 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 THR n 1 4 ALA n 1 5 ASN n 1 6 LYS n 1 7 PRO n 1 8 CYS n 1 9 LEU n 1 10 ALA n 1 11 LYS n 1 12 PHE n 1 13 GLU n 1 14 LEU n 1 15 LEU n 1 16 THR n 1 17 SER n 1 18 LYS n 1 19 TRP n 1 20 GLN n 1 21 MET n 1 22 THR n 1 23 SER n 1 24 ARG n 1 25 LYS n 1 26 PRO n 1 27 PRO n 1 28 CYS n 1 29 VAL n 1 30 ASN n 1 31 SER n 1 32 LEU n 1 33 PRO n 1 34 GLU n 1 35 GLY n 1 36 LYS n 1 37 LEU n 1 38 LYS n 1 39 ILE n 1 40 LEU n 1 41 GLN n 1 42 ASP n 1 43 GLY n 1 44 LEU n 1 45 TYR n 1 46 LEU n 1 47 ILE n 1 48 TYR n 1 49 GLY n 1 50 GLN n 1 51 VAL n 1 52 ALA n 1 53 PRO n 1 54 SER n 1 55 THR n 1 56 ALA n 1 57 TYR n 1 58 LYS n 1 59 GLY n 1 60 VAL n 1 61 ALA n 1 62 PRO n 1 63 PHE n 1 64 ALA n 1 65 VAL n 1 66 GLN n 1 67 LEU n 1 68 ARG n 1 69 LYS n 1 70 ASN n 1 71 GLU n 1 72 ALA n 1 73 MET n 1 74 LEU n 1 75 GLN n 1 76 THR n 1 77 LEU n 1 78 THR n 1 79 SER n 1 80 ASN n 1 81 SER n 1 82 THR n 1 83 ILE n 1 84 TYR n 1 85 ASP n 1 86 VAL n 1 87 GLY n 1 88 GLY n 1 89 THR n 1 90 TYR n 1 91 GLU n 1 92 PHE n 1 93 HIS n 1 94 ALA n 1 95 GLY n 1 96 ASP n 1 97 ILE n 1 98 ILE n 1 99 ASP n 1 100 LEU n 1 101 ILE n 1 102 PHE n 1 103 ASP n 1 104 ASP n 1 105 GLU n 1 106 HIS n 1 107 GLN n 1 108 VAL n 1 109 LEU n 1 110 LYS n 1 111 ASN n 1 112 ASN n 1 113 THR n 1 114 TYR n 1 115 TRP n 1 116 GLY n 1 117 ILE n 1 118 VAL n 1 119 LEU n 1 120 LEU n 1 121 ALA n 1 122 ASN n 1 123 LEU n 1 124 PHE n 1 125 ILE n 1 126 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene GITRL _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Otolemur garnettii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 30611 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4G4F _struct_ref.pdbx_db_accession 4G4F _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4G4F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 126 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4G4F _struct_ref_seq.db_align_beg -1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 124 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -1 _struct_ref_seq.pdbx_auth_seq_align_end 124 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4G4F _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_percent_sol 39.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;Protein (20 mM Hepes, pH 7.5, 150 mM NaCl, 10% glycerol, Reservoir (0.1M Bis-Tris-HCl pH 5.5, 0.2M Sodium Chloride, 25%(w/v) PEG3350), Cryoprotection (Reservoir + 20% MPD), temperature 298K, VAPOR DIFFUSION, SITTING DROP ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2012-06-14 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0750 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0750 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4G4F _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.850 _reflns.number_obs 10736 _reflns.number_all ? _reflns.percent_possible_obs 99.600 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.900 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.300 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 1.850 1.880 98.300 0.731 ? ? 4.500 ? ? ? ? ? ? 1 2 1.880 1.920 98.800 0.618 ? ? 5.300 ? ? ? ? ? ? 1 3 1.920 1.950 100.000 0.481 ? ? 6.300 ? ? ? ? ? ? 1 4 1.950 1.990 100.000 0.425 ? ? 7.600 ? ? ? ? ? ? 1 5 1.990 2.040 100.000 0.340 ? ? 7.700 ? ? ? ? ? ? 1 6 2.040 2.080 99.800 0.311 ? ? 7.700 ? ? ? ? ? ? 1 7 2.080 2.140 100.000 0.262 ? ? 7.800 ? ? ? ? ? ? 1 8 2.140 2.190 100.000 0.251 ? ? 7.600 ? ? ? ? ? ? 1 9 2.190 2.260 100.000 0.204 ? ? 7.800 ? ? ? ? ? ? 1 10 2.260 2.330 100.000 0.195 ? ? 7.800 ? ? ? ? ? ? 1 11 2.330 2.410 99.800 0.168 ? ? 7.700 ? ? ? ? ? ? 1 12 2.410 2.510 100.000 0.152 ? ? 7.700 ? ? ? ? ? ? 1 13 2.510 2.630 100.000 0.129 ? ? 7.700 ? ? ? ? ? ? 1 14 2.630 2.760 99.800 0.115 ? ? 7.700 ? ? ? ? ? ? 1 15 2.760 2.940 99.600 0.097 ? ? 7.600 ? ? ? ? ? ? 1 16 2.940 3.160 100.000 0.079 ? ? 7.600 ? ? ? ? ? ? 1 17 3.160 3.480 99.800 0.074 ? ? 7.300 ? ? ? ? ? ? 1 18 3.480 3.990 100.000 0.064 ? ? 7.400 ? ? ? ? ? ? 1 19 3.990 5.020 99.500 0.052 ? ? 7.300 ? ? ? ? ? ? 1 20 5.020 50.000 97.900 0.049 ? ? 6.800 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4G4F _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10699 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.146 _refine.ls_d_res_high 1.847 _refine.ls_percent_reflns_obs 99.58 _refine.ls_R_factor_obs 0.2090 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2074 _refine.ls_R_factor_R_free 0.2438 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.80 _refine.ls_number_reflns_R_free 514 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.500 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 43.6143 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 2Q1M _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.24 _refine.pdbx_overall_phase_error 27.02 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 905 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 73 _refine_hist.number_atoms_total 978 _refine_hist.d_res_high 1.847 _refine_hist.d_res_low 43.146 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 936 'X-RAY DIFFRACTION' ? f_angle_d 1.121 ? ? 1269 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.453 ? ? 343 'X-RAY DIFFRACTION' ? f_chiral_restr 0.084 ? ? 145 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 159 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.8471 2.0330 2449 0.2429 99.00 0.3095 . . 120 . . . . 'X-RAY DIFFRACTION' . 2.0330 2.3271 2469 0.2164 100.00 0.2980 . . 140 . . . . 'X-RAY DIFFRACTION' . 2.3271 2.9318 2528 0.2200 100.00 0.2468 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.9318 43.1575 2739 0.1938 100.00 0.2090 . . 116 . . . . # _struct.entry_id 4G4F _struct.title 'Crystal structure of GITRL from Bushbaby' _struct.pdbx_descriptor 'Tumor necrosis factor ligand superfamily member 18' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4G4F _struct_keywords.text ;GLUCOCORTICOID-INDUCED TNF RECEPTOR LIGAND, IMMUNE SYSTEM, TNFRSF18, Structural genomics, PSI-biology, New York Structural Genomics Research Consortium (NYSGRC), Atoms-to-Animals: The Immune Function Network, IFN ; _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a trimer generated from the monomer in the asymmetric unit by crystallographic symmetry operations' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 104 ? VAL A 108 ? ASP A 102 VAL A 106 5 ? 5 HELX_P HELX_P2 2 LEU A 109 ? ASN A 112 ? LEU A 107 ASN A 110 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 8 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 28 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 6 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 26 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 25 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 23 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 26 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 24 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -7.73 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 18 ? MET A 21 ? LYS A 16 MET A 19 A 2 LEU A 9 ? GLU A 13 ? LEU A 7 GLU A 11 A 3 TYR A 114 ? ASN A 122 ? TYR A 112 ASN A 120 A 4 GLY A 43 ? GLN A 50 ? GLY A 41 GLN A 48 A 5 GLY A 88 ? PHE A 92 ? GLY A 86 PHE A 90 B 1 VAL A 29 ? SER A 31 ? VAL A 27 SER A 29 B 2 LYS A 36 ? ILE A 39 ? LYS A 34 ILE A 37 B 3 ILE A 97 ? PHE A 102 ? ILE A 95 PHE A 100 B 4 PHE A 63 ? LYS A 69 ? PHE A 61 LYS A 67 B 5 ALA A 72 ? SER A 79 ? ALA A 70 SER A 77 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 20 ? O GLN A 18 N LYS A 11 ? N LYS A 9 A 2 3 N PHE A 12 ? N PHE A 10 O TRP A 115 ? O TRP A 113 A 3 4 O ALA A 121 ? O ALA A 119 N LEU A 44 ? N LEU A 42 A 4 5 N ILE A 47 ? N ILE A 45 O GLY A 88 ? O GLY A 86 B 1 2 N ASN A 30 ? N ASN A 28 O LYS A 38 ? O LYS A 36 B 2 3 N LEU A 37 ? N LEU A 35 O ILE A 98 ? O ILE A 96 B 3 4 O ASP A 99 ? O ASP A 97 N ARG A 68 ? N ARG A 66 B 4 5 N LYS A 69 ? N LYS A 67 O ALA A 72 ? O ALA A 70 # _atom_sites.entry_id 4G4F _atom_sites.fract_transf_matrix[1][1] 0.019159 _atom_sites.fract_transf_matrix[1][2] 0.011062 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022123 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006910 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 HIS 2 0 ? ? ? A . n A 1 3 THR 3 1 ? ? ? A . n A 1 4 ALA 4 2 ? ? ? A . n A 1 5 ASN 5 3 ? ? ? A . n A 1 6 LYS 6 4 4 LYS LYS A . n A 1 7 PRO 7 5 5 PRO PRO A . n A 1 8 CYS 8 6 6 CYS CYS A . n A 1 9 LEU 9 7 7 LEU LEU A . n A 1 10 ALA 10 8 8 ALA ALA A . n A 1 11 LYS 11 9 9 LYS LYS A . n A 1 12 PHE 12 10 10 PHE PHE A . n A 1 13 GLU 13 11 11 GLU GLU A . n A 1 14 LEU 14 12 12 LEU LEU A . n A 1 15 LEU 15 13 13 LEU LEU A . n A 1 16 THR 16 14 14 THR THR A . n A 1 17 SER 17 15 15 SER SER A . n A 1 18 LYS 18 16 16 LYS LYS A . n A 1 19 TRP 19 17 17 TRP TRP A . n A 1 20 GLN 20 18 18 GLN GLN A . n A 1 21 MET 21 19 19 MET MET A . n A 1 22 THR 22 20 20 THR THR A . n A 1 23 SER 23 21 21 SER SER A . n A 1 24 ARG 24 22 22 ARG ARG A . n A 1 25 LYS 25 23 23 LYS LYS A . n A 1 26 PRO 26 24 24 PRO PRO A . n A 1 27 PRO 27 25 25 PRO PRO A . n A 1 28 CYS 28 26 26 CYS CYS A . n A 1 29 VAL 29 27 27 VAL VAL A . n A 1 30 ASN 30 28 28 ASN ASN A . n A 1 31 SER 31 29 29 SER SER A . n A 1 32 LEU 32 30 30 LEU LEU A . n A 1 33 PRO 33 31 31 PRO PRO A . n A 1 34 GLU 34 32 32 GLU GLU A . n A 1 35 GLY 35 33 33 GLY GLY A . n A 1 36 LYS 36 34 34 LYS LYS A . n A 1 37 LEU 37 35 35 LEU LEU A . n A 1 38 LYS 38 36 36 LYS LYS A . n A 1 39 ILE 39 37 37 ILE ILE A . n A 1 40 LEU 40 38 38 LEU LEU A . n A 1 41 GLN 41 39 39 GLN GLN A . n A 1 42 ASP 42 40 40 ASP ASP A . n A 1 43 GLY 43 41 41 GLY GLY A . n A 1 44 LEU 44 42 42 LEU LEU A . n A 1 45 TYR 45 43 43 TYR TYR A . n A 1 46 LEU 46 44 44 LEU LEU A . n A 1 47 ILE 47 45 45 ILE ILE A . n A 1 48 TYR 48 46 46 TYR TYR A . n A 1 49 GLY 49 47 47 GLY GLY A . n A 1 50 GLN 50 48 48 GLN GLN A . n A 1 51 VAL 51 49 49 VAL VAL A . n A 1 52 ALA 52 50 50 ALA ALA A . n A 1 53 PRO 53 51 51 PRO PRO A . n A 1 54 SER 54 52 52 SER SER A . n A 1 55 THR 55 53 ? ? ? A . n A 1 56 ALA 56 54 ? ? ? A . n A 1 57 TYR 57 55 ? ? ? A . n A 1 58 LYS 58 56 ? ? ? A . n A 1 59 GLY 59 57 ? ? ? A . n A 1 60 VAL 60 58 ? ? ? A . n A 1 61 ALA 61 59 ? ? ? A . n A 1 62 PRO 62 60 60 PRO PRO A . n A 1 63 PHE 63 61 61 PHE PHE A . n A 1 64 ALA 64 62 62 ALA ALA A . n A 1 65 VAL 65 63 63 VAL VAL A . n A 1 66 GLN 66 64 64 GLN GLN A . n A 1 67 LEU 67 65 65 LEU LEU A . n A 1 68 ARG 68 66 66 ARG ARG A . n A 1 69 LYS 69 67 67 LYS LYS A . n A 1 70 ASN 70 68 68 ASN ASN A . n A 1 71 GLU 71 69 69 GLU GLU A . n A 1 72 ALA 72 70 70 ALA ALA A . n A 1 73 MET 73 71 71 MET MET A . n A 1 74 LEU 74 72 72 LEU LEU A . n A 1 75 GLN 75 73 73 GLN GLN A . n A 1 76 THR 76 74 74 THR THR A . n A 1 77 LEU 77 75 75 LEU LEU A . n A 1 78 THR 78 76 76 THR THR A . n A 1 79 SER 79 77 77 SER SER A . n A 1 80 ASN 80 78 78 ASN ASN A . n A 1 81 SER 81 79 79 SER SER A . n A 1 82 THR 82 80 80 THR THR A . n A 1 83 ILE 83 81 81 ILE ILE A . n A 1 84 TYR 84 82 82 TYR TYR A . n A 1 85 ASP 85 83 83 ASP ASP A . n A 1 86 VAL 86 84 84 VAL VAL A . n A 1 87 GLY 87 85 85 GLY GLY A . n A 1 88 GLY 88 86 86 GLY GLY A . n A 1 89 THR 89 87 87 THR THR A . n A 1 90 TYR 90 88 88 TYR TYR A . n A 1 91 GLU 91 89 89 GLU GLU A . n A 1 92 PHE 92 90 90 PHE PHE A . n A 1 93 HIS 93 91 91 HIS HIS A . n A 1 94 ALA 94 92 92 ALA ALA A . n A 1 95 GLY 95 93 93 GLY GLY A . n A 1 96 ASP 96 94 94 ASP ASP A . n A 1 97 ILE 97 95 95 ILE ILE A . n A 1 98 ILE 98 96 96 ILE ILE A . n A 1 99 ASP 99 97 97 ASP ASP A . n A 1 100 LEU 100 98 98 LEU LEU A . n A 1 101 ILE 101 99 99 ILE ILE A . n A 1 102 PHE 102 100 100 PHE PHE A . n A 1 103 ASP 103 101 101 ASP ASP A . n A 1 104 ASP 104 102 102 ASP ASP A . n A 1 105 GLU 105 103 103 GLU GLU A . n A 1 106 HIS 106 104 104 HIS HIS A . n A 1 107 GLN 107 105 105 GLN GLN A . n A 1 108 VAL 108 106 106 VAL VAL A . n A 1 109 LEU 109 107 107 LEU LEU A . n A 1 110 LYS 110 108 108 LYS LYS A . n A 1 111 ASN 111 109 109 ASN ASN A . n A 1 112 ASN 112 110 110 ASN ASN A . n A 1 113 THR 113 111 111 THR THR A . n A 1 114 TYR 114 112 112 TYR TYR A . n A 1 115 TRP 115 113 113 TRP TRP A . n A 1 116 GLY 116 114 114 GLY GLY A . n A 1 117 ILE 117 115 115 ILE ILE A . n A 1 118 VAL 118 116 116 VAL VAL A . n A 1 119 LEU 119 117 117 LEU LEU A . n A 1 120 LEU 120 118 118 LEU LEU A . n A 1 121 ALA 121 119 119 ALA ALA A . n A 1 122 ASN 122 120 120 ASN ASN A . n A 1 123 LEU 123 121 121 LEU LEU A . n A 1 124 PHE 124 122 122 PHE PHE A . n A 1 125 ILE 125 123 123 ILE ILE A . n A 1 126 SER 126 124 124 SER SER A . n # loop_ _pdbx_SG_project.id _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.initial_of_center 1 PSI:Biology 'New York Structural Genomics Research Consortium' NYSGRC 2 PSI:Biology 'Atoms-to-Animals: The Immune Function Network' IFN # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3 A,B 2 1,2,3,4,5,6 A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3900 ? 1 MORE -24 ? 1 'SSA (A^2)' 15350 ? 2 'ABSA (A^2)' 9180 ? 2 MORE -59 ? 2 'SSA (A^2)' 29340 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 -52.1940000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5000000000 0.8660254038 0.0000000000 -26.0970000000 -0.8660254038 -0.5000000000 0.0000000000 -45.2013299251 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/2 0.5000000000 -0.8660254038 0.0000000000 -26.0970000000 -0.8660254038 -0.5000000000 0.0000000000 -45.2013299251 0.0000000000 0.0000000000 -1.0000000000 -72.3600000000 5 'crystal symmetry operation' 11_454 -x+y-1,y,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 -52.1940000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -72.3600000000 6 'crystal symmetry operation' 12_554 x,x-y,-z-1/2 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -72.3600000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 231 ? B HOH . 2 1 A HOH 264 ? B HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2012-08-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -13.5400 -3.1185 -9.8091 0.3181 0.2466 0.3685 0.0418 0.0022 -0.0380 3.9184 9.0945 6.5613 0.7735 0.3205 -5.2627 -0.1171 -0.1681 0.3925 0.4800 0.0188 0.3030 -0.3072 -0.1709 0.0143 'X-RAY DIFFRACTION' 2 ? refined -12.0328 -9.8625 -13.7410 0.2213 0.2301 0.2849 -0.0046 0.0237 -0.0217 4.1499 2.2601 2.3427 0.5284 0.6940 -0.2959 0.0145 -0.0256 0.1521 0.1613 -0.0215 -0.2406 -0.0820 0.2681 0.0667 'X-RAY DIFFRACTION' 3 ? refined -16.0452 -11.5652 -24.9679 0.2750 0.2769 0.3230 -0.0133 0.0104 -0.0528 4.3694 4.8396 6.6456 -4.0562 4.6882 -4.5454 0.3468 0.4115 -0.1770 -0.4514 -0.2160 0.1309 0.4289 0.2318 -0.1797 'X-RAY DIFFRACTION' 4 ? refined -13.0415 -5.4672 -20.5477 0.2336 0.2678 0.2735 -0.0539 -0.0102 0.0432 4.6343 4.2339 3.5491 -0.7453 0.8835 0.1685 -0.0854 0.5184 0.3879 -0.5044 -0.0926 -0.3061 -0.2858 0.2102 0.0868 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 4 through 23 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 24 through 60 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 61 through 91 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 92 through 121 ) ; # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 PHENIX 1.8_1069 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 CBASS . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 PHENIX . ? ? ? ? phasing ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 220 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 263 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.96 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 68 ? ? 52.78 -120.95 2 1 ASP A 102 ? ? -170.61 114.74 3 1 ASP A 102 ? ? -170.61 115.06 4 1 LEU A 121 ? ? -106.28 58.91 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A HIS 0 ? A HIS 2 3 1 Y 1 A THR 1 ? A THR 3 4 1 Y 1 A ALA 2 ? A ALA 4 5 1 Y 1 A ASN 3 ? A ASN 5 6 1 Y 1 A THR 53 ? A THR 55 7 1 Y 1 A ALA 54 ? A ALA 56 8 1 Y 1 A TYR 55 ? A TYR 57 9 1 Y 1 A LYS 56 ? A LYS 58 10 1 Y 1 A GLY 57 ? A GLY 59 11 1 Y 1 A VAL 58 ? A VAL 60 12 1 Y 1 A ALA 59 ? A ALA 61 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 1 HOH HOH A . B 2 HOH 2 202 2 HOH HOH A . B 2 HOH 3 203 3 HOH HOH A . B 2 HOH 4 204 4 HOH HOH A . B 2 HOH 5 205 5 HOH HOH A . B 2 HOH 6 206 6 HOH HOH A . B 2 HOH 7 207 7 HOH HOH A . B 2 HOH 8 208 8 HOH HOH A . B 2 HOH 9 209 9 HOH HOH A . B 2 HOH 10 210 10 HOH HOH A . B 2 HOH 11 211 11 HOH HOH A . B 2 HOH 12 212 12 HOH HOH A . B 2 HOH 13 213 13 HOH HOH A . B 2 HOH 14 214 14 HOH HOH A . B 2 HOH 15 215 15 HOH HOH A . B 2 HOH 16 216 16 HOH HOH A . B 2 HOH 17 217 17 HOH HOH A . B 2 HOH 18 218 18 HOH HOH A . B 2 HOH 19 219 19 HOH HOH A . B 2 HOH 20 220 20 HOH HOH A . B 2 HOH 21 221 21 HOH HOH A . B 2 HOH 22 222 22 HOH HOH A . B 2 HOH 23 223 23 HOH HOH A . B 2 HOH 24 224 24 HOH HOH A . B 2 HOH 25 225 25 HOH HOH A . B 2 HOH 26 226 26 HOH HOH A . B 2 HOH 27 227 27 HOH HOH A . B 2 HOH 28 228 28 HOH HOH A . B 2 HOH 29 229 29 HOH HOH A . B 2 HOH 30 230 30 HOH HOH A . B 2 HOH 31 231 31 HOH HOH A . B 2 HOH 32 232 32 HOH HOH A . B 2 HOH 33 233 33 HOH HOH A . B 2 HOH 34 234 34 HOH HOH A . B 2 HOH 35 235 35 HOH HOH A . B 2 HOH 36 236 36 HOH HOH A . B 2 HOH 37 237 37 HOH HOH A . B 2 HOH 38 238 38 HOH HOH A . B 2 HOH 39 239 39 HOH HOH A . B 2 HOH 40 240 40 HOH HOH A . B 2 HOH 41 241 41 HOH HOH A . B 2 HOH 42 242 42 HOH HOH A . B 2 HOH 43 243 43 HOH HOH A . B 2 HOH 44 244 44 HOH HOH A . B 2 HOH 45 245 45 HOH HOH A . B 2 HOH 46 246 46 HOH HOH A . B 2 HOH 47 247 47 HOH HOH A . B 2 HOH 48 248 48 HOH HOH A . B 2 HOH 49 249 49 HOH HOH A . B 2 HOH 50 250 50 HOH HOH A . B 2 HOH 51 251 51 HOH HOH A . B 2 HOH 52 252 52 HOH HOH A . B 2 HOH 53 253 53 HOH HOH A . B 2 HOH 54 254 54 HOH HOH A . B 2 HOH 55 255 55 HOH HOH A . B 2 HOH 56 256 56 HOH HOH A . B 2 HOH 57 257 57 HOH HOH A . B 2 HOH 58 258 58 HOH HOH A . B 2 HOH 59 259 59 HOH HOH A . B 2 HOH 60 260 60 HOH HOH A . B 2 HOH 61 261 61 HOH HOH A . B 2 HOH 62 262 62 HOH HOH A . B 2 HOH 63 263 63 HOH HOH A . B 2 HOH 64 264 64 HOH HOH A . B 2 HOH 65 265 65 HOH HOH A . B 2 HOH 66 266 66 HOH HOH A . B 2 HOH 67 267 67 HOH HOH A . B 2 HOH 68 268 68 HOH HOH A . B 2 HOH 69 269 69 HOH HOH A . B 2 HOH 70 270 70 HOH HOH A . B 2 HOH 71 271 71 HOH HOH A . B 2 HOH 72 272 72 HOH HOH A . B 2 HOH 73 273 73 HOH HOH A . #