data_4G4K # _entry.id 4G4K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4G4K pdb_00004g4k 10.2210/pdb4g4k/pdb RCSB RCSB073729 ? ? WWPDB D_1000073729 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3BS1 _pdbx_database_related.details 'AgrA LytTR domain bound to DNA duplex' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4G4K _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-07-16 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Leonard, P.G.' 1 'Bezar, I.F.' 2 'Stock, A.M.' 3 # _citation.id primary _citation.title ;Identification of a Hydrophobic Cleft in the LytTR Domain of AgrA as a Locus for Small Molecule Interactions That Inhibit DNA Binding. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 51 _citation.page_first 10035 _citation.page_last 10043 _citation.year 2012 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23181972 _citation.pdbx_database_id_DOI 10.1021/bi3011785 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Leonard, P.G.' 1 ? primary 'Bezar, I.F.' 2 ? primary 'Sidote, D.J.' 3 ? primary 'Stock, A.M.' 4 ? # _cell.length_a 41.414 _cell.length_b 45.894 _cell.length_c 112.138 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4G4K _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 4G4K _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Accessory gene regulator protein A' 12357.919 2 ? ? 'AgrA LytTR domain' ? 2 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 3 water nat water 18.015 254 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MDNSVETIELKRGSNSVYVQYDDIMFFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDS KERIVYFKNKEHCYASVRNVKKI ; _entity_poly.pdbx_seq_one_letter_code_can ;MDNSVETIELKRGSNSVYVQYDDIMFFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDS KERIVYFKNKEHCYASVRNVKKI ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 ASN n 1 4 SER n 1 5 VAL n 1 6 GLU n 1 7 THR n 1 8 ILE n 1 9 GLU n 1 10 LEU n 1 11 LYS n 1 12 ARG n 1 13 GLY n 1 14 SER n 1 15 ASN n 1 16 SER n 1 17 VAL n 1 18 TYR n 1 19 VAL n 1 20 GLN n 1 21 TYR n 1 22 ASP n 1 23 ASP n 1 24 ILE n 1 25 MET n 1 26 PHE n 1 27 PHE n 1 28 GLU n 1 29 SER n 1 30 SER n 1 31 THR n 1 32 LYS n 1 33 SER n 1 34 HIS n 1 35 ARG n 1 36 LEU n 1 37 ILE n 1 38 ALA n 1 39 HIS n 1 40 LEU n 1 41 ASP n 1 42 ASN n 1 43 ARG n 1 44 GLN n 1 45 ILE n 1 46 GLU n 1 47 PHE n 1 48 TYR n 1 49 GLY n 1 50 ASN n 1 51 LEU n 1 52 LYS n 1 53 GLU n 1 54 LEU n 1 55 SER n 1 56 GLN n 1 57 LEU n 1 58 ASP n 1 59 ASP n 1 60 ARG n 1 61 PHE n 1 62 PHE n 1 63 ARG n 1 64 CYS n 1 65 HIS n 1 66 ASN n 1 67 SER n 1 68 PHE n 1 69 VAL n 1 70 VAL n 1 71 ASN n 1 72 ARG n 1 73 HIS n 1 74 ASN n 1 75 ILE n 1 76 GLU n 1 77 SER n 1 78 ILE n 1 79 ASP n 1 80 SER n 1 81 LYS n 1 82 GLU n 1 83 ARG n 1 84 ILE n 1 85 VAL n 1 86 TYR n 1 87 PHE n 1 88 LYS n 1 89 ASN n 1 90 LYS n 1 91 GLU n 1 92 HIS n 1 93 CYS n 1 94 TYR n 1 95 ALA n 1 96 SER n 1 97 VAL n 1 98 ARG n 1 99 ASN n 1 100 VAL n 1 101 LYS n 1 102 LYS n 1 103 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'agr, agrA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 866768 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-Gold(DE3)pLysS AG' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET9a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AGRA_STAAU _struct_ref.pdbx_db_accession P0A0I7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DNSVETIELKRGSNSVYVQYDDIMFFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSK ERIVYFKNKEHCYASVRNVKKI ; _struct_ref.pdbx_align_begin 137 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4G4K A 2 ? 103 ? P0A0I7 137 ? 238 ? 137 238 2 1 4G4K B 2 ? 103 ? P0A0I7 137 ? 238 ? 137 238 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4G4K MET A 1 ? UNP P0A0I7 ? ? 'initiating methionine' 136 1 2 4G4K MET B 1 ? UNP P0A0I7 ? ? 'initiating methionine' 136 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4G4K _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '100 mM Tris, 150 mM LiSO4, 11% (w/v) PEG 4000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2009-06-18 _diffrn_detector.details 'VARIMAX HR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_wavelength_list 1.54178 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 4G4K _reflns.d_resolution_high 1.520 _reflns.d_resolution_low 25.000 _reflns.number_obs 32840 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 16.600 _reflns.pdbx_chi_squared 1.659 _reflns.pdbx_redundancy 3.300 _reflns.percent_possible_obs 97.200 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 32840 _reflns.pdbx_Rsym_value 0.045 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.520 1.550 ? ? ? ? 2.0 0.563 1.345 2.700 ? 1490 89.800 1 1 1.550 1.570 ? ? ? ? 2.6 0.514 1.452 3.100 ? 1548 93.700 2 1 1.570 1.600 ? ? ? ? 3.3 0.425 1.418 3.200 ? 1591 95.600 3 1 1.600 1.640 ? ? ? ? 4.2 0.355 1.462 3.300 ? 1567 94.400 4 1 1.640 1.670 ? ? ? ? 4.8 0.309 1.426 3.300 ? 1613 96.800 5 1 1.670 1.710 ? ? ? ? 5.9 0.265 1.562 3.300 ? 1577 95.400 6 1 1.710 1.750 ? ? ? ? 7.4 0.210 1.572 3.300 ? 1624 97.000 7 1 1.750 1.800 ? ? ? ? 8.9 0.185 1.657 3.300 ? 1616 97.200 8 1 1.800 1.860 ? ? ? ? 10.7 0.157 1.648 3.300 ? 1617 97.100 9 1 1.860 1.910 ? ? ? ? 12.7 0.135 1.800 3.300 ? 1614 96.900 10 1 1.910 1.980 ? ? ? ? 15.6 0.110 1.768 3.400 ? 1662 98.500 11 1 1.980 2.060 ? ? ? ? 19.9 0.088 1.822 3.400 ? 1663 98.300 12 1 2.060 2.160 ? ? ? ? 24.2 0.071 1.833 3.400 ? 1631 98.700 13 1 2.160 2.270 ? ? ? ? 28.1 0.061 1.860 3.500 ? 1655 98.600 14 1 2.270 2.410 ? ? ? ? 30.9 0.055 1.846 3.500 ? 1693 99.000 15 1 2.410 2.600 ? ? ? ? 33.7 0.049 1.793 3.500 ? 1689 99.500 16 1 2.600 2.860 ? ? ? ? 39.0 0.042 1.812 3.500 ? 1701 99.900 17 1 2.860 3.270 ? ? ? ? 46.3 0.034 1.823 3.500 ? 1738 100.000 18 1 3.270 4.120 ? ? ? ? 50.6 0.027 1.680 3.500 ? 1747 99.900 19 1 4.120 25.000 ? ? ? ? 52.0 0.022 1.332 3.300 ? 1804 97.400 20 1 # _refine.entry_id 4G4K _refine.ls_d_res_high 1.5200 _refine.ls_d_res_low 20.7160 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 94.7900 _refine.ls_number_reflns_obs 31964 _refine.ls_number_reflns_all 32797 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details 'Random selection' _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1813 _refine.ls_R_factor_R_work 0.1798 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2086 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0100 _refine.ls_number_reflns_R_free 1600 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 22.1630 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model Isotropic _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1700 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3BS1' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 64.790 _refine.B_iso_min 9.640 _refine.pdbx_overall_phase_error 21.4400 _refine.occupancy_max 1.000 _refine.occupancy_min 0.380 _refine.pdbx_ls_sigma_I 0.0 _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1677 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 254 _refine_hist.number_atoms_total 1949 _refine_hist.d_res_high 1.5200 _refine_hist.d_res_low 20.7160 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1755 0.006 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 2357 1.048 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 248 0.083 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 306 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 676 13.135 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.5200 1.5690 11 82.0000 2347 . 0.3159 0.3638 . 116 . 2463 2463 . 'X-RAY DIFFRACTION' 1.5690 1.6251 11 89.0000 2573 . 0.2420 0.2681 . 136 . 2709 2706 . 'X-RAY DIFFRACTION' 1.6251 1.6901 11 92.0000 2637 . 0.2129 0.2310 . 145 . 2782 2782 . 'X-RAY DIFFRACTION' 1.6901 1.7670 11 93.0000 2709 . 0.1948 0.2308 . 142 . 2851 2851 . 'X-RAY DIFFRACTION' 1.7670 1.8601 11 95.0000 2717 . 0.1818 0.2084 . 146 . 2863 2863 . 'X-RAY DIFFRACTION' 1.8601 1.9766 11 96.0000 2785 . 0.1754 0.2187 . 147 . 2932 2932 . 'X-RAY DIFFRACTION' 1.9766 2.1291 11 98.0000 2815 . 0.1661 0.2492 . 149 . 2964 2964 . 'X-RAY DIFFRACTION' 2.1291 2.3431 11 98.0000 2845 . 0.1713 0.1915 . 150 . 2995 2995 . 'X-RAY DIFFRACTION' 2.3431 2.6815 11 99.0000 2913 . 0.1858 0.1931 . 153 . 3066 3066 . 'X-RAY DIFFRACTION' 2.6815 3.3760 11 100.0000 2947 . 0.1791 0.2065 . 155 . 3102 3102 . 'X-RAY DIFFRACTION' 3.3760 20.7178 11 99.0000 3076 . 0.1657 0.1899 . 161 . 3237 3237 . 'X-RAY DIFFRACTION' # _struct.entry_id 4G4K _struct.title 'Structure of the Staphylococcus aureus AgrA LytTR Domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4G4K _struct_keywords.text ;AgrA, Response Regulator, Activator, Transcription Factor, Phosphoprotein, transcription regulation, two-component system, LytTR domain, DNA BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 50 ? GLN A 56 ? ASN A 185 GLN A 191 1 ? 7 HELX_P HELX_P2 2 ASN A 99 ? ILE A 103 ? ASN A 234 ILE A 238 5 ? 5 HELX_P HELX_P3 3 ASN B 50 ? GLN B 56 ? ASN B 185 GLN B 191 1 ? 7 HELX_P HELX_P4 4 ASN B 99 ? ILE B 103 ? ASN B 234 ILE B 238 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 3 ? D ? 2 ? E ? 5 ? F ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 7 ? LYS A 11 ? THR A 142 LYS A 146 A 2 SER A 16 ? GLN A 20 ? SER A 151 GLN A 155 B 1 GLN A 44 ? PHE A 47 ? GLN A 179 PHE A 182 B 2 LEU A 36 ? LEU A 40 ? LEU A 171 LEU A 175 B 3 ILE A 24 ? GLU A 28 ? ILE A 159 GLU A 163 B 4 PHE A 68 ? ASN A 71 ? PHE A 203 ASN A 206 B 5 PHE A 61 ? HIS A 65 ? PHE A 196 HIS A 200 C 1 ILE A 75 ? ASP A 79 ? ILE A 210 ASP A 214 C 2 ILE A 84 ? PHE A 87 ? ILE A 219 PHE A 222 C 3 HIS A 92 ? TYR A 94 ? HIS A 227 TYR A 229 D 1 THR B 7 ? LEU B 10 ? THR B 142 LEU B 145 D 2 VAL B 17 ? GLN B 20 ? VAL B 152 GLN B 155 E 1 GLN B 44 ? PHE B 47 ? GLN B 179 PHE B 182 E 2 LEU B 36 ? LEU B 40 ? LEU B 171 LEU B 175 E 3 ILE B 24 ? SER B 29 ? ILE B 159 SER B 164 E 4 PHE B 68 ? ASN B 71 ? PHE B 203 ASN B 206 E 5 PHE B 61 ? HIS B 65 ? PHE B 196 HIS B 200 F 1 ILE B 75 ? ASP B 79 ? ILE B 210 ASP B 214 F 2 ILE B 84 ? PHE B 87 ? ILE B 219 PHE B 222 F 3 HIS B 92 ? TYR B 94 ? HIS B 227 TYR B 229 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 10 ? N LEU A 145 O VAL A 17 ? O VAL A 152 B 1 2 O ILE A 45 ? O ILE A 180 N ALA A 38 ? N ALA A 173 B 2 3 O HIS A 39 ? O HIS A 174 N MET A 25 ? N MET A 160 B 3 4 N PHE A 27 ? N PHE A 162 O VAL A 69 ? O VAL A 204 B 4 5 O VAL A 70 ? O VAL A 205 N PHE A 62 ? N PHE A 197 C 1 2 N GLU A 76 ? N GLU A 211 O TYR A 86 ? O TYR A 221 C 2 3 N VAL A 85 ? N VAL A 220 O CYS A 93 ? O CYS A 228 D 1 2 N ILE B 8 ? N ILE B 143 O VAL B 19 ? O VAL B 154 E 1 2 O ILE B 45 ? O ILE B 180 N ALA B 38 ? N ALA B 173 E 2 3 O HIS B 39 ? O HIS B 174 N MET B 25 ? N MET B 160 E 3 4 N PHE B 27 ? N PHE B 162 O VAL B 69 ? O VAL B 204 E 4 5 O VAL B 70 ? O VAL B 205 N PHE B 62 ? N PHE B 197 F 1 2 N GLU B 76 ? N GLU B 211 O TYR B 86 ? O TYR B 221 F 2 3 N VAL B 85 ? N VAL B 220 O CYS B 93 ? O CYS B 228 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 301 ? 7 'BINDING SITE FOR RESIDUE GOL A 301' AC2 Software A GOL 302 ? 3 'BINDING SITE FOR RESIDUE GOL A 302' AC3 Software B GOL 301 ? 9 'BINDING SITE FOR RESIDUE GOL B 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HIS A 65 ? HIS A 200 . ? 1_555 ? 2 AC1 7 ARG A 83 ? ARG A 218 . ? 1_555 ? 3 AC1 7 HOH F . ? HOH A 402 . ? 1_555 ? 4 AC1 7 HOH F . ? HOH A 483 . ? 1_555 ? 5 AC1 7 HOH F . ? HOH A 550 . ? 1_555 ? 6 AC1 7 ASN B 42 ? ASN B 177 . ? 1_555 ? 7 AC1 7 ARG B 43 ? ARG B 178 . ? 1_555 ? 8 AC2 3 ARG A 43 ? ARG A 178 . ? 1_555 ? 9 AC2 3 HIS B 65 ? HIS B 200 . ? 1_565 ? 10 AC2 3 HOH G . ? HOH B 448 . ? 1_565 ? 11 AC3 9 ARG A 72 ? ARG A 207 . ? 4_466 ? 12 AC3 9 LYS A 90 ? LYS A 225 . ? 1_555 ? 13 AC3 9 ILE A 103 ? ILE A 238 . ? 4_466 ? 14 AC3 9 HOH F . ? HOH A 452 . ? 4_466 ? 15 AC3 9 GLU B 9 ? GLU B 144 . ? 1_555 ? 16 AC3 9 LYS B 11 ? LYS B 146 . ? 1_555 ? 17 AC3 9 TYR B 18 ? TYR B 153 . ? 1_555 ? 18 AC3 9 HOH G . ? HOH B 406 . ? 1_555 ? 19 AC3 9 HOH G . ? HOH B 410 . ? 1_555 ? # _atom_sites.entry_id 4G4K _atom_sites.fract_transf_matrix[1][1] 0.024146 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021789 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008918 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 136 ? ? ? A . n A 1 2 ASP 2 137 ? ? ? A . n A 1 3 ASN 3 138 ? ? ? A . n A 1 4 SER 4 139 ? ? ? A . n A 1 5 VAL 5 140 ? ? ? A . n A 1 6 GLU 6 141 141 GLU GLU A . n A 1 7 THR 7 142 142 THR THR A . n A 1 8 ILE 8 143 143 ILE ILE A . n A 1 9 GLU 9 144 144 GLU GLU A . n A 1 10 LEU 10 145 145 LEU LEU A . n A 1 11 LYS 11 146 146 LYS LYS A . n A 1 12 ARG 12 147 147 ARG ARG A . n A 1 13 GLY 13 148 148 GLY GLY A . n A 1 14 SER 14 149 149 SER SER A . n A 1 15 ASN 15 150 150 ASN ASN A . n A 1 16 SER 16 151 151 SER SER A . n A 1 17 VAL 17 152 152 VAL VAL A . n A 1 18 TYR 18 153 153 TYR TYR A . n A 1 19 VAL 19 154 154 VAL VAL A . n A 1 20 GLN 20 155 155 GLN GLN A . n A 1 21 TYR 21 156 156 TYR TYR A . n A 1 22 ASP 22 157 157 ASP ASP A . n A 1 23 ASP 23 158 158 ASP ASP A . n A 1 24 ILE 24 159 159 ILE ILE A . n A 1 25 MET 25 160 160 MET MET A . n A 1 26 PHE 26 161 161 PHE PHE A . n A 1 27 PHE 27 162 162 PHE PHE A . n A 1 28 GLU 28 163 163 GLU GLU A . n A 1 29 SER 29 164 164 SER SER A . n A 1 30 SER 30 165 165 SER SER A . n A 1 31 THR 31 166 166 THR THR A . n A 1 32 LYS 32 167 167 LYS LYS A . n A 1 33 SER 33 168 168 SER SER A . n A 1 34 HIS 34 169 169 HIS HIS A . n A 1 35 ARG 35 170 170 ARG ARG A . n A 1 36 LEU 36 171 171 LEU LEU A . n A 1 37 ILE 37 172 172 ILE ILE A . n A 1 38 ALA 38 173 173 ALA ALA A . n A 1 39 HIS 39 174 174 HIS HIS A . n A 1 40 LEU 40 175 175 LEU LEU A . n A 1 41 ASP 41 176 176 ASP ASP A . n A 1 42 ASN 42 177 177 ASN ASN A . n A 1 43 ARG 43 178 178 ARG ARG A . n A 1 44 GLN 44 179 179 GLN GLN A . n A 1 45 ILE 45 180 180 ILE ILE A . n A 1 46 GLU 46 181 181 GLU GLU A . n A 1 47 PHE 47 182 182 PHE PHE A . n A 1 48 TYR 48 183 183 TYR TYR A . n A 1 49 GLY 49 184 184 GLY GLY A . n A 1 50 ASN 50 185 185 ASN ASN A . n A 1 51 LEU 51 186 186 LEU LEU A . n A 1 52 LYS 52 187 187 LYS LYS A . n A 1 53 GLU 53 188 188 GLU GLU A . n A 1 54 LEU 54 189 189 LEU LEU A . n A 1 55 SER 55 190 190 SER SER A . n A 1 56 GLN 56 191 191 GLN GLN A . n A 1 57 LEU 57 192 192 LEU LEU A . n A 1 58 ASP 58 193 193 ASP ASP A . n A 1 59 ASP 59 194 194 ASP ASP A . n A 1 60 ARG 60 195 195 ARG ARG A . n A 1 61 PHE 61 196 196 PHE PHE A . n A 1 62 PHE 62 197 197 PHE PHE A . n A 1 63 ARG 63 198 198 ARG ARG A . n A 1 64 CYS 64 199 199 CYS CYS A . n A 1 65 HIS 65 200 200 HIS HIS A . n A 1 66 ASN 66 201 201 ASN ASN A . n A 1 67 SER 67 202 202 SER SER A . n A 1 68 PHE 68 203 203 PHE PHE A . n A 1 69 VAL 69 204 204 VAL VAL A . n A 1 70 VAL 70 205 205 VAL VAL A . n A 1 71 ASN 71 206 206 ASN ASN A . n A 1 72 ARG 72 207 207 ARG ARG A . n A 1 73 HIS 73 208 208 HIS HIS A . n A 1 74 ASN 74 209 209 ASN ASN A . n A 1 75 ILE 75 210 210 ILE ILE A . n A 1 76 GLU 76 211 211 GLU GLU A . n A 1 77 SER 77 212 212 SER SER A . n A 1 78 ILE 78 213 213 ILE ILE A . n A 1 79 ASP 79 214 214 ASP ASP A . n A 1 80 SER 80 215 215 SER SER A . n A 1 81 LYS 81 216 216 LYS LYS A . n A 1 82 GLU 82 217 217 GLU GLU A . n A 1 83 ARG 83 218 218 ARG ARG A . n A 1 84 ILE 84 219 219 ILE ILE A . n A 1 85 VAL 85 220 220 VAL VAL A . n A 1 86 TYR 86 221 221 TYR TYR A . n A 1 87 PHE 87 222 222 PHE PHE A . n A 1 88 LYS 88 223 223 LYS LYS A . n A 1 89 ASN 89 224 224 ASN ASN A . n A 1 90 LYS 90 225 225 LYS LYS A . n A 1 91 GLU 91 226 226 GLU GLU A . n A 1 92 HIS 92 227 227 HIS HIS A . n A 1 93 CYS 93 228 228 CYS CYS A . n A 1 94 TYR 94 229 229 TYR TYR A . n A 1 95 ALA 95 230 230 ALA ALA A . n A 1 96 SER 96 231 231 SER SER A . n A 1 97 VAL 97 232 232 VAL VAL A . n A 1 98 ARG 98 233 233 ARG ARG A . n A 1 99 ASN 99 234 234 ASN ASN A . n A 1 100 VAL 100 235 235 VAL VAL A . n A 1 101 LYS 101 236 236 LYS LYS A . n A 1 102 LYS 102 237 237 LYS LYS A . n A 1 103 ILE 103 238 238 ILE ILE A . n B 1 1 MET 1 136 ? ? ? B . n B 1 2 ASP 2 137 ? ? ? B . n B 1 3 ASN 3 138 ? ? ? B . n B 1 4 SER 4 139 139 SER SER B . n B 1 5 VAL 5 140 140 VAL VAL B . n B 1 6 GLU 6 141 141 GLU GLU B . n B 1 7 THR 7 142 142 THR THR B . n B 1 8 ILE 8 143 143 ILE ILE B . n B 1 9 GLU 9 144 144 GLU GLU B . n B 1 10 LEU 10 145 145 LEU LEU B . n B 1 11 LYS 11 146 146 LYS LYS B . n B 1 12 ARG 12 147 147 ARG ARG B . n B 1 13 GLY 13 148 148 GLY GLY B . n B 1 14 SER 14 149 149 SER SER B . n B 1 15 ASN 15 150 150 ASN ASN B . n B 1 16 SER 16 151 151 SER SER B . n B 1 17 VAL 17 152 152 VAL VAL B . n B 1 18 TYR 18 153 153 TYR TYR B . n B 1 19 VAL 19 154 154 VAL VAL B . n B 1 20 GLN 20 155 155 GLN GLN B . n B 1 21 TYR 21 156 156 TYR TYR B . n B 1 22 ASP 22 157 157 ASP ASP B . n B 1 23 ASP 23 158 158 ASP ASP B . n B 1 24 ILE 24 159 159 ILE ILE B . n B 1 25 MET 25 160 160 MET MET B . n B 1 26 PHE 26 161 161 PHE PHE B . n B 1 27 PHE 27 162 162 PHE PHE B . n B 1 28 GLU 28 163 163 GLU GLU B . n B 1 29 SER 29 164 164 SER SER B . n B 1 30 SER 30 165 165 SER SER B . n B 1 31 THR 31 166 166 THR THR B . n B 1 32 LYS 32 167 167 LYS LYS B . n B 1 33 SER 33 168 168 SER SER B . n B 1 34 HIS 34 169 169 HIS HIS B . n B 1 35 ARG 35 170 170 ARG ARG B . n B 1 36 LEU 36 171 171 LEU LEU B . n B 1 37 ILE 37 172 172 ILE ILE B . n B 1 38 ALA 38 173 173 ALA ALA B . n B 1 39 HIS 39 174 174 HIS HIS B . n B 1 40 LEU 40 175 175 LEU LEU B . n B 1 41 ASP 41 176 176 ASP ASP B . n B 1 42 ASN 42 177 177 ASN ASN B . n B 1 43 ARG 43 178 178 ARG ARG B . n B 1 44 GLN 44 179 179 GLN GLN B . n B 1 45 ILE 45 180 180 ILE ILE B . n B 1 46 GLU 46 181 181 GLU GLU B . n B 1 47 PHE 47 182 182 PHE PHE B . n B 1 48 TYR 48 183 183 TYR TYR B . n B 1 49 GLY 49 184 184 GLY GLY B . n B 1 50 ASN 50 185 185 ASN ASN B . n B 1 51 LEU 51 186 186 LEU LEU B . n B 1 52 LYS 52 187 187 LYS LYS B . n B 1 53 GLU 53 188 188 GLU GLU B . n B 1 54 LEU 54 189 189 LEU LEU B . n B 1 55 SER 55 190 190 SER SER B . n B 1 56 GLN 56 191 191 GLN GLN B . n B 1 57 LEU 57 192 192 LEU LEU B . n B 1 58 ASP 58 193 193 ASP ASP B . n B 1 59 ASP 59 194 194 ASP ASP B . n B 1 60 ARG 60 195 195 ARG ARG B . n B 1 61 PHE 61 196 196 PHE PHE B . n B 1 62 PHE 62 197 197 PHE PHE B . n B 1 63 ARG 63 198 198 ARG ARG B . n B 1 64 CYS 64 199 199 CYS CYS B . n B 1 65 HIS 65 200 200 HIS HIS B . n B 1 66 ASN 66 201 201 ASN ASN B . n B 1 67 SER 67 202 202 SER SER B . n B 1 68 PHE 68 203 203 PHE PHE B . n B 1 69 VAL 69 204 204 VAL VAL B . n B 1 70 VAL 70 205 205 VAL VAL B . n B 1 71 ASN 71 206 206 ASN ASN B . n B 1 72 ARG 72 207 207 ARG ARG B . n B 1 73 HIS 73 208 208 HIS HIS B . n B 1 74 ASN 74 209 209 ASN ASN B . n B 1 75 ILE 75 210 210 ILE ILE B . n B 1 76 GLU 76 211 211 GLU GLU B . n B 1 77 SER 77 212 212 SER SER B . n B 1 78 ILE 78 213 213 ILE ILE B . n B 1 79 ASP 79 214 214 ASP ASP B . n B 1 80 SER 80 215 215 SER SER B . n B 1 81 LYS 81 216 216 LYS LYS B . n B 1 82 GLU 82 217 217 GLU GLU B . n B 1 83 ARG 83 218 218 ARG ARG B . n B 1 84 ILE 84 219 219 ILE ILE B . n B 1 85 VAL 85 220 220 VAL VAL B . n B 1 86 TYR 86 221 221 TYR TYR B . n B 1 87 PHE 87 222 222 PHE PHE B . n B 1 88 LYS 88 223 223 LYS LYS B . n B 1 89 ASN 89 224 224 ASN ASN B . n B 1 90 LYS 90 225 225 LYS LYS B . n B 1 91 GLU 91 226 226 GLU GLU B . n B 1 92 HIS 92 227 227 HIS HIS B . n B 1 93 CYS 93 228 228 CYS CYS B . n B 1 94 TYR 94 229 229 TYR TYR B . n B 1 95 ALA 95 230 230 ALA ALA B . n B 1 96 SER 96 231 231 SER SER B . n B 1 97 VAL 97 232 232 VAL VAL B . n B 1 98 ARG 98 233 233 ARG ARG B . n B 1 99 ASN 99 234 234 ASN ASN B . n B 1 100 VAL 100 235 235 VAL VAL B . n B 1 101 LYS 101 236 236 LYS LYS B . n B 1 102 LYS 102 237 237 LYS LYS B . n B 1 103 ILE 103 238 238 ILE ILE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 301 1 GOL GOL A . D 2 GOL 1 302 1 GOL GOL A . E 2 GOL 1 301 1 GOL GOL B . F 3 HOH 1 401 3 HOH HOH A . F 3 HOH 2 402 5 HOH HOH A . F 3 HOH 3 403 6 HOH HOH A . F 3 HOH 4 404 7 HOH HOH A . F 3 HOH 5 405 10 HOH HOH A . F 3 HOH 6 406 11 HOH HOH A . F 3 HOH 7 407 12 HOH HOH A . F 3 HOH 8 408 18 HOH HOH A . F 3 HOH 9 409 21 HOH HOH A . F 3 HOH 10 410 22 HOH HOH A . F 3 HOH 11 411 23 HOH HOH A . F 3 HOH 12 412 25 HOH HOH A . F 3 HOH 13 413 26 HOH HOH A . F 3 HOH 14 414 27 HOH HOH A . F 3 HOH 15 415 28 HOH HOH A . F 3 HOH 16 416 29 HOH HOH A . F 3 HOH 17 417 30 HOH HOH A . F 3 HOH 18 418 31 HOH HOH A . F 3 HOH 19 419 34 HOH HOH A . F 3 HOH 20 420 35 HOH HOH A . F 3 HOH 21 421 36 HOH HOH A . F 3 HOH 22 422 39 HOH HOH A . F 3 HOH 23 423 41 HOH HOH A . F 3 HOH 24 424 42 HOH HOH A . F 3 HOH 25 425 44 HOH HOH A . F 3 HOH 26 426 45 HOH HOH A . F 3 HOH 27 427 46 HOH HOH A . F 3 HOH 28 428 47 HOH HOH A . F 3 HOH 29 429 48 HOH HOH A . F 3 HOH 30 430 49 HOH HOH A . F 3 HOH 31 431 51 HOH HOH A . F 3 HOH 32 432 52 HOH HOH A . F 3 HOH 33 433 54 HOH HOH A . F 3 HOH 34 434 56 HOH HOH A . F 3 HOH 35 435 58 HOH HOH A . F 3 HOH 36 436 59 HOH HOH A . F 3 HOH 37 437 60 HOH HOH A . F 3 HOH 38 438 61 HOH HOH A . F 3 HOH 39 439 62 HOH HOH A . F 3 HOH 40 440 63 HOH HOH A . F 3 HOH 41 441 64 HOH HOH A . F 3 HOH 42 442 65 HOH HOH A . F 3 HOH 43 443 67 HOH HOH A . F 3 HOH 44 444 73 HOH HOH A . F 3 HOH 45 445 74 HOH HOH A . F 3 HOH 46 446 82 HOH HOH A . F 3 HOH 47 447 84 HOH HOH A . F 3 HOH 48 448 85 HOH HOH A . F 3 HOH 49 449 86 HOH HOH A . F 3 HOH 50 450 88 HOH HOH A . F 3 HOH 51 451 92 HOH HOH A . F 3 HOH 52 452 93 HOH HOH A . F 3 HOH 53 453 94 HOH HOH A . F 3 HOH 54 454 95 HOH HOH A . F 3 HOH 55 455 96 HOH HOH A . F 3 HOH 56 456 97 HOH HOH A . F 3 HOH 57 457 98 HOH HOH A . F 3 HOH 58 458 99 HOH HOH A . F 3 HOH 59 459 100 HOH HOH A . F 3 HOH 60 460 101 HOH HOH A . F 3 HOH 61 461 102 HOH HOH A . F 3 HOH 62 462 104 HOH HOH A . F 3 HOH 63 463 105 HOH HOH A . F 3 HOH 64 464 107 HOH HOH A . F 3 HOH 65 465 108 HOH HOH A . F 3 HOH 66 466 110 HOH HOH A . F 3 HOH 67 467 111 HOH HOH A . F 3 HOH 68 468 113 HOH HOH A . F 3 HOH 69 469 114 HOH HOH A . F 3 HOH 70 470 115 HOH HOH A . F 3 HOH 71 471 116 HOH HOH A . F 3 HOH 72 472 117 HOH HOH A . F 3 HOH 73 473 118 HOH HOH A . F 3 HOH 74 474 119 HOH HOH A . F 3 HOH 75 475 120 HOH HOH A . F 3 HOH 76 476 122 HOH HOH A . F 3 HOH 77 477 126 HOH HOH A . F 3 HOH 78 478 132 HOH HOH A . F 3 HOH 79 479 133 HOH HOH A . F 3 HOH 80 480 135 HOH HOH A . F 3 HOH 81 481 139 HOH HOH A . F 3 HOH 82 482 140 HOH HOH A . F 3 HOH 83 483 142 HOH HOH A . F 3 HOH 84 484 143 HOH HOH A . F 3 HOH 85 485 144 HOH HOH A . F 3 HOH 86 486 145 HOH HOH A . F 3 HOH 87 487 146 HOH HOH A . F 3 HOH 88 488 147 HOH HOH A . F 3 HOH 89 489 149 HOH HOH A . F 3 HOH 90 490 150 HOH HOH A . F 3 HOH 91 491 151 HOH HOH A . F 3 HOH 92 492 153 HOH HOH A . F 3 HOH 93 493 154 HOH HOH A . F 3 HOH 94 494 155 HOH HOH A . F 3 HOH 95 495 156 HOH HOH A . F 3 HOH 96 496 157 HOH HOH A . F 3 HOH 97 497 158 HOH HOH A . F 3 HOH 98 498 159 HOH HOH A . F 3 HOH 99 499 163 HOH HOH A . F 3 HOH 100 500 164 HOH HOH A . F 3 HOH 101 501 165 HOH HOH A . F 3 HOH 102 502 166 HOH HOH A . F 3 HOH 103 503 168 HOH HOH A . F 3 HOH 104 504 169 HOH HOH A . F 3 HOH 105 505 170 HOH HOH A . F 3 HOH 106 506 172 HOH HOH A . F 3 HOH 107 507 173 HOH HOH A . F 3 HOH 108 508 174 HOH HOH A . F 3 HOH 109 509 175 HOH HOH A . F 3 HOH 110 510 176 HOH HOH A . F 3 HOH 111 511 178 HOH HOH A . F 3 HOH 112 512 179 HOH HOH A . F 3 HOH 113 513 180 HOH HOH A . F 3 HOH 114 514 183 HOH HOH A . F 3 HOH 115 515 184 HOH HOH A . F 3 HOH 116 516 185 HOH HOH A . F 3 HOH 117 517 188 HOH HOH A . F 3 HOH 118 518 189 HOH HOH A . F 3 HOH 119 519 190 HOH HOH A . F 3 HOH 120 520 191 HOH HOH A . F 3 HOH 121 521 194 HOH HOH A . F 3 HOH 122 522 195 HOH HOH A . F 3 HOH 123 523 198 HOH HOH A . F 3 HOH 124 524 200 HOH HOH A . F 3 HOH 125 525 202 HOH HOH A . F 3 HOH 126 526 206 HOH HOH A . F 3 HOH 127 527 210 HOH HOH A . F 3 HOH 128 528 212 HOH HOH A . F 3 HOH 129 529 220 HOH HOH A . F 3 HOH 130 530 221 HOH HOH A . F 3 HOH 131 531 223 HOH HOH A . F 3 HOH 132 532 224 HOH HOH A . F 3 HOH 133 533 225 HOH HOH A . F 3 HOH 134 534 226 HOH HOH A . F 3 HOH 135 535 230 HOH HOH A . F 3 HOH 136 536 231 HOH HOH A . F 3 HOH 137 537 232 HOH HOH A . F 3 HOH 138 538 234 HOH HOH A . F 3 HOH 139 539 235 HOH HOH A . F 3 HOH 140 540 236 HOH HOH A . F 3 HOH 141 541 237 HOH HOH A . F 3 HOH 142 542 238 HOH HOH A . F 3 HOH 143 543 240 HOH HOH A . F 3 HOH 144 544 241 HOH HOH A . F 3 HOH 145 545 242 HOH HOH A . F 3 HOH 146 546 243 HOH HOH A . F 3 HOH 147 547 245 HOH HOH A . F 3 HOH 148 548 247 HOH HOH A . F 3 HOH 149 549 249 HOH HOH A . F 3 HOH 150 550 251 HOH HOH A . F 3 HOH 151 551 252 HOH HOH A . F 3 HOH 152 552 256 HOH HOH A . G 3 HOH 1 401 1 HOH HOH B . G 3 HOH 2 402 2 HOH HOH B . G 3 HOH 3 403 4 HOH HOH B . G 3 HOH 4 404 8 HOH HOH B . G 3 HOH 5 405 9 HOH HOH B . G 3 HOH 6 406 13 HOH HOH B . G 3 HOH 7 407 14 HOH HOH B . G 3 HOH 8 408 15 HOH HOH B . G 3 HOH 9 409 16 HOH HOH B . G 3 HOH 10 410 17 HOH HOH B . G 3 HOH 11 411 19 HOH HOH B . G 3 HOH 12 412 20 HOH HOH B . G 3 HOH 13 413 24 HOH HOH B . G 3 HOH 14 414 32 HOH HOH B . G 3 HOH 15 415 33 HOH HOH B . G 3 HOH 16 416 37 HOH HOH B . G 3 HOH 17 417 38 HOH HOH B . G 3 HOH 18 418 40 HOH HOH B . G 3 HOH 19 419 43 HOH HOH B . G 3 HOH 20 420 50 HOH HOH B . G 3 HOH 21 421 53 HOH HOH B . G 3 HOH 22 422 55 HOH HOH B . G 3 HOH 23 423 57 HOH HOH B . G 3 HOH 24 424 66 HOH HOH B . G 3 HOH 25 425 68 HOH HOH B . G 3 HOH 26 426 69 HOH HOH B . G 3 HOH 27 427 70 HOH HOH B . G 3 HOH 28 428 71 HOH HOH B . G 3 HOH 29 429 72 HOH HOH B . G 3 HOH 30 430 75 HOH HOH B . G 3 HOH 31 431 76 HOH HOH B . G 3 HOH 32 432 77 HOH HOH B . G 3 HOH 33 433 78 HOH HOH B . G 3 HOH 34 434 79 HOH HOH B . G 3 HOH 35 435 80 HOH HOH B . G 3 HOH 36 436 81 HOH HOH B . G 3 HOH 37 437 83 HOH HOH B . G 3 HOH 38 438 87 HOH HOH B . G 3 HOH 39 439 89 HOH HOH B . G 3 HOH 40 440 90 HOH HOH B . G 3 HOH 41 441 91 HOH HOH B . G 3 HOH 42 442 103 HOH HOH B . G 3 HOH 43 443 106 HOH HOH B . G 3 HOH 44 444 109 HOH HOH B . G 3 HOH 45 445 112 HOH HOH B . G 3 HOH 46 446 121 HOH HOH B . G 3 HOH 47 447 123 HOH HOH B . G 3 HOH 48 448 124 HOH HOH B . G 3 HOH 49 449 125 HOH HOH B . G 3 HOH 50 450 127 HOH HOH B . G 3 HOH 51 451 128 HOH HOH B . G 3 HOH 52 452 129 HOH HOH B . G 3 HOH 53 453 130 HOH HOH B . G 3 HOH 54 454 131 HOH HOH B . G 3 HOH 55 455 134 HOH HOH B . G 3 HOH 56 456 136 HOH HOH B . G 3 HOH 57 457 137 HOH HOH B . G 3 HOH 58 458 138 HOH HOH B . G 3 HOH 59 459 141 HOH HOH B . G 3 HOH 60 460 148 HOH HOH B . G 3 HOH 61 461 152 HOH HOH B . G 3 HOH 62 462 160 HOH HOH B . G 3 HOH 63 463 161 HOH HOH B . G 3 HOH 64 464 162 HOH HOH B . G 3 HOH 65 465 167 HOH HOH B . G 3 HOH 66 466 171 HOH HOH B . G 3 HOH 67 467 177 HOH HOH B . G 3 HOH 68 468 181 HOH HOH B . G 3 HOH 69 469 182 HOH HOH B . G 3 HOH 70 470 186 HOH HOH B . G 3 HOH 71 471 187 HOH HOH B . G 3 HOH 72 472 193 HOH HOH B . G 3 HOH 73 473 196 HOH HOH B . G 3 HOH 74 474 197 HOH HOH B . G 3 HOH 75 475 199 HOH HOH B . G 3 HOH 76 476 201 HOH HOH B . G 3 HOH 77 477 203 HOH HOH B . G 3 HOH 78 478 204 HOH HOH B . G 3 HOH 79 479 205 HOH HOH B . G 3 HOH 80 480 207 HOH HOH B . G 3 HOH 81 481 208 HOH HOH B . G 3 HOH 82 482 209 HOH HOH B . G 3 HOH 83 483 211 HOH HOH B . G 3 HOH 84 484 213 HOH HOH B . G 3 HOH 85 485 214 HOH HOH B . G 3 HOH 86 486 215 HOH HOH B . G 3 HOH 87 487 216 HOH HOH B . G 3 HOH 88 488 217 HOH HOH B . G 3 HOH 89 489 218 HOH HOH B . G 3 HOH 90 490 219 HOH HOH B . G 3 HOH 91 491 222 HOH HOH B . G 3 HOH 92 492 227 HOH HOH B . G 3 HOH 93 493 228 HOH HOH B . G 3 HOH 94 494 229 HOH HOH B . G 3 HOH 95 495 233 HOH HOH B . G 3 HOH 96 496 239 HOH HOH B . G 3 HOH 97 497 244 HOH HOH B . G 3 HOH 98 498 246 HOH HOH B . G 3 HOH 99 499 248 HOH HOH B . G 3 HOH 100 500 250 HOH HOH B . G 3 HOH 101 501 254 HOH HOH B . G 3 HOH 102 502 255 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,F 2 1 B,E,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-12-19 2 'Structure model' 1 1 2013-01-02 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_phasing_MR.entry_id 4G4K _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 20.720 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 20.720 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 RESOLVE . ? program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 5 PHENIX 1.8_1066 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 6 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 StructureStudio . ? ? ? ? 'data collection' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 225 ? ? 80.05 -4.29 2 1 ARG B 147 ? ? -151.43 57.87 3 1 LYS B 225 ? ? 74.13 -1.67 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 136 ? A MET 1 2 1 Y 1 A ASP 137 ? A ASP 2 3 1 Y 1 A ASN 138 ? A ASN 3 4 1 Y 1 A SER 139 ? A SER 4 5 1 Y 1 A VAL 140 ? A VAL 5 6 1 Y 1 B MET 136 ? B MET 1 7 1 Y 1 B ASP 137 ? B ASP 2 8 1 Y 1 B ASN 138 ? B ASN 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TYR N N N N 318 TYR CA C N S 319 TYR C C N N 320 TYR O O N N 321 TYR CB C N N 322 TYR CG C Y N 323 TYR CD1 C Y N 324 TYR CD2 C Y N 325 TYR CE1 C Y N 326 TYR CE2 C Y N 327 TYR CZ C Y N 328 TYR OH O N N 329 TYR OXT O N N 330 TYR H H N N 331 TYR H2 H N N 332 TYR HA H N N 333 TYR HB2 H N N 334 TYR HB3 H N N 335 TYR HD1 H N N 336 TYR HD2 H N N 337 TYR HE1 H N N 338 TYR HE2 H N N 339 TYR HH H N N 340 TYR HXT H N N 341 VAL N N N N 342 VAL CA C N S 343 VAL C C N N 344 VAL O O N N 345 VAL CB C N N 346 VAL CG1 C N N 347 VAL CG2 C N N 348 VAL OXT O N N 349 VAL H H N N 350 VAL H2 H N N 351 VAL HA H N N 352 VAL HB H N N 353 VAL HG11 H N N 354 VAL HG12 H N N 355 VAL HG13 H N N 356 VAL HG21 H N N 357 VAL HG22 H N N 358 VAL HG23 H N N 359 VAL HXT H N N 360 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 SER N CA sing N N 273 SER N H sing N N 274 SER N H2 sing N N 275 SER CA C sing N N 276 SER CA CB sing N N 277 SER CA HA sing N N 278 SER C O doub N N 279 SER C OXT sing N N 280 SER CB OG sing N N 281 SER CB HB2 sing N N 282 SER CB HB3 sing N N 283 SER OG HG sing N N 284 SER OXT HXT sing N N 285 THR N CA sing N N 286 THR N H sing N N 287 THR N H2 sing N N 288 THR CA C sing N N 289 THR CA CB sing N N 290 THR CA HA sing N N 291 THR C O doub N N 292 THR C OXT sing N N 293 THR CB OG1 sing N N 294 THR CB CG2 sing N N 295 THR CB HB sing N N 296 THR OG1 HG1 sing N N 297 THR CG2 HG21 sing N N 298 THR CG2 HG22 sing N N 299 THR CG2 HG23 sing N N 300 THR OXT HXT sing N N 301 TYR N CA sing N N 302 TYR N H sing N N 303 TYR N H2 sing N N 304 TYR CA C sing N N 305 TYR CA CB sing N N 306 TYR CA HA sing N N 307 TYR C O doub N N 308 TYR C OXT sing N N 309 TYR CB CG sing N N 310 TYR CB HB2 sing N N 311 TYR CB HB3 sing N N 312 TYR CG CD1 doub Y N 313 TYR CG CD2 sing Y N 314 TYR CD1 CE1 sing Y N 315 TYR CD1 HD1 sing N N 316 TYR CD2 CE2 doub Y N 317 TYR CD2 HD2 sing N N 318 TYR CE1 CZ doub Y N 319 TYR CE1 HE1 sing N N 320 TYR CE2 CZ sing Y N 321 TYR CE2 HE2 sing N N 322 TYR CZ OH sing N N 323 TYR OH HH sing N N 324 TYR OXT HXT sing N N 325 VAL N CA sing N N 326 VAL N H sing N N 327 VAL N H2 sing N N 328 VAL CA C sing N N 329 VAL CA CB sing N N 330 VAL CA HA sing N N 331 VAL C O doub N N 332 VAL C OXT sing N N 333 VAL CB CG1 sing N N 334 VAL CB CG2 sing N N 335 VAL CB HB sing N N 336 VAL CG1 HG11 sing N N 337 VAL CG1 HG12 sing N N 338 VAL CG1 HG13 sing N N 339 VAL CG2 HG21 sing N N 340 VAL CG2 HG22 sing N N 341 VAL CG2 HG23 sing N N 342 VAL OXT HXT sing N N 343 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3BS1 _pdbx_initial_refinement_model.details 'PDB ENTRY 3BS1' #