data_4G4M
#
_entry.id 4G4M
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.287
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
PDB 4G4M
RCSB RCSB073731
WWPDB D_1000073731
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 4G3B . unspecified
PDB 4G4L . unspecified
PDB 3TWE . unspecified
PDB 3TWF . unspecified
PDB 3TWG . unspecified
#
_pdbx_database_status.entry_id 4G4M
_pdbx_database_status.status_code REL
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2012-07-16
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Buer, B.C.' 1
'Meagher, J.L.' 2
'Stuckey, J.A.' 3
'Marsh, E.N.G.' 4
#
_citation.id primary
_citation.title
;Comparison of the structures and stabilities of coiled-coil proteins containing hexafluoroleucine and t-butylalanine provides insight into the stabilizing effects of highly fluorinated amino acid side-chains.
;
_citation.journal_abbrev 'Protein Sci.'
_citation.journal_volume 21
_citation.page_first 1705
_citation.page_last 1715
_citation.year 2012
_citation.journal_id_ASTM PRCIEI
_citation.country US
_citation.journal_id_ISSN 0961-8368
_citation.journal_id_CSD 0795
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 22930450
_citation.pdbx_database_id_DOI 10.1002/pro.2150
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Buer, B.C.' 1
primary 'Meagher, J.L.' 2
primary 'Stuckey, J.A.' 3
primary 'Marsh, E.N.' 4
#
_cell.length_a 49.581
_cell.length_b 49.581
_cell.length_c 41.569
_cell.angle_alpha 90.000
_cell.angle_beta 90.000
_cell.angle_gamma 90.000
_cell.entry_id 4G4M
_cell.pdbx_unique_axis ?
_cell.Z_PDB 16
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'I 41'
_symmetry.entry_id 4G4M
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.Int_Tables_number 80
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'alpha4F3(6-13)' 3590.581 2 ? ? ? ?
2 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 2 ? ? ? ?
3 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ?
4 water nat water 18.015 28 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code 'GNADE(6FL)YKE(6FL)ED(6FL)QERLRKLRKKLRSG'
_entity_poly.pdbx_seq_one_letter_code_can GNADEXYKEXEDXQERLRKLRKKLRSG
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 ASN n
1 3 ALA n
1 4 ASP n
1 5 GLU n
1 6 6FL n
1 7 TYR n
1 8 LYS n
1 9 GLU n
1 10 6FL n
1 11 GLU n
1 12 ASP n
1 13 6FL n
1 14 GLN n
1 15 GLU n
1 16 ARG n
1 17 LEU n
1 18 ARG n
1 19 LYS n
1 20 LEU n
1 21 ARG n
1 22 LYS n
1 23 LYS n
1 24 LEU n
1 25 ARG n
1 26 SER n
1 27 GLY n
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 4G4M
_struct_ref.pdbx_db_accession 4G4M
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code GNADEXYKEXEDXQERLRKLRKKLRSG
_struct_ref.pdbx_db_isoform ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 4G4M A 1 ? 27 ? 4G4M 1 ? 27 ? 1 27
2 1 4G4M B 1 ? 27 ? 4G4M 1 ? 27 ? 1 27
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
6FL 'L-peptide linking' . "5,5,5,5',5',5'-hexafluoro-L-leucine" ? 'C6 H7 F6 N O2' 239.116
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HOH non-polymer . WATER ? 'H2 O' 18.015
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
#
_exptl.crystals_number 1
_exptl.entry_id 4G4M
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews 1.78
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 30.85
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pH 7.8
_exptl_crystal_grow.temp 293.15
_exptl_crystal_grow.pdbx_details '48% PEG600, 0.1M Tris pH 8.5, vapor diffusion, hanging drop, temperature 293.15K'
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MARMOSAIC 300 mm CCD'
_diffrn_detector.pdbx_collection_date 2011-10-13
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator 'Diamond [111]'
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.97856
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 21-ID-G'
_diffrn_source.pdbx_wavelength_list 0.97856
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 21-ID-G
#
_reflns.entry_id 4G4M
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.d_resolution_high 1.48
_reflns.d_resolution_low 50.0
_reflns.number_all ?
_reflns.number_obs 8484
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_refine.entry_id 4G4M
_refine.ls_d_res_high 1.4800
_refine.ls_d_res_low 10.0000
_refine.pdbx_ls_sigma_F 0.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_percent_reflns_obs ?
_refine.ls_number_reflns_obs 8457
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details RANDOM
_refine.details ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2553
_refine.ls_R_factor_R_work 0.2522
_refine.ls_wR_factor_R_work ?
_refine.ls_R_factor_R_free 0.3176
_refine.ls_wR_factor_R_free ?
_refine.ls_percent_reflns_R_free 4.6600
_refine.ls_number_reflns_R_free 394
_refine.ls_R_factor_R_free_error ?
_refine.B_iso_mean 30.4037
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_isotropic_thermal_model ?
_refine.aniso_B[1][1] -1.0565
_refine.aniso_B[2][2] -1.0565
_refine.aniso_B[3][3] 2.1130
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] 0.0000
_refine.aniso_B[2][3] 0.0000
_refine.correlation_coeff_Fo_to_Fc 0.9152
_refine.correlation_coeff_Fo_to_Fc_free 0.8716
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.solvent_model_details ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.overall_FOM_work_R_set ?
_refine.B_iso_max 84.260
_refine.B_iso_min 12.450
_refine.pdbx_overall_phase_error ?
_refine.occupancy_max 1.000
_refine.occupancy_min 1.000
_refine.pdbx_ls_sigma_I ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 4G4M
_refine_analyze.Luzzati_coordinate_error_obs 0.291
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.pdbx_Luzzati_d_res_high_obs ?
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 468
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 26
_refine_hist.number_atoms_solvent 28
_refine_hist.number_atoms_total 522
_refine_hist.d_res_high 1.4800
_refine_hist.d_res_low 10.0000
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
t_dihedral_angle_d 174 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION'
t_trig_c_planes 16 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION'
t_gen_planes 58 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION'
t_it 489 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION'
t_nbd 25 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION'
t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION'
t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION'
t_chiral_improper_torsion 42 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION'
t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION'
t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION'
t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION'
t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION'
t_ideal_dist_contact 524 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION'
t_bond_d 489 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION'
t_angle_deg 656 1.190 ? 2.000 HARMONIC 'X-RAY DIFFRACTION'
t_omega_torsion ? 2.490 ? ? ? 'X-RAY DIFFRACTION'
t_other_torsion ? 19.340 ? ? ? 'X-RAY DIFFRACTION'
#
_refine_ls_shell.d_res_high 1.4800
_refine_ls_shell.d_res_low 1.6600
_refine_ls_shell.pdbx_total_number_of_bins_used 5
_refine_ls_shell.percent_reflns_obs ?
_refine_ls_shell.number_reflns_R_work 2297
_refine_ls_shell.R_factor_all 0.2619
_refine_ls_shell.R_factor_R_work 0.2603
_refine_ls_shell.R_factor_R_free 0.2963
_refine_ls_shell.percent_reflns_R_free 4.2900
_refine_ls_shell.number_reflns_R_free 103
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.number_reflns_all 2400
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 4G4M
_struct.title 'Crystal structure of the de novo designed fluorinated peptide alpha4F3(6-13)'
_struct.pdbx_descriptor 'alpha4F3(6-13)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4G4M
_struct_keywords.text 'alpha helix, de novo designed, fluorinated protein, coiled-coil, DE NOVO PROTEIN'
_struct_keywords.pdbx_keywords 'DE NOVO PROTEIN'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 3 ?
E N N 3 ?
F N N 2 ?
G N N 3 ?
H N N 4 ?
I N N 4 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 GLY A 1 ? ARG A 25 ? GLY A 1 ARG A 25 1 ? 25
HELX_P HELX_P2 2 ASN B 2 ? ARG B 25 ? ASN B 2 ARG B 25 1 ? 24
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale1 covale ? ? A GLU 5 C ? ? ? 1_555 A 6FL 6 N ? ? A GLU 5 A 6FL 6 1_555 ? ? ? ? ? ? ? 1.346 ?
covale2 covale ? ? A 6FL 6 C ? ? ? 1_555 A TYR 7 N ? ? A 6FL 6 A TYR 7 1_555 ? ? ? ? ? ? ? 1.338 ?
covale3 covale ? ? A GLU 9 C ? ? ? 1_555 A 6FL 10 N ? ? A GLU 9 A 6FL 10 1_555 ? ? ? ? ? ? ? 1.355 ?
covale4 covale ? ? A 6FL 10 C ? ? ? 1_555 A GLU 11 N ? ? A 6FL 10 A GLU 11 1_555 ? ? ? ? ? ? ? 1.344 ?
covale5 covale ? ? A ASP 12 C ? ? ? 1_555 A 6FL 13 N ? ? A ASP 12 A 6FL 13 1_555 ? ? ? ? ? ? ? 1.352 ?
covale6 covale ? ? A 6FL 13 C ? ? ? 1_555 A GLN 14 N ? ? A 6FL 13 A GLN 14 1_555 ? ? ? ? ? ? ? 1.368 ?
covale7 covale ? ? B GLU 5 C ? ? ? 1_555 B 6FL 6 N ? ? B GLU 5 B 6FL 6 1_555 ? ? ? ? ? ? ? 1.335 ?
covale8 covale ? ? B 6FL 6 C ? ? ? 1_555 B TYR 7 N ? ? B 6FL 6 B TYR 7 1_555 ? ? ? ? ? ? ? 1.347 ?
covale9 covale ? ? B GLU 9 C ? ? ? 1_555 B 6FL 10 N ? ? B GLU 9 B 6FL 10 1_555 ? ? ? ? ? ? ? 1.328 ?
covale10 covale ? ? B 6FL 10 C ? ? ? 1_555 B GLU 11 N ? ? B 6FL 10 B GLU 11 1_555 ? ? ? ? ? ? ? 1.322 ?
covale11 covale ? ? B ASP 12 C ? ? ? 1_555 B 6FL 13 N ? ? B ASP 12 B 6FL 13 1_555 ? ? ? ? ? ? ? 1.347 ?
covale12 covale ? ? B 6FL 13 C ? ? ? 1_555 B GLN 14 N ? ? B 6FL 13 B GLN 14 1_555 ? ? ? ? ? ? ? 1.353 ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PG4 A 101'
AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 102'
AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 103'
AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE PG4 B 101'
AC5 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO B 102'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 4 6FL A 6 ? 6FL A 6 . ? 1_555 ?
2 AC1 4 EDO E . ? EDO A 103 . ? 6_555 ?
3 AC1 4 ALA B 3 ? ALA B 3 . ? 6_554 ?
4 AC1 4 LEU B 24 ? LEU B 24 . ? 6_555 ?
5 AC2 4 LEU A 24 ? LEU A 24 . ? 1_555 ?
6 AC2 4 EDO E . ? EDO A 103 . ? 1_556 ?
7 AC2 4 ASN B 2 ? ASN B 2 . ? 6_555 ?
8 AC2 4 6FL B 6 ? 6FL B 6 . ? 6_555 ?
9 AC3 4 ASN A 2 ? ASN A 2 . ? 1_555 ?
10 AC3 4 ALA A 3 ? ALA A 3 . ? 1_555 ?
11 AC3 4 PG4 C . ? PG4 A 101 . ? 6_555 ?
12 AC3 4 EDO D . ? EDO A 102 . ? 1_554 ?
13 AC4 5 ASP B 12 ? ASP B 12 . ? 1_555 ?
14 AC4 5 ARG B 16 ? ARG B 16 . ? 1_555 ?
15 AC4 5 LYS B 19 ? LYS B 19 . ? 1_555 ?
16 AC4 5 HOH I . ? HOH B 206 . ? 1_555 ?
17 AC4 5 HOH I . ? HOH B 215 . ? 7_454 ?
18 AC5 3 GLU B 5 ? GLU B 5 . ? 1_555 ?
19 AC5 3 GLU B 9 ? GLU B 9 . ? 1_555 ?
20 AC5 3 ARG B 25 ? ARG B 25 . ? 7_455 ?
#
_atom_sites.entry_id 4G4M
_atom_sites.fract_transf_matrix[1][1] 0.020169
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.020169
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.024056
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
F
N
O
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 1 1 GLY GLY A . n
A 1 2 ASN 2 2 2 ASN ASN A . n
A 1 3 ALA 3 3 3 ALA ALA A . n
A 1 4 ASP 4 4 4 ASP ASP A . n
A 1 5 GLU 5 5 5 GLU GLU A . n
A 1 6 6FL 6 6 6 6FL 6FL A . n
A 1 7 TYR 7 7 7 TYR TYR A . n
A 1 8 LYS 8 8 8 LYS LYS A . n
A 1 9 GLU 9 9 9 GLU GLU A . n
A 1 10 6FL 10 10 10 6FL 6FL A . n
A 1 11 GLU 11 11 11 GLU GLU A . n
A 1 12 ASP 12 12 12 ASP ASP A . n
A 1 13 6FL 13 13 13 6FL 6FL A . n
A 1 14 GLN 14 14 14 GLN GLN A . n
A 1 15 GLU 15 15 15 GLU GLU A . n
A 1 16 ARG 16 16 16 ARG ARG A . n
A 1 17 LEU 17 17 17 LEU LEU A . n
A 1 18 ARG 18 18 18 ARG ARG A . n
A 1 19 LYS 19 19 19 LYS LYS A . n
A 1 20 LEU 20 20 20 LEU LEU A . n
A 1 21 ARG 21 21 21 ARG ARG A . n
A 1 22 LYS 22 22 22 LYS LYS A . n
A 1 23 LYS 23 23 23 LYS LYS A . n
A 1 24 LEU 24 24 24 LEU LEU A . n
A 1 25 ARG 25 25 25 ARG ARG A . n
A 1 26 SER 26 26 ? ? ? A . n
A 1 27 GLY 27 27 ? ? ? A . n
B 1 1 GLY 1 1 1 GLY GLY B . n
B 1 2 ASN 2 2 2 ASN ASN B . n
B 1 3 ALA 3 3 3 ALA ALA B . n
B 1 4 ASP 4 4 4 ASP ASP B . n
B 1 5 GLU 5 5 5 GLU GLU B . n
B 1 6 6FL 6 6 6 6FL 6FL B . n
B 1 7 TYR 7 7 7 TYR TYR B . n
B 1 8 LYS 8 8 8 LYS LYS B . n
B 1 9 GLU 9 9 9 GLU GLU B . n
B 1 10 6FL 10 10 10 6FL 6FL B . n
B 1 11 GLU 11 11 11 GLU GLU B . n
B 1 12 ASP 12 12 12 ASP ASP B . n
B 1 13 6FL 13 13 13 6FL 6FL B . n
B 1 14 GLN 14 14 14 GLN GLN B . n
B 1 15 GLU 15 15 15 GLU GLU B . n
B 1 16 ARG 16 16 16 ARG ARG B . n
B 1 17 LEU 17 17 17 LEU LEU B . n
B 1 18 ARG 18 18 18 ARG ARG B . n
B 1 19 LYS 19 19 19 LYS LYS B . n
B 1 20 LEU 20 20 20 LEU LEU B . n
B 1 21 ARG 21 21 21 ARG ARG B . n
B 1 22 LYS 22 22 22 LYS LYS B . n
B 1 23 LYS 23 23 23 LYS LYS B . n
B 1 24 LEU 24 24 24 LEU LEU B . n
B 1 25 ARG 25 25 25 ARG ARG B . n
B 1 26 SER 26 26 ? ? ? B . n
B 1 27 GLY 27 27 ? ? ? B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PG4 1 101 1 PG4 PG4 A .
D 3 EDO 1 102 1 EDO EDO A .
E 3 EDO 1 103 1 EDO EDO A .
F 2 PG4 1 101 1 PG4 PG4 B .
G 3 EDO 1 102 1 EDO EDO B .
H 4 HOH 1 201 1 HOH HOH A .
H 4 HOH 2 202 1 HOH HOH A .
H 4 HOH 3 203 3 HOH HOH A .
H 4 HOH 4 204 7 HOH HOH A .
H 4 HOH 5 205 8 HOH HOH A .
H 4 HOH 6 206 9 HOH HOH A .
H 4 HOH 7 207 10 HOH HOH A .
H 4 HOH 8 208 11 HOH HOH A .
H 4 HOH 9 209 13 HOH HOH A .
H 4 HOH 10 210 17 HOH HOH A .
H 4 HOH 11 211 18 HOH HOH A .
H 4 HOH 12 212 27 HOH HOH A .
I 4 HOH 1 201 2 HOH HOH B .
I 4 HOH 2 202 4 HOH HOH B .
I 4 HOH 3 203 5 HOH HOH B .
I 4 HOH 4 204 6 HOH HOH B .
I 4 HOH 5 205 12 HOH HOH B .
I 4 HOH 6 206 14 HOH HOH B .
I 4 HOH 7 207 15 HOH HOH B .
I 4 HOH 8 208 16 HOH HOH B .
I 4 HOH 9 209 19 HOH HOH B .
I 4 HOH 10 210 20 HOH HOH B .
I 4 HOH 11 211 21 HOH HOH B .
I 4 HOH 12 212 22 HOH HOH B .
I 4 HOH 13 213 23 HOH HOH B .
I 4 HOH 14 214 24 HOH HOH B .
I 4 HOH 15 215 25 HOH HOH B .
I 4 HOH 16 216 26 HOH HOH B .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details tetrameric
_pdbx_struct_assembly.oligomeric_count 4
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 6_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2012-10-31
2 'Structure model' 1 1 2012-11-21
3 'Structure model' 1 2 2017-11-15
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Refinement description'
#
_pdbx_audit_revision_category.ordinal 1
_pdbx_audit_revision_category.revision_ordinal 3
_pdbx_audit_revision_category.data_content_type 'Structure model'
_pdbx_audit_revision_category.category software
#
loop_
_pdbx_refine_tls.pdbx_refine_id
_pdbx_refine_tls.id
_pdbx_refine_tls.details
_pdbx_refine_tls.method
_pdbx_refine_tls.origin_x
_pdbx_refine_tls.origin_y
_pdbx_refine_tls.origin_z
_pdbx_refine_tls.T[1][1]
_pdbx_refine_tls.T[2][2]
_pdbx_refine_tls.T[3][3]
_pdbx_refine_tls.T[1][2]
_pdbx_refine_tls.T[1][3]
_pdbx_refine_tls.T[2][3]
_pdbx_refine_tls.L[1][1]
_pdbx_refine_tls.L[2][2]
_pdbx_refine_tls.L[3][3]
_pdbx_refine_tls.L[1][2]
_pdbx_refine_tls.L[1][3]
_pdbx_refine_tls.L[2][3]
_pdbx_refine_tls.S[1][1]
_pdbx_refine_tls.S[2][2]
_pdbx_refine_tls.S[3][3]
_pdbx_refine_tls.S[1][2]
_pdbx_refine_tls.S[1][3]
_pdbx_refine_tls.S[2][3]
_pdbx_refine_tls.S[2][1]
_pdbx_refine_tls.S[3][1]
_pdbx_refine_tls.S[3][2]
'X-RAY DIFFRACTION' 1 ? refined 5.3005 -5.3552 -18.1618 -0.0605 -0.0454 -0.0498 -0.0037 -0.0153 0.0404 3.7064 3.1665 9.5236
0.9509 -2.2563 -1.6355 -0.0128 0.0797 -0.0668 0.0694 0.1052 -0.0862 0.1422 -0.0523 -0.1492
'X-RAY DIFFRACTION' 2 ? refined -4.2049 -5.7823 -13.6684 -0.0107 -0.0721 -0.0697 0.0184 -0.0189 -0.0155 5.3922 3.4578 2.8773
-0.6502 -4.2817 0.0430 -0.0045 -0.0211 0.0256 -0.0329 0.0490 0.0150 0.0208 -0.0428 0.0457
#
loop_
_pdbx_refine_tls_group.pdbx_refine_id
_pdbx_refine_tls_group.id
_pdbx_refine_tls_group.refine_tls_id
_pdbx_refine_tls_group.beg_auth_asym_id
_pdbx_refine_tls_group.beg_auth_seq_id
_pdbx_refine_tls_group.end_auth_asym_id
_pdbx_refine_tls_group.end_auth_seq_id
_pdbx_refine_tls_group.selection_details
_pdbx_refine_tls_group.beg_label_asym_id
_pdbx_refine_tls_group.beg_label_seq_id
_pdbx_refine_tls_group.end_label_asym_id
_pdbx_refine_tls_group.end_label_seq_id
_pdbx_refine_tls_group.selection
'X-RAY DIFFRACTION' 1 1 A 1 A 25 '{ A|* }' ? ? ? ? ?
'X-RAY DIFFRACTION' 2 2 B 1 B 25 '{ B|* }' ? ? ? ? ?
#
loop_
_software.pdbx_ordinal
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction'
http://www.hkl-xray.com/ ? ?
2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling'
http://www.hkl-xray.com/ ? ?
3 BUSTER-TNT 'BUSTER 2.8.0' ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement
http://www.globalphasing.com/buster/ ? ?
4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ?
5 HKL-2000 . ? ? ? ? 'data collection' ? ?
?
6 HKL-2000 . ? ? ? ? 'data reduction' ? ?
?
7 HKL-2000 . ? ? ? ? 'data scaling' ? ?
?
8 PHASER . ? ? ? ? phasing ? ?
?
9 BUSTER 1.6.0 ? ? ? ? refinement ? ?
?
#
_pdbx_validate_torsion.id 1
_pdbx_validate_torsion.PDB_model_num 1
_pdbx_validate_torsion.auth_comp_id ASN
_pdbx_validate_torsion.auth_asym_id B
_pdbx_validate_torsion.auth_seq_id 2
_pdbx_validate_torsion.PDB_ins_code ?
_pdbx_validate_torsion.label_alt_id ?
_pdbx_validate_torsion.phi -150.80
_pdbx_validate_torsion.psi -6.37
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A LYS 23 ? CG ? A LYS 23 CG
2 1 Y 1 A LYS 23 ? CD ? A LYS 23 CD
3 1 Y 1 A LYS 23 ? CE ? A LYS 23 CE
4 1 Y 1 A LYS 23 ? NZ ? A LYS 23 NZ
5 1 N 1 A PG4 101 ? O1 ? C PG4 1 O1
6 1 N 1 A PG4 101 ? C1 ? C PG4 1 C1
7 1 N 1 A PG4 101 ? C2 ? C PG4 1 C2
8 1 N 1 A PG4 101 ? O2 ? C PG4 1 O2
9 1 N 1 A PG4 101 ? C3 ? C PG4 1 C3
10 1 N 1 A PG4 101 ? C4 ? C PG4 1 C4
11 1 N 1 B PG4 101 ? O1 ? F PG4 1 O1
12 1 N 1 B PG4 101 ? C1 ? F PG4 1 C1
13 1 N 1 B PG4 101 ? C2 ? F PG4 1 C2
14 1 N 1 B PG4 101 ? O2 ? F PG4 1 O2
15 1 N 1 B PG4 101 ? C3 ? F PG4 1 C3
16 1 N 1 B PG4 101 ? C4 ? F PG4 1 C4
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A SER 26 ? A SER 26
2 1 Y 1 A GLY 27 ? A GLY 27
3 1 Y 1 B SER 26 ? B SER 26
4 1 Y 1 B GLY 27 ? B GLY 27
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'TETRAETHYLENE GLYCOL' PG4
3 1,2-ETHANEDIOL EDO
4 water HOH
#