data_4G4M # _entry.id 4G4M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4G4M RCSB RCSB073731 WWPDB D_1000073731 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4G3B . unspecified PDB 4G4L . unspecified PDB 3TWE . unspecified PDB 3TWF . unspecified PDB 3TWG . unspecified # _pdbx_database_status.entry_id 4G4M _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-07-16 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Buer, B.C.' 1 'Meagher, J.L.' 2 'Stuckey, J.A.' 3 'Marsh, E.N.G.' 4 # _citation.id primary _citation.title ;Comparison of the structures and stabilities of coiled-coil proteins containing hexafluoroleucine and t-butylalanine provides insight into the stabilizing effects of highly fluorinated amino acid side-chains. ; _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 21 _citation.page_first 1705 _citation.page_last 1715 _citation.year 2012 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22930450 _citation.pdbx_database_id_DOI 10.1002/pro.2150 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Buer, B.C.' 1 primary 'Meagher, J.L.' 2 primary 'Stuckey, J.A.' 3 primary 'Marsh, E.N.' 4 # _cell.length_a 49.581 _cell.length_b 49.581 _cell.length_c 41.569 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4G4M _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 41' _symmetry.entry_id 4G4M _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 80 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'alpha4F3(6-13)' 3590.581 2 ? ? ? ? 2 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 2 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 4 water nat water 18.015 28 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GNADE(6FL)YKE(6FL)ED(6FL)QERLRKLRKKLRSG' _entity_poly.pdbx_seq_one_letter_code_can GNADEXYKEXEDXQERLRKLRKKLRSG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASN n 1 3 ALA n 1 4 ASP n 1 5 GLU n 1 6 6FL n 1 7 TYR n 1 8 LYS n 1 9 GLU n 1 10 6FL n 1 11 GLU n 1 12 ASP n 1 13 6FL n 1 14 GLN n 1 15 GLU n 1 16 ARG n 1 17 LEU n 1 18 ARG n 1 19 LYS n 1 20 LEU n 1 21 ARG n 1 22 LYS n 1 23 LYS n 1 24 LEU n 1 25 ARG n 1 26 SER n 1 27 GLY n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4G4M _struct_ref.pdbx_db_accession 4G4M _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code GNADEXYKEXEDXQERLRKLRKKLRSG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4G4M A 1 ? 27 ? 4G4M 1 ? 27 ? 1 27 2 1 4G4M B 1 ? 27 ? 4G4M 1 ? 27 ? 1 27 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6FL 'L-peptide linking' . "5,5,5,5',5',5'-hexafluoro-L-leucine" ? 'C6 H7 F6 N O2' 239.116 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.crystals_number 1 _exptl.entry_id 4G4M _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.78 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 30.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.8 _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.pdbx_details '48% PEG600, 0.1M Tris pH 8.5, vapor diffusion, hanging drop, temperature 293.15K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2011-10-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Diamond [111]' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97856 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-G' _diffrn_source.pdbx_wavelength_list 0.97856 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-G # _reflns.entry_id 4G4M _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.48 _reflns.d_resolution_low 50.0 _reflns.number_all ? _reflns.number_obs 8484 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4G4M _refine.ls_d_res_high 1.4800 _refine.ls_d_res_low 10.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs ? _refine.ls_number_reflns_obs 8457 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2553 _refine.ls_R_factor_R_work 0.2522 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.3176 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.6600 _refine.ls_number_reflns_R_free 394 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 30.4037 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.0565 _refine.aniso_B[2][2] -1.0565 _refine.aniso_B[3][3] 2.1130 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9152 _refine.correlation_coeff_Fo_to_Fc_free 0.8716 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 84.260 _refine.B_iso_min 12.450 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4G4M _refine_analyze.Luzzati_coordinate_error_obs 0.291 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 468 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 522 _refine_hist.d_res_high 1.4800 _refine_hist.d_res_low 10.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 174 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 16 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 58 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 489 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd 25 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 42 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 524 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 489 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 656 1.190 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 2.490 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 19.340 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.4800 _refine_ls_shell.d_res_low 1.6600 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 2297 _refine_ls_shell.R_factor_all 0.2619 _refine_ls_shell.R_factor_R_work 0.2603 _refine_ls_shell.R_factor_R_free 0.2963 _refine_ls_shell.percent_reflns_R_free 4.2900 _refine_ls_shell.number_reflns_R_free 103 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2400 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4G4M _struct.title 'Crystal structure of the de novo designed fluorinated peptide alpha4F3(6-13)' _struct.pdbx_descriptor 'alpha4F3(6-13)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4G4M _struct_keywords.text 'alpha helix, de novo designed, fluorinated protein, coiled-coil, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? ARG A 25 ? GLY A 1 ARG A 25 1 ? 25 HELX_P HELX_P2 2 ASN B 2 ? ARG B 25 ? ASN B 2 ARG B 25 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLU 5 C ? ? ? 1_555 A 6FL 6 N ? ? A GLU 5 A 6FL 6 1_555 ? ? ? ? ? ? ? 1.346 ? covale2 covale ? ? A 6FL 6 C ? ? ? 1_555 A TYR 7 N ? ? A 6FL 6 A TYR 7 1_555 ? ? ? ? ? ? ? 1.338 ? covale3 covale ? ? A GLU 9 C ? ? ? 1_555 A 6FL 10 N ? ? A GLU 9 A 6FL 10 1_555 ? ? ? ? ? ? ? 1.355 ? covale4 covale ? ? A 6FL 10 C ? ? ? 1_555 A GLU 11 N ? ? A 6FL 10 A GLU 11 1_555 ? ? ? ? ? ? ? 1.344 ? covale5 covale ? ? A ASP 12 C ? ? ? 1_555 A 6FL 13 N ? ? A ASP 12 A 6FL 13 1_555 ? ? ? ? ? ? ? 1.352 ? covale6 covale ? ? A 6FL 13 C ? ? ? 1_555 A GLN 14 N ? ? A 6FL 13 A GLN 14 1_555 ? ? ? ? ? ? ? 1.368 ? covale7 covale ? ? B GLU 5 C ? ? ? 1_555 B 6FL 6 N ? ? B GLU 5 B 6FL 6 1_555 ? ? ? ? ? ? ? 1.335 ? covale8 covale ? ? B 6FL 6 C ? ? ? 1_555 B TYR 7 N ? ? B 6FL 6 B TYR 7 1_555 ? ? ? ? ? ? ? 1.347 ? covale9 covale ? ? B GLU 9 C ? ? ? 1_555 B 6FL 10 N ? ? B GLU 9 B 6FL 10 1_555 ? ? ? ? ? ? ? 1.328 ? covale10 covale ? ? B 6FL 10 C ? ? ? 1_555 B GLU 11 N ? ? B 6FL 10 B GLU 11 1_555 ? ? ? ? ? ? ? 1.322 ? covale11 covale ? ? B ASP 12 C ? ? ? 1_555 B 6FL 13 N ? ? B ASP 12 B 6FL 13 1_555 ? ? ? ? ? ? ? 1.347 ? covale12 covale ? ? B 6FL 13 C ? ? ? 1_555 B GLN 14 N ? ? B 6FL 13 B GLN 14 1_555 ? ? ? ? ? ? ? 1.353 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PG4 A 101' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 102' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 103' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE PG4 B 101' AC5 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 6FL A 6 ? 6FL A 6 . ? 1_555 ? 2 AC1 4 EDO E . ? EDO A 103 . ? 6_555 ? 3 AC1 4 ALA B 3 ? ALA B 3 . ? 6_554 ? 4 AC1 4 LEU B 24 ? LEU B 24 . ? 6_555 ? 5 AC2 4 LEU A 24 ? LEU A 24 . ? 1_555 ? 6 AC2 4 EDO E . ? EDO A 103 . ? 1_556 ? 7 AC2 4 ASN B 2 ? ASN B 2 . ? 6_555 ? 8 AC2 4 6FL B 6 ? 6FL B 6 . ? 6_555 ? 9 AC3 4 ASN A 2 ? ASN A 2 . ? 1_555 ? 10 AC3 4 ALA A 3 ? ALA A 3 . ? 1_555 ? 11 AC3 4 PG4 C . ? PG4 A 101 . ? 6_555 ? 12 AC3 4 EDO D . ? EDO A 102 . ? 1_554 ? 13 AC4 5 ASP B 12 ? ASP B 12 . ? 1_555 ? 14 AC4 5 ARG B 16 ? ARG B 16 . ? 1_555 ? 15 AC4 5 LYS B 19 ? LYS B 19 . ? 1_555 ? 16 AC4 5 HOH I . ? HOH B 206 . ? 1_555 ? 17 AC4 5 HOH I . ? HOH B 215 . ? 7_454 ? 18 AC5 3 GLU B 5 ? GLU B 5 . ? 1_555 ? 19 AC5 3 GLU B 9 ? GLU B 9 . ? 1_555 ? 20 AC5 3 ARG B 25 ? ARG B 25 . ? 7_455 ? # _atom_sites.entry_id 4G4M _atom_sites.fract_transf_matrix[1][1] 0.020169 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020169 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024056 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 6FL 6 6 6 6FL 6FL A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 6FL 10 10 10 6FL 6FL A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 6FL 13 13 13 6FL 6FL A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 SER 26 26 ? ? ? A . n A 1 27 GLY 27 27 ? ? ? A . n B 1 1 GLY 1 1 1 GLY GLY B . n B 1 2 ASN 2 2 2 ASN ASN B . n B 1 3 ALA 3 3 3 ALA ALA B . n B 1 4 ASP 4 4 4 ASP ASP B . n B 1 5 GLU 5 5 5 GLU GLU B . n B 1 6 6FL 6 6 6 6FL 6FL B . n B 1 7 TYR 7 7 7 TYR TYR B . n B 1 8 LYS 8 8 8 LYS LYS B . n B 1 9 GLU 9 9 9 GLU GLU B . n B 1 10 6FL 10 10 10 6FL 6FL B . n B 1 11 GLU 11 11 11 GLU GLU B . n B 1 12 ASP 12 12 12 ASP ASP B . n B 1 13 6FL 13 13 13 6FL 6FL B . n B 1 14 GLN 14 14 14 GLN GLN B . n B 1 15 GLU 15 15 15 GLU GLU B . n B 1 16 ARG 16 16 16 ARG ARG B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 ARG 18 18 18 ARG ARG B . n B 1 19 LYS 19 19 19 LYS LYS B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 ARG 21 21 21 ARG ARG B . n B 1 22 LYS 22 22 22 LYS LYS B . n B 1 23 LYS 23 23 23 LYS LYS B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 ARG 25 25 25 ARG ARG B . n B 1 26 SER 26 26 ? ? ? B . n B 1 27 GLY 27 27 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PG4 1 101 1 PG4 PG4 A . D 3 EDO 1 102 1 EDO EDO A . E 3 EDO 1 103 1 EDO EDO A . F 2 PG4 1 101 1 PG4 PG4 B . G 3 EDO 1 102 1 EDO EDO B . H 4 HOH 1 201 1 HOH HOH A . H 4 HOH 2 202 1 HOH HOH A . H 4 HOH 3 203 3 HOH HOH A . H 4 HOH 4 204 7 HOH HOH A . H 4 HOH 5 205 8 HOH HOH A . H 4 HOH 6 206 9 HOH HOH A . H 4 HOH 7 207 10 HOH HOH A . H 4 HOH 8 208 11 HOH HOH A . H 4 HOH 9 209 13 HOH HOH A . H 4 HOH 10 210 17 HOH HOH A . H 4 HOH 11 211 18 HOH HOH A . H 4 HOH 12 212 27 HOH HOH A . I 4 HOH 1 201 2 HOH HOH B . I 4 HOH 2 202 4 HOH HOH B . I 4 HOH 3 203 5 HOH HOH B . I 4 HOH 4 204 6 HOH HOH B . I 4 HOH 5 205 12 HOH HOH B . I 4 HOH 6 206 14 HOH HOH B . I 4 HOH 7 207 15 HOH HOH B . I 4 HOH 8 208 16 HOH HOH B . I 4 HOH 9 209 19 HOH HOH B . I 4 HOH 10 210 20 HOH HOH B . I 4 HOH 11 211 21 HOH HOH B . I 4 HOH 12 212 22 HOH HOH B . I 4 HOH 13 213 23 HOH HOH B . I 4 HOH 14 214 24 HOH HOH B . I 4 HOH 15 215 25 HOH HOH B . I 4 HOH 16 216 26 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-31 2 'Structure model' 1 1 2012-11-21 3 'Structure model' 1 2 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 5.3005 -5.3552 -18.1618 -0.0605 -0.0454 -0.0498 -0.0037 -0.0153 0.0404 3.7064 3.1665 9.5236 0.9509 -2.2563 -1.6355 -0.0128 0.0797 -0.0668 0.0694 0.1052 -0.0862 0.1422 -0.0523 -0.1492 'X-RAY DIFFRACTION' 2 ? refined -4.2049 -5.7823 -13.6684 -0.0107 -0.0721 -0.0697 0.0184 -0.0189 -0.0155 5.3922 3.4578 2.8773 -0.6502 -4.2817 0.0430 -0.0045 -0.0211 0.0256 -0.0329 0.0490 0.0150 0.0208 -0.0428 0.0457 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 25 '{ A|* }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 1 B 25 '{ B|* }' ? ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 BUSTER-TNT 'BUSTER 2.8.0' ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 8 PHASER . ? ? ? ? phasing ? ? ? 9 BUSTER 1.6.0 ? ? ? ? refinement ? ? ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 2 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -150.80 _pdbx_validate_torsion.psi -6.37 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 23 ? CG ? A LYS 23 CG 2 1 Y 1 A LYS 23 ? CD ? A LYS 23 CD 3 1 Y 1 A LYS 23 ? CE ? A LYS 23 CE 4 1 Y 1 A LYS 23 ? NZ ? A LYS 23 NZ 5 1 N 1 A PG4 101 ? O1 ? C PG4 1 O1 6 1 N 1 A PG4 101 ? C1 ? C PG4 1 C1 7 1 N 1 A PG4 101 ? C2 ? C PG4 1 C2 8 1 N 1 A PG4 101 ? O2 ? C PG4 1 O2 9 1 N 1 A PG4 101 ? C3 ? C PG4 1 C3 10 1 N 1 A PG4 101 ? C4 ? C PG4 1 C4 11 1 N 1 B PG4 101 ? O1 ? F PG4 1 O1 12 1 N 1 B PG4 101 ? C1 ? F PG4 1 C1 13 1 N 1 B PG4 101 ? C2 ? F PG4 1 C2 14 1 N 1 B PG4 101 ? O2 ? F PG4 1 O2 15 1 N 1 B PG4 101 ? C3 ? F PG4 1 C3 16 1 N 1 B PG4 101 ? C4 ? F PG4 1 C4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 26 ? A SER 26 2 1 Y 1 A GLY 27 ? A GLY 27 3 1 Y 1 B SER 26 ? B SER 26 4 1 Y 1 B GLY 27 ? B GLY 27 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'TETRAETHYLENE GLYCOL' PG4 3 1,2-ETHANEDIOL EDO 4 water HOH #