HEADER ISOMERASE, PROTEIN BINDING 17-JUL-12 4G50 TITLE CRYSTAL STRUCTURE OF A SMT FUSION PEPTIDYL-PROLYL CIS-TRANS ISOMERASE TITLE 2 WITH SURFACE MUTATION D44G FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED TITLE 3 WITH CJ168 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN SMT3, PEPTIDYL-PROLYL CIS-TRANS COMPND 3 ISOMERASE; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: Q12306 RESIDUES 13-98, Q3JK38 RESIDUES 2-113; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE, BURKHOLDERIA SOURCE 3 PSEUDOMALLEI; SOURCE 4 ORGANISM_TAXID: 559292, 320372; SOURCE 5 STRAIN: 1710B, S288C; SOURCE 6 GENE: BURPS1710B_A0907, SMT3, YDR510W, D9719.15; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28-HISSMT KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, ISOMERASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 13-SEP-23 4G50 1 REMARK SEQADV REVDAT 4 23-AUG-17 4G50 1 SOURCE REMARK REVDAT 3 19-MAR-14 4G50 1 REMARK REVDAT 2 12-MAR-14 4G50 1 JRNL REVDAT 1 01-AUG-12 4G50 0 JRNL AUTH D.W.BEGLEY,D.FOX,D.JENNER,C.JULI,P.G.PIERCE,J.ABENDROTH, JRNL AUTH 2 M.MURUTHI,K.SAFFORD,V.ANDERSON,K.ATKINS,S.R.BARNES,S.O.MOEN, JRNL AUTH 3 A.C.RAYMOND,R.STACY,P.J.MYLER,B.L.STAKER,N.J.HARMER, JRNL AUTH 4 I.H.NORVILLE,U.HOLZGRABE,M.SARKAR-TYSON,T.E.EDWARDS, JRNL AUTH 5 D.D.LORIMER JRNL TITL A STRUCTURAL BIOLOGY APPROACH ENABLES THE DEVELOPMENT OF JRNL TITL 2 ANTIMICROBIALS TARGETING BACTERIAL IMMUNOPHILINS. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 58 1458 2014 JRNL REFN ISSN 0066-4804 JRNL PMID 24366729 JRNL DOI 10.1128/AAC.01875-13 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 32845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1662 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2261 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 325 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 1.03000 REMARK 3 B13 (A**2) : 0.87000 REMARK 3 B23 (A**2) : -0.09000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.108 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3025 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2833 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4092 ; 1.533 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6510 ; 1.071 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 391 ; 6.499 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;31.123 ;24.394 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;13.512 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.587 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 446 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3495 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 681 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -77 A 1 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5573 17.6914 49.1084 REMARK 3 T TENSOR REMARK 3 T11: 0.0442 T22: 0.0260 REMARK 3 T33: 0.0158 T12: -0.0160 REMARK 3 T13: 0.0180 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.2512 L22: 1.6561 REMARK 3 L33: 0.1449 L12: -0.2653 REMARK 3 L13: 0.0176 L23: 0.1375 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: 0.0659 S13: 0.0021 REMARK 3 S21: -0.0479 S22: -0.0267 S23: -0.0213 REMARK 3 S31: 0.0489 S32: -0.0190 S33: 0.0432 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4992 -0.8600 66.8389 REMARK 3 T TENSOR REMARK 3 T11: 0.0067 T22: 0.0054 REMARK 3 T33: 0.0162 T12: -0.0027 REMARK 3 T13: -0.0060 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.7455 L22: 0.5410 REMARK 3 L33: 0.5601 L12: 0.0313 REMARK 3 L13: -0.3636 L23: 0.0538 REMARK 3 S TENSOR REMARK 3 S11: -0.0380 S12: -0.0209 S13: 0.0353 REMARK 3 S21: -0.0117 S22: 0.0315 S23: -0.0531 REMARK 3 S31: 0.0201 S32: 0.0283 S33: 0.0065 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -76 B 1 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7059 2.4634 30.0901 REMARK 3 T TENSOR REMARK 3 T11: 0.0236 T22: 0.0555 REMARK 3 T33: 0.0238 T12: 0.0099 REMARK 3 T13: 0.0155 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.2479 L22: 1.8766 REMARK 3 L33: 0.2971 L12: -0.1177 REMARK 3 L13: 0.2525 L23: 0.0566 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: -0.0182 S13: 0.0295 REMARK 3 S21: 0.0576 S22: -0.0739 S23: 0.0558 REMARK 3 S31: 0.0221 S32: 0.0063 S33: 0.0627 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0443 -16.5931 12.4477 REMARK 3 T TENSOR REMARK 3 T11: 0.0089 T22: 0.0150 REMARK 3 T33: 0.0086 T12: 0.0074 REMARK 3 T13: -0.0021 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.7347 L22: 0.4365 REMARK 3 L33: 0.8904 L12: 0.1424 REMARK 3 L13: -0.0909 L23: -0.0919 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: -0.0414 S13: 0.0475 REMARK 3 S21: 0.0175 S22: 0.0393 S23: 0.0243 REMARK 3 S31: -0.0252 S32: -0.0751 S33: -0.0099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4G50 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : SI(220) ASYMMETRIC CUT SINGLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32845 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 37.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4FN2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INTERNAL TRACKING NUMBER 233897A9. REMARK 280 PUCK VKT6-9, JCSG_A8 OPTIMIZATION. 50MM AMMONIUM FORMATE, 24.55% REMARK 280 PEG 3,350, 10% ETHYLENE GLYCOL. BUPSA.00130.A.D214, 20.00 MG/ML, REMARK 280 CJ168 (EBSI2861), PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -95 REMARK 465 GLY A -94 REMARK 465 HIS A -93 REMARK 465 HIS A -92 REMARK 465 HIS A -91 REMARK 465 HIS A -90 REMARK 465 HIS A -89 REMARK 465 HIS A -88 REMARK 465 SER A -87 REMARK 465 GLY A -86 REMARK 465 GLU A -85 REMARK 465 VAL A -84 REMARK 465 LYS A -83 REMARK 465 PRO A -82 REMARK 465 GLU A -81 REMARK 465 VAL A -80 REMARK 465 LYS A -79 REMARK 465 PRO A -78 REMARK 465 MET B -95 REMARK 465 GLY B -94 REMARK 465 HIS B -93 REMARK 465 HIS B -92 REMARK 465 HIS B -91 REMARK 465 HIS B -90 REMARK 465 HIS B -89 REMARK 465 HIS B -88 REMARK 465 SER B -87 REMARK 465 GLY B -86 REMARK 465 GLU B -85 REMARK 465 VAL B -84 REMARK 465 LYS B -83 REMARK 465 PRO B -82 REMARK 465 GLU B -81 REMARK 465 VAL B -80 REMARK 465 LYS B -79 REMARK 465 PRO B -78 REMARK 465 GLU B -77 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -39 CG CD OE1 OE2 REMARK 470 ASP A -37 CG OD1 OD2 REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 470 THR B -76 OG1 CG2 REMARK 470 LYS B -71 CG CD CE NZ REMARK 470 LYS B -60 CG CD CE NZ REMARK 470 LYS B -57 CG CD CE NZ REMARK 470 LYS B -44 CG CD CE NZ REMARK 470 LYS B -40 CG CD CE NZ REMARK 470 GLU B -39 CG CD OE1 OE2 REMARK 470 ASP B -37 CG OD1 OD2 REMARK 470 GLU B -14 CG CD OE1 OE2 REMARK 470 ILE B -2 CG1 CG2 CD1 REMARK 470 ARG B 24 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B -51 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP B -13 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -66 -67.83 -109.00 REMARK 500 ASN A 50 57.68 39.94 REMARK 500 VAL A 97 -43.61 -134.86 REMARK 500 ASN B 50 44.84 30.16 REMARK 500 VAL B 97 -41.80 -134.35 REMARK 500 VAL B 97 -38.69 -135.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 861 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 861 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KEO RELATED DB: PDB REMARK 900 RELATED ID: 2L2S RELATED DB: PDB REMARK 900 RELATED ID: 3VAW RELATED DB: PDB REMARK 900 RELATED ID: 3UQB RELATED DB: PDB REMARK 900 RELATED ID: 3UQA RELATED DB: PDB REMARK 900 RELATED ID: 2KO7 RELATED DB: PDB REMARK 900 RELATED ID: 4DZ3 RELATED DB: PDB REMARK 900 RELATED ID: 4DZ2 RELATED DB: PDB REMARK 900 RELATED ID: 3UF8 RELATED DB: PDB REMARK 900 RELATED ID: 4FN2 RELATED DB: PDB REMARK 900 RELATED ID: SSGCID-BUPSA.00130.A RELATED DB: TARGETTRACK DBREF 4G50 A -85 0 UNP Q12306 SMT3_YEAST 13 98 DBREF 4G50 A 2 113 UNP Q3JK38 Q3JK38_BURP1 2 113 DBREF 4G50 B -85 0 UNP Q12306 SMT3_YEAST 13 98 DBREF 4G50 B 2 113 UNP Q3JK38 Q3JK38_BURP1 2 113 SEQADV 4G50 MET A -95 UNP Q12306 EXPRESSION TAG SEQADV 4G50 GLY A -94 UNP Q12306 EXPRESSION TAG SEQADV 4G50 HIS A -93 UNP Q12306 EXPRESSION TAG SEQADV 4G50 HIS A -92 UNP Q12306 EXPRESSION TAG SEQADV 4G50 HIS A -91 UNP Q12306 EXPRESSION TAG SEQADV 4G50 HIS A -90 UNP Q12306 EXPRESSION TAG SEQADV 4G50 HIS A -89 UNP Q12306 EXPRESSION TAG SEQADV 4G50 HIS A -88 UNP Q12306 EXPRESSION TAG SEQADV 4G50 SER A -87 UNP Q12306 EXPRESSION TAG SEQADV 4G50 GLY A -86 UNP Q12306 EXPRESSION TAG SEQADV 4G50 SER A 1 UNP Q12306 LINKER SEQADV 4G50 GLY A 44 UNP Q3JK38 ASP 44 ENGINEERED MUTATION SEQADV 4G50 MET B -95 UNP Q12306 EXPRESSION TAG SEQADV 4G50 GLY B -94 UNP Q12306 EXPRESSION TAG SEQADV 4G50 HIS B -93 UNP Q12306 EXPRESSION TAG SEQADV 4G50 HIS B -92 UNP Q12306 EXPRESSION TAG SEQADV 4G50 HIS B -91 UNP Q12306 EXPRESSION TAG SEQADV 4G50 HIS B -90 UNP Q12306 EXPRESSION TAG SEQADV 4G50 HIS B -89 UNP Q12306 EXPRESSION TAG SEQADV 4G50 HIS B -88 UNP Q12306 EXPRESSION TAG SEQADV 4G50 SER B -87 UNP Q12306 EXPRESSION TAG SEQADV 4G50 GLY B -86 UNP Q12306 EXPRESSION TAG SEQADV 4G50 SER B 1 UNP Q12306 LINKER SEQADV 4G50 GLY B 44 UNP Q3JK38 ASP 44 ENGINEERED MUTATION SEQRES 1 A 209 MET GLY HIS HIS HIS HIS HIS HIS SER GLY GLU VAL LYS SEQRES 2 A 209 PRO GLU VAL LYS PRO GLU THR HIS ILE ASN LEU LYS VAL SEQRES 3 A 209 SER ASP GLY SER SER GLU ILE PHE PHE LYS ILE LYS LYS SEQRES 4 A 209 THR THR PRO LEU ARG ARG LEU MET GLU ALA PHE ALA LYS SEQRES 5 A 209 ARG GLN GLY LYS GLU MET ASP SER LEU ARG PHE LEU TYR SEQRES 6 A 209 ASP GLY ILE ARG ILE GLN ALA ASP GLN THR PRO GLU ASP SEQRES 7 A 209 LEU ASP MET GLU ASP ASN ASP ILE ILE GLU ALA HIS ARG SEQRES 8 A 209 GLU GLN ILE GLY GLY SER THR VAL VAL THR THR GLU SER SEQRES 9 A 209 GLY LEU LYS TYR GLU ASP LEU THR GLU GLY SER GLY ALA SEQRES 10 A 209 GLU ALA ARG ALA GLY GLN THR VAL SER VAL HIS TYR THR SEQRES 11 A 209 GLY TRP LEU THR ASP GLY GLN LYS PHE GLY SER SER LYS SEQRES 12 A 209 ASP ARG ASN ASP PRO PHE ALA PHE VAL LEU GLY GLY GLY SEQRES 13 A 209 MET VAL ILE LYS GLY TRP ASP GLU GLY VAL GLN GLY MET SEQRES 14 A 209 LYS VAL GLY GLY VAL ARG ARG LEU THR ILE PRO PRO GLN SEQRES 15 A 209 LEU GLY TYR GLY ALA ARG GLY ALA GLY GLY VAL ILE PRO SEQRES 16 A 209 PRO ASN ALA THR LEU VAL PHE GLU VAL GLU LEU LEU ASP SEQRES 17 A 209 VAL SEQRES 1 B 209 MET GLY HIS HIS HIS HIS HIS HIS SER GLY GLU VAL LYS SEQRES 2 B 209 PRO GLU VAL LYS PRO GLU THR HIS ILE ASN LEU LYS VAL SEQRES 3 B 209 SER ASP GLY SER SER GLU ILE PHE PHE LYS ILE LYS LYS SEQRES 4 B 209 THR THR PRO LEU ARG ARG LEU MET GLU ALA PHE ALA LYS SEQRES 5 B 209 ARG GLN GLY LYS GLU MET ASP SER LEU ARG PHE LEU TYR SEQRES 6 B 209 ASP GLY ILE ARG ILE GLN ALA ASP GLN THR PRO GLU ASP SEQRES 7 B 209 LEU ASP MET GLU ASP ASN ASP ILE ILE GLU ALA HIS ARG SEQRES 8 B 209 GLU GLN ILE GLY GLY SER THR VAL VAL THR THR GLU SER SEQRES 9 B 209 GLY LEU LYS TYR GLU ASP LEU THR GLU GLY SER GLY ALA SEQRES 10 B 209 GLU ALA ARG ALA GLY GLN THR VAL SER VAL HIS TYR THR SEQRES 11 B 209 GLY TRP LEU THR ASP GLY GLN LYS PHE GLY SER SER LYS SEQRES 12 B 209 ASP ARG ASN ASP PRO PHE ALA PHE VAL LEU GLY GLY GLY SEQRES 13 B 209 MET VAL ILE LYS GLY TRP ASP GLU GLY VAL GLN GLY MET SEQRES 14 B 209 LYS VAL GLY GLY VAL ARG ARG LEU THR ILE PRO PRO GLN SEQRES 15 B 209 LEU GLY TYR GLY ALA ARG GLY ALA GLY GLY VAL ILE PRO SEQRES 16 B 209 PRO ASN ALA THR LEU VAL PHE GLU VAL GLU LEU LEU ASP SEQRES 17 B 209 VAL HET 861 A 201 34 HET FMT A 202 3 HET FMT A 203 3 HET 861 B 201 34 HET EDO B 202 4 HET FMT B 203 3 HET FMT B 204 3 HET EDO B 205 4 HETNAM 861 3-(3,4,5-TRIMETHOXYPHENYL)PROPYL (2S)-1- HETNAM 2 861 (BENZYLSULFONYL)PIPERIDINE-2-CARBOXYLATE HETNAM FMT FORMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 861 2(C25 H33 N O7 S) FORMUL 4 FMT 4(C H2 O2) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 11 HOH *325(H2 O) HELIX 1 1 LEU A -53 GLN A -42 1 12 HELIX 2 2 GLU A -39 ASP A -37 5 3 HELIX 3 3 ILE A 63 VAL A 70 1 8 HELIX 4 4 PRO A 84 GLY A 88 5 5 HELIX 5 5 LEU B -53 GLN B -42 1 12 HELIX 6 6 GLU B -39 ASP B -37 5 3 HELIX 7 7 ILE B 63 VAL B 70 1 8 HELIX 8 8 PRO B 84 GLY B 88 5 5 SHEET 1 A 5 GLU A -64 LYS A -58 0 SHEET 2 A 5 HIS A -75 SER A -69 -1 N ILE A -74 O ILE A -59 SHEET 3 A 5 ASP A -11 ARG A -5 1 O ALA A -7 N SER A -69 SHEET 4 A 5 LEU A -35 TYR A -31 -1 N LEU A -32 O GLU A -8 SHEET 5 A 5 ILE A -28 ARG A -27 -1 O ILE A -28 N TYR A -31 SHEET 1 B 6 VAL A 3 THR A 5 0 SHEET 2 B 6 LYS A 11 THR A 16 -1 O TYR A 12 N VAL A 4 SHEET 3 B 6 VAL A 78 ILE A 83 -1 O ARG A 80 N GLU A 13 SHEET 4 B 6 LEU A 104 ASP A 112 -1 O LEU A 104 N ILE A 83 SHEET 5 B 6 THR A 28 LEU A 37 -1 N HIS A 32 O GLU A 109 SHEET 6 B 6 LYS A 42 SER A 45 -1 O GLY A 44 N GLY A 35 SHEET 1 C 6 VAL A 3 THR A 5 0 SHEET 2 C 6 LYS A 11 THR A 16 -1 O TYR A 12 N VAL A 4 SHEET 3 C 6 VAL A 78 ILE A 83 -1 O ARG A 80 N GLU A 13 SHEET 4 C 6 LEU A 104 ASP A 112 -1 O LEU A 104 N ILE A 83 SHEET 5 C 6 THR A 28 LEU A 37 -1 N HIS A 32 O GLU A 109 SHEET 6 C 6 PHE A 53 VAL A 56 -1 O PHE A 53 N VAL A 31 SHEET 1 D 5 GLU B -64 ILE B -59 0 SHEET 2 D 5 ILE B -74 SER B -69 -1 N ILE B -74 O ILE B -59 SHEET 3 D 5 ILE B -10 ARG B -5 1 O ALA B -7 N SER B -69 SHEET 4 D 5 LEU B -35 TYR B -31 -1 N ARG B -34 O HIS B -6 SHEET 5 D 5 ILE B -28 ARG B -27 -1 O ILE B -28 N TYR B -31 SHEET 1 E 6 VAL B 3 THR B 5 0 SHEET 2 E 6 LYS B 11 THR B 16 -1 O TYR B 12 N VAL B 4 SHEET 3 E 6 VAL B 78 ILE B 83 -1 O ARG B 80 N GLU B 13 SHEET 4 E 6 LEU B 104 ASP B 112 -1 O LEU B 104 N ILE B 83 SHEET 5 E 6 THR B 28 LEU B 37 -1 N HIS B 32 O GLU B 109 SHEET 6 E 6 LYS B 42 SER B 45 -1 O PHE B 43 N GLY B 35 SHEET 1 F 6 VAL B 3 THR B 5 0 SHEET 2 F 6 LYS B 11 THR B 16 -1 O TYR B 12 N VAL B 4 SHEET 3 F 6 VAL B 78 ILE B 83 -1 O ARG B 80 N GLU B 13 SHEET 4 F 6 LEU B 104 ASP B 112 -1 O LEU B 104 N ILE B 83 SHEET 5 F 6 THR B 28 LEU B 37 -1 N HIS B 32 O GLU B 109 SHEET 6 F 6 PHE B 53 VAL B 56 -1 O PHE B 53 N VAL B 31 SITE 1 AC1 16 TYR A 33 PHE A 43 PHE A 53 GLY A 60 SITE 2 AC1 16 MET A 61 VAL A 62 ILE A 63 TRP A 66 SITE 3 AC1 16 GLY A 88 TYR A 89 ILE A 98 PHE A 106 SITE 4 AC1 16 ALA B 25 GLY B 26 VAL B 56 MET B 61 SITE 1 AC2 5 ARG A 92 GLY A 93 ALA A 94 HOH A 316 SITE 2 AC2 5 SER B 8 SITE 1 AC3 4 GLU A 68 GLN A 71 ARG A 79 HOH A 413 SITE 1 AC4 17 ALA A 25 GLY A 26 LEU A 57 GLY A 58 SITE 2 AC4 17 GLY A 59 TYR B 33 PHE B 43 PHE B 53 SITE 3 AC4 17 MET B 61 VAL B 62 ILE B 63 TRP B 66 SITE 4 AC4 17 TYR B 89 VAL B 97 ILE B 98 PHE B 106 SITE 5 AC4 17 HOH B 398 SITE 1 AC5 3 TYR B 12 GLU B 68 GLN B 71 SITE 1 AC6 3 GLY B 58 GLN B 71 HOH B 359 SITE 1 AC7 5 SER A 8 ARG B 92 GLY B 93 ALA B 94 SITE 2 AC7 5 HOH B 334 SITE 1 AC8 5 LYS B 64 GLN B 86 GLY B 88 GLY B 90 SITE 2 AC8 5 HOH B 434 CRYST1 33.630 35.110 75.150 91.54 99.90 97.23 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029735 0.003773 0.005382 0.00000 SCALE2 0.000000 0.028710 0.001427 0.00000 SCALE3 0.000000 0.000000 0.013524 0.00000