data_4G5G # _entry.id 4G5G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4G5G pdb_00004g5g 10.2210/pdb4g5g/pdb RCSB RCSB073761 ? ? WWPDB D_1000073761 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4G5G _pdbx_database_status.recvd_initial_deposition_date 2012-07-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Palestrant, D.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Antibiotic optimization and chemical structure stabilization of thiomuracin A.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 55 _citation.page_first 6934 _citation.page_last 6941 _citation.year 2012 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22812377 _citation.pdbx_database_id_DOI 10.1021/jm300783c # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'LaMarche, M.J.' 1 ? primary 'Leeds, J.A.' 2 ? primary 'Dzink-Fox, J.' 3 ? primary 'Gangl, E.' 4 ? primary 'Krastel, P.' 5 ? primary 'Neckermann, G.' 6 ? primary 'Palestrant, D.' 7 ? primary 'Patane, M.A.' 8 ? primary 'Rann, E.M.' 9 ? primary 'Tiamfook, S.' 10 ? primary 'Yu, D.' 11 ? # _cell.entry_id 4G5G _cell.length_a 80.305 _cell.length_b 123.577 _cell.length_c 45.092 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4G5G _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Elongation factor Tu 1' 43324.465 1 ? ? ? ? 2 polymer syn 'thiomuracin A derivative' 1376.542 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 6 water nat water 18.015 117 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'EF-Tu 1, P-43' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHV DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ YDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVG EEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRH TPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG ; ;MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHV DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ YDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVG EEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRH TPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG ; A ? 2 'polypeptide(L)' no yes 'S(BB9)N(BB6)(H14)(BB9)Y(05N)(BB9)(BB9)(MH6)(BB9)(NH2)' SCNCFCYPCCSCX I ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 LYS n 1 4 GLU n 1 5 LYS n 1 6 PHE n 1 7 GLU n 1 8 ARG n 1 9 THR n 1 10 LYS n 1 11 PRO n 1 12 HIS n 1 13 VAL n 1 14 ASN n 1 15 VAL n 1 16 GLY n 1 17 THR n 1 18 ILE n 1 19 GLY n 1 20 HIS n 1 21 VAL n 1 22 ASP n 1 23 HIS n 1 24 GLY n 1 25 LYS n 1 26 THR n 1 27 THR n 1 28 LEU n 1 29 THR n 1 30 ALA n 1 31 ALA n 1 32 ILE n 1 33 THR n 1 34 THR n 1 35 VAL n 1 36 LEU n 1 37 ALA n 1 38 LYS n 1 39 THR n 1 40 TYR n 1 41 GLY n 1 42 GLY n 1 43 ALA n 1 44 ALA n 1 45 ARG n 1 46 ALA n 1 47 PHE n 1 48 ASP n 1 49 GLN n 1 50 ILE n 1 51 ASP n 1 52 ASN n 1 53 ALA n 1 54 PRO n 1 55 GLU n 1 56 GLU n 1 57 LYS n 1 58 ALA n 1 59 ARG n 1 60 GLY n 1 61 ILE n 1 62 THR n 1 63 ILE n 1 64 ASN n 1 65 THR n 1 66 SER n 1 67 HIS n 1 68 VAL n 1 69 GLU n 1 70 TYR n 1 71 ASP n 1 72 THR n 1 73 PRO n 1 74 THR n 1 75 ARG n 1 76 HIS n 1 77 TYR n 1 78 ALA n 1 79 HIS n 1 80 VAL n 1 81 ASP n 1 82 CYS n 1 83 PRO n 1 84 GLY n 1 85 HIS n 1 86 ALA n 1 87 ASP n 1 88 TYR n 1 89 VAL n 1 90 LYS n 1 91 ASN n 1 92 MET n 1 93 ILE n 1 94 THR n 1 95 GLY n 1 96 ALA n 1 97 ALA n 1 98 GLN n 1 99 MET n 1 100 ASP n 1 101 GLY n 1 102 ALA n 1 103 ILE n 1 104 LEU n 1 105 VAL n 1 106 VAL n 1 107 ALA n 1 108 ALA n 1 109 THR n 1 110 ASP n 1 111 GLY n 1 112 PRO n 1 113 MET n 1 114 PRO n 1 115 GLN n 1 116 THR n 1 117 ARG n 1 118 GLU n 1 119 HIS n 1 120 ILE n 1 121 LEU n 1 122 LEU n 1 123 GLY n 1 124 ARG n 1 125 GLN n 1 126 VAL n 1 127 GLY n 1 128 VAL n 1 129 PRO n 1 130 TYR n 1 131 ILE n 1 132 ILE n 1 133 VAL n 1 134 PHE n 1 135 LEU n 1 136 ASN n 1 137 LYS n 1 138 CYS n 1 139 ASP n 1 140 MET n 1 141 VAL n 1 142 ASP n 1 143 ASP n 1 144 GLU n 1 145 GLU n 1 146 LEU n 1 147 LEU n 1 148 GLU n 1 149 LEU n 1 150 VAL n 1 151 GLU n 1 152 MET n 1 153 GLU n 1 154 VAL n 1 155 ARG n 1 156 GLU n 1 157 LEU n 1 158 LEU n 1 159 SER n 1 160 GLN n 1 161 TYR n 1 162 ASP n 1 163 PHE n 1 164 PRO n 1 165 GLY n 1 166 ASP n 1 167 ASP n 1 168 THR n 1 169 PRO n 1 170 ILE n 1 171 VAL n 1 172 ARG n 1 173 GLY n 1 174 SER n 1 175 ALA n 1 176 LEU n 1 177 LYS n 1 178 ALA n 1 179 LEU n 1 180 GLU n 1 181 GLY n 1 182 ASP n 1 183 ALA n 1 184 GLU n 1 185 TRP n 1 186 GLU n 1 187 ALA n 1 188 LYS n 1 189 ILE n 1 190 LEU n 1 191 GLU n 1 192 LEU n 1 193 ALA n 1 194 GLY n 1 195 PHE n 1 196 LEU n 1 197 ASP n 1 198 SER n 1 199 TYR n 1 200 ILE n 1 201 PRO n 1 202 GLU n 1 203 PRO n 1 204 GLU n 1 205 ARG n 1 206 ALA n 1 207 ILE n 1 208 ASP n 1 209 LYS n 1 210 PRO n 1 211 PHE n 1 212 LEU n 1 213 LEU n 1 214 PRO n 1 215 ILE n 1 216 GLU n 1 217 ASP n 1 218 VAL n 1 219 PHE n 1 220 SER n 1 221 ILE n 1 222 SER n 1 223 GLY n 1 224 ARG n 1 225 GLY n 1 226 THR n 1 227 VAL n 1 228 VAL n 1 229 THR n 1 230 GLY n 1 231 ARG n 1 232 VAL n 1 233 GLU n 1 234 ARG n 1 235 GLY n 1 236 ILE n 1 237 ILE n 1 238 LYS n 1 239 VAL n 1 240 GLY n 1 241 GLU n 1 242 GLU n 1 243 VAL n 1 244 GLU n 1 245 ILE n 1 246 VAL n 1 247 GLY n 1 248 ILE n 1 249 LYS n 1 250 GLU n 1 251 THR n 1 252 GLN n 1 253 LYS n 1 254 SER n 1 255 THR n 1 256 CYS n 1 257 THR n 1 258 GLY n 1 259 VAL n 1 260 GLU n 1 261 MET n 1 262 PHE n 1 263 ARG n 1 264 LYS n 1 265 LEU n 1 266 LEU n 1 267 ASP n 1 268 GLU n 1 269 GLY n 1 270 ARG n 1 271 ALA n 1 272 GLY n 1 273 GLU n 1 274 ASN n 1 275 VAL n 1 276 GLY n 1 277 VAL n 1 278 LEU n 1 279 LEU n 1 280 ARG n 1 281 GLY n 1 282 ILE n 1 283 LYS n 1 284 ARG n 1 285 GLU n 1 286 GLU n 1 287 ILE n 1 288 GLU n 1 289 ARG n 1 290 GLY n 1 291 GLN n 1 292 VAL n 1 293 LEU n 1 294 ALA n 1 295 LYS n 1 296 PRO n 1 297 GLY n 1 298 THR n 1 299 ILE n 1 300 LYS n 1 301 PRO n 1 302 HIS n 1 303 THR n 1 304 LYS n 1 305 PHE n 1 306 GLU n 1 307 SER n 1 308 GLU n 1 309 VAL n 1 310 TYR n 1 311 ILE n 1 312 LEU n 1 313 SER n 1 314 LYS n 1 315 ASP n 1 316 GLU n 1 317 GLY n 1 318 GLY n 1 319 ARG n 1 320 HIS n 1 321 THR n 1 322 PRO n 1 323 PHE n 1 324 PHE n 1 325 LYS n 1 326 GLY n 1 327 TYR n 1 328 ARG n 1 329 PRO n 1 330 GLN n 1 331 PHE n 1 332 TYR n 1 333 PHE n 1 334 ARG n 1 335 THR n 1 336 THR n 1 337 ASP n 1 338 VAL n 1 339 THR n 1 340 GLY n 1 341 THR n 1 342 ILE n 1 343 GLU n 1 344 LEU n 1 345 PRO n 1 346 GLU n 1 347 GLY n 1 348 VAL n 1 349 GLU n 1 350 MET n 1 351 VAL n 1 352 MET n 1 353 PRO n 1 354 GLY n 1 355 ASP n 1 356 ASN n 1 357 ILE n 1 358 LYS n 1 359 MET n 1 360 VAL n 1 361 VAL n 1 362 THR n 1 363 LEU n 1 364 ILE n 1 365 HIS n 1 366 PRO n 1 367 ILE n 1 368 ALA n 1 369 MET n 1 370 ASP n 1 371 ASP n 1 372 GLY n 1 373 LEU n 1 374 ARG n 1 375 PHE n 1 376 ALA n 1 377 ILE n 1 378 ARG n 1 379 GLU n 1 380 GLY n 1 381 GLY n 1 382 ARG n 1 383 THR n 1 384 VAL n 1 385 GLY n 1 386 ALA n 1 387 GLY n 1 388 VAL n 1 389 VAL n 1 390 ALA n 1 391 LYS n 1 392 VAL n 1 393 LEU n 1 394 GLY n 2 1 SER n 2 2 BB9 n 2 3 ASN n 2 4 BB6 n 2 5 H14 n 2 6 BB9 n 2 7 TYR n 2 8 05N n 2 9 BB9 n 2 10 BB9 n 2 11 MH6 n 2 12 BB9 n 2 13 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'tufA, b3339, JW3301' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP EFTU1_ECOLI 1 ;KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDC PGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEE VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTP FFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG ; 3 P0CE47 ? 2 PDB 4G5G 2 ? ? 4G5G ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4G5G A 3 ? 394 ? P0CE47 3 ? 394 ? 2 393 2 2 4G5G I 1 ? 13 ? 4G5G 900 ? 912 ? 900 912 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4G5G MET A 1 ? UNP P0CE47 ? ? 'expression tag' 0 1 1 4G5G ALA A 2 ? UNP P0CE47 ? ? 'expression tag' 1 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 05N 'L-peptide linking' n '(3R,4R)-4-hydroxy-3-methyl-L-proline' ? 'C6 H11 N O3' 145.156 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BB6 'peptide linking' n '(2Z)-2-amino-3-sulfanylbut-2-enoic acid' ? 'C4 H7 N O2 S' 133.169 BB9 'peptide linking' n '(2Z)-2-amino-3-sulfanylprop-2-enoic acid' ? 'C3 H5 N O2 S' 119.142 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 H14 'L-peptide linking' n '(2S,3R)-BETA-HYDROXY-PHENYLALANINE' ;BETA-HYDROXY-PHENYLALANINE; THREO-BETA-HYDROXY-L-PHENYLALANINE; (BETAS)-BETA-HYDROXY-L-PHENYLALANINE; L-THREO-3-PHENYLSERINE; L-THREO-BETA-PHENYLSERINE; 3-HYDROXY-L-PHENYLALANINE ; 'C9 H11 N O3' 181.189 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MH6 'peptide linking' n '3-hydroxy-2-iminopropanoic acid' ? 'C3 H5 N O3' 103.077 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4G5G _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.50 _exptl_crystal.density_percent_sol 50.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.23 _exptl_crystal_grow.pdbx_details '0.1M Tris, 0.2M MGSO4, 24% PEG3350 , VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 8.23' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2007-03-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator SI _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.00000 1.0 2 1.0 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_wavelength 1.00000 _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 4G5G _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.3 _reflns.number_obs 21195 _reflns.number_all 21195 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4G5G _refine.ls_number_reflns_obs 21195 _refine.ls_number_reflns_all 21195 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 2.3 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all .212 _refine.ls_R_factor_R_work .212 _refine.ls_R_factor_R_free .258 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 952 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 1D8T _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3099 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 117 _refine_hist.number_atoms_total 3251 _refine_hist.d_res_high 2.3 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d 0.009 ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg 1.6 ? ? ? ? 'X-RAY DIFFRACTION' # _struct.entry_id 4G5G _struct.title 'ef-tu (Escherichia coli) complexed with nvp-ldu796' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4G5G _struct_keywords.pdbx_keywords translation/antibiotic _struct_keywords.text 'ELONGATION FACTOR, translation-antibiotic complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 5 ? G N N 6 ? H N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 24 ? GLY A 41 ? GLY A 23 GLY A 40 1 ? 18 HELX_P HELX_P2 2 ALA A 46 ? ASN A 52 ? ALA A 45 ASN A 51 1 ? 7 HELX_P HELX_P3 3 GLY A 84 ? GLY A 95 ? GLY A 83 GLY A 94 1 ? 12 HELX_P HELX_P4 4 MET A 113 ? GLY A 127 ? MET A 112 GLY A 126 1 ? 15 HELX_P HELX_P5 5 GLU A 145 ? TYR A 161 ? GLU A 144 TYR A 160 1 ? 17 HELX_P HELX_P6 6 SER A 174 ? GLU A 180 ? SER A 173 GLU A 179 1 ? 7 HELX_P HELX_P7 7 ASP A 182 ? ILE A 200 ? ASP A 181 ILE A 199 1 ? 19 HELX_P HELX_P8 8 ARG A 205 ? LYS A 209 ? ARG A 204 LYS A 208 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B SER 1 C ? ? ? 1_555 B BB9 2 N ? ? I SER 900 I BB9 901 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale one ? B SER 1 C ? ? ? 1_555 B BB9 2 SG ? ? I SER 900 I BB9 901 1_555 ? ? ? ? ? ? ? 1.754 ? ? covale3 covale one ? B SER 1 CA ? ? ? 1_555 B BB9 10 C ? ? I SER 900 I BB9 909 1_555 ? ? ? ? ? ? ? 1.419 ? ? covale4 covale one ? B SER 1 CB ? ? ? 1_555 B MH6 11 CB ? ? I SER 900 I MH6 910 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale5 covale both ? B BB9 2 C ? ? ? 1_555 B ASN 3 N ? ? I BB9 901 I ASN 902 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale6 covale both ? B ASN 3 C ? ? ? 1_555 B BB6 4 SG ? ? I ASN 902 I BB6 903 1_555 ? ? ? ? ? ? ? 1.770 ? ? covale7 covale both ? B H14 5 C ? ? ? 1_555 B BB9 6 N ? ? I H14 904 I BB9 905 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale8 covale one ? B H14 5 C ? ? ? 1_555 B BB9 6 SG ? ? I H14 904 I BB9 905 1_555 ? ? ? ? ? ? ? 1.763 ? ? covale9 covale both ? B BB9 6 C ? ? ? 1_555 B TYR 7 N ? ? I BB9 905 I TYR 906 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale10 covale both ? B TYR 7 C ? ? ? 1_555 B 05N 8 N ? ? I TYR 906 I 05N 907 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale11 covale both ? B 05N 8 C ? ? ? 1_555 B BB9 9 N ? ? I 05N 907 I BB9 908 1_555 ? ? ? ? ? ? ? 1.297 ? ? covale12 covale one ? B 05N 8 C ? ? ? 1_555 B BB9 9 SG ? ? I 05N 907 I BB9 908 1_555 ? ? ? ? ? ? ? 1.764 ? ? covale13 covale both ? B BB9 9 C ? ? ? 1_555 B BB9 10 N ? ? I BB9 908 I BB9 909 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale14 covale one ? B BB9 9 C ? ? ? 1_555 B BB9 10 SG ? ? I BB9 908 I BB9 909 1_555 ? ? ? ? ? ? ? 1.742 ? ? covale15 covale both ? B BB9 10 C ? ? ? 1_555 B MH6 11 N ? ? I BB9 909 I MH6 910 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale16 covale both ? B MH6 11 C ? ? ? 1_555 B BB9 12 N ? ? I MH6 910 I BB9 911 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale17 covale one ? B MH6 11 C ? ? ? 1_555 B BB9 12 SG ? ? I MH6 910 I BB9 911 1_555 ? ? ? ? ? ? ? 1.770 ? ? covale18 covale both ? B BB9 12 C ? ? ? 1_555 B NH2 13 N ? ? I BB9 911 I NH2 912 1_555 ? ? ? ? ? ? ? 1.328 ? ? metalc1 metalc ? ? A THR 26 OG1 ? ? ? 1_555 C MG . MG ? ? A THR 25 A MG 501 1_555 ? ? ? ? ? ? ? 2.246 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 D GDP . O2B ? ? A MG 501 A GDP 502 1_555 ? ? ? ? ? ? ? 2.314 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 501 A HOH 601 1_555 ? ? ? ? ? ? ? 2.349 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 501 A HOH 602 1_555 ? ? ? ? ? ? ? 2.405 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 501 A HOH 615 1_555 ? ? ? ? ? ? ? 2.194 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 501 A HOH 616 1_555 ? ? ? ? ? ? ? 2.419 ? ? metalc7 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 503 A HOH 653 1_555 ? ? ? ? ? ? ? 2.411 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 503 A HOH 654 1_555 ? ? ? ? ? ? ? 2.330 ? ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 503 A HOH 681 1_555 ? ? ? ? ? ? ? 2.437 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 7 ? D ? 5 ? E ? 2 ? F ? 7 ? G ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel F 4 5 ? anti-parallel F 5 6 ? anti-parallel F 6 7 ? anti-parallel G 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 66 ? ASP A 71 ? SER A 65 ASP A 70 A 2 HIS A 76 ? ASP A 81 ? HIS A 75 ASP A 80 A 3 HIS A 12 ? ILE A 18 ? HIS A 11 ILE A 17 A 4 ALA A 102 ? ALA A 107 ? ALA A 101 ALA A 106 A 5 ILE A 131 ? ASN A 136 ? ILE A 130 ASN A 135 A 6 ILE A 170 ? ARG A 172 ? ILE A 169 ARG A 171 B 1 GLU A 55 ? LYS A 57 ? GLU A 54 LYS A 56 B 2 THR A 62 ? ASN A 64 ? THR A 61 ASN A 63 C 1 LEU A 212 ? PRO A 214 ? LEU A 211 PRO A 213 C 2 VAL A 292 ? ALA A 294 ? VAL A 291 ALA A 293 C 3 GLU A 242 ? VAL A 246 ? GLU A 241 VAL A 245 C 4 GLN A 252 ? MET A 261 ? GLN A 251 MET A 260 C 5 ASN A 274 ? LEU A 279 ? ASN A 273 LEU A 278 C 6 GLY A 225 ? ARG A 231 ? GLY A 224 ARG A 230 C 7 VAL A 218 ? ILE A 221 ? VAL A 217 ILE A 220 D 1 LEU A 212 ? PRO A 214 ? LEU A 211 PRO A 213 D 2 VAL A 292 ? ALA A 294 ? VAL A 291 ALA A 293 D 3 GLU A 242 ? VAL A 246 ? GLU A 241 VAL A 245 D 4 GLN A 252 ? MET A 261 ? GLN A 251 MET A 260 D 5 LYS A 264 ? LEU A 266 ? LYS A 263 LEU A 265 E 1 ILE A 236 ? LYS A 238 ? ILE A 235 LYS A 237 E 2 GLU A 268 ? ARG A 270 ? GLU A 267 ARG A 269 F 1 LYS A 300 ? ILE A 311 ? LYS A 299 ILE A 310 F 2 ASN A 356 ? MET A 369 ? ASN A 355 MET A 368 F 3 THR A 336 ? GLU A 343 ? THR A 335 GLU A 342 F 4 GLN A 330 ? PHE A 333 ? GLN A 329 PHE A 332 F 5 ARG A 374 ? GLU A 379 ? ARG A 373 GLU A 378 F 6 ARG A 382 ? GLY A 394 ? ARG A 381 GLY A 393 F 7 LYS A 300 ? ILE A 311 ? LYS A 299 ILE A 310 G 1 PHE A 323 ? PHE A 324 ? PHE A 322 PHE A 323 G 2 MET A 350 ? VAL A 351 ? MET A 349 VAL A 350 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 68 ? N VAL A 67 O HIS A 79 ? O HIS A 78 A 2 3 O ALA A 78 ? O ALA A 77 N VAL A 15 ? N VAL A 14 A 3 4 N GLY A 16 ? N GLY A 15 O ILE A 103 ? O ILE A 102 A 4 5 N LEU A 104 ? N LEU A 103 O ILE A 132 ? O ILE A 131 A 5 6 N VAL A 133 ? N VAL A 132 O VAL A 171 ? O VAL A 170 B 1 2 N GLU A 56 ? N GLU A 55 O ILE A 63 ? O ILE A 62 C 1 2 N LEU A 213 ? N LEU A 212 O LEU A 293 ? O LEU A 292 C 2 3 O ALA A 294 ? O ALA A 293 N GLU A 244 ? N GLU A 243 C 3 4 N ILE A 245 ? N ILE A 244 O GLN A 252 ? O GLN A 251 C 4 5 N GLY A 258 ? N GLY A 257 O LEU A 278 ? O LEU A 277 C 5 6 O VAL A 277 ? O VAL A 276 N VAL A 228 ? N VAL A 227 C 6 7 O VAL A 227 ? O VAL A 226 N PHE A 219 ? N PHE A 218 D 1 2 N LEU A 213 ? N LEU A 212 O LEU A 293 ? O LEU A 292 D 2 3 O ALA A 294 ? O ALA A 293 N GLU A 244 ? N GLU A 243 D 3 4 N ILE A 245 ? N ILE A 244 O GLN A 252 ? O GLN A 251 D 4 5 N VAL A 259 ? N VAL A 258 O LEU A 266 ? O LEU A 265 E 1 2 N ILE A 237 ? N ILE A 236 O GLY A 269 ? O GLY A 268 F 1 2 N THR A 303 ? N THR A 302 O LEU A 363 ? O LEU A 362 F 2 3 O THR A 362 ? O THR A 361 N THR A 341 ? N THR A 340 F 3 4 O VAL A 338 ? O VAL A 337 N PHE A 331 ? N PHE A 330 F 4 5 N TYR A 332 ? N TYR A 331 O ALA A 376 ? O ALA A 375 F 5 6 N PHE A 375 ? N PHE A 374 O GLY A 387 ? O GLY A 386 F 6 7 O LYS A 391 ? O LYS A 390 N GLU A 306 ? N GLU A 305 G 1 2 N PHE A 323 ? N PHE A 322 O VAL A 351 ? O VAL A 350 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 501 ? 7 'BINDING SITE FOR RESIDUE MG A 501' AC2 Software A GDP 502 ? 19 'BINDING SITE FOR RESIDUE GDP A 502' AC3 Software A MG 503 ? 8 'BINDING SITE FOR RESIDUE MG A 503' AC4 Software A SO4 504 ? 5 'BINDING SITE FOR RESIDUE SO4 A 504' AC5 Software ? ? ? ? 18 'BINDING SITE FOR CHAIN I OF THIOMURACIN A DERIVATIVE' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 THR A 26 ? THR A 25 . ? 1_555 ? 2 AC1 7 CYS A 82 ? CYS A 81 . ? 1_555 ? 3 AC1 7 GDP D . ? GDP A 502 . ? 1_555 ? 4 AC1 7 HOH G . ? HOH A 601 . ? 1_555 ? 5 AC1 7 HOH G . ? HOH A 602 . ? 1_555 ? 6 AC1 7 HOH G . ? HOH A 615 . ? 1_555 ? 7 AC1 7 HOH G . ? HOH A 616 . ? 1_555 ? 8 AC2 19 ASP A 22 ? ASP A 21 . ? 1_555 ? 9 AC2 19 HIS A 23 ? HIS A 22 . ? 1_555 ? 10 AC2 19 GLY A 24 ? GLY A 23 . ? 1_555 ? 11 AC2 19 LYS A 25 ? LYS A 24 . ? 1_555 ? 12 AC2 19 THR A 26 ? THR A 25 . ? 1_555 ? 13 AC2 19 THR A 27 ? THR A 26 . ? 1_555 ? 14 AC2 19 PHE A 47 ? PHE A 46 . ? 1_555 ? 15 AC2 19 ASN A 136 ? ASN A 135 . ? 1_555 ? 16 AC2 19 LYS A 137 ? LYS A 136 . ? 1_555 ? 17 AC2 19 ASP A 139 ? ASP A 138 . ? 1_555 ? 18 AC2 19 MET A 140 ? MET A 139 . ? 1_555 ? 19 AC2 19 SER A 174 ? SER A 173 . ? 1_555 ? 20 AC2 19 ALA A 175 ? ALA A 174 . ? 1_555 ? 21 AC2 19 LEU A 176 ? LEU A 175 . ? 1_555 ? 22 AC2 19 MG C . ? MG A 501 . ? 1_555 ? 23 AC2 19 HOH G . ? HOH A 601 . ? 1_555 ? 24 AC2 19 HOH G . ? HOH A 602 . ? 1_555 ? 25 AC2 19 HOH G . ? HOH A 605 . ? 1_555 ? 26 AC2 19 HOH G . ? HOH A 615 . ? 1_555 ? 27 AC3 8 GLU A 153 ? GLU A 152 . ? 1_555 ? 28 AC3 8 GLU A 153 ? GLU A 152 . ? 2_555 ? 29 AC3 8 HOH G . ? HOH A 653 . ? 1_555 ? 30 AC3 8 HOH G . ? HOH A 653 . ? 2_555 ? 31 AC3 8 HOH G . ? HOH A 654 . ? 1_555 ? 32 AC3 8 HOH G . ? HOH A 654 . ? 2_555 ? 33 AC3 8 HOH G . ? HOH A 681 . ? 2_555 ? 34 AC3 8 HOH G . ? HOH A 681 . ? 1_555 ? 35 AC4 5 ARG A 263 ? ARG A 262 . ? 1_555 ? 36 AC4 5 ARG A 319 ? ARG A 318 . ? 4_455 ? 37 AC4 5 HIS A 320 ? HIS A 319 . ? 4_455 ? 38 AC4 5 THR A 321 ? THR A 320 . ? 4_455 ? 39 AC4 5 ARG A 382 ? ARG A 381 . ? 4_455 ? 40 AC5 18 GLU A 216 ? GLU A 215 . ? 1_555 ? 41 AC5 18 THR A 229 ? THR A 228 . ? 1_555 ? 42 AC5 18 GLY A 258 ? GLY A 257 . ? 1_555 ? 43 AC5 18 GLU A 260 ? GLU A 259 . ? 1_555 ? 44 AC5 18 PHE A 262 ? PHE A 261 . ? 1_555 ? 45 AC5 18 ARG A 263 ? ARG A 262 . ? 1_555 ? 46 AC5 18 LEU A 265 ? LEU A 264 . ? 1_555 ? 47 AC5 18 ASN A 274 ? ASN A 273 . ? 1_555 ? 48 AC5 18 VAL A 275 ? VAL A 274 . ? 1_555 ? 49 AC5 18 GLY A 276 ? GLY A 275 . ? 1_555 ? 50 AC5 18 LEU A 278 ? LEU A 277 . ? 1_555 ? 51 AC5 18 THR A 321 ? THR A 320 . ? 4_455 ? 52 AC5 18 PRO A 322 ? PRO A 321 . ? 4_455 ? 53 AC5 18 PHE A 324 ? PHE A 323 . ? 4_455 ? 54 AC5 18 LYS A 325 ? LYS A 324 . ? 4_455 ? 55 AC5 18 HOH G . ? HOH A 672 . ? 4_455 ? 56 AC5 18 HOH H . ? HOH I 1001 . ? 1_555 ? 57 AC5 18 HOH H . ? HOH I 1002 . ? 1_555 ? # _database_PDB_matrix.entry_id 4G5G _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4G5G _atom_sites.fract_transf_matrix[1][1] 0.012453 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008092 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022177 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 ALA 2 1 ? ? ? A . n A 1 3 LYS 3 2 ? ? ? A . n A 1 4 GLU 4 3 3 GLU GLU A . n A 1 5 LYS 5 4 4 LYS LYS A . n A 1 6 PHE 6 5 5 PHE PHE A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 ARG 8 7 7 ARG ARG A . n A 1 9 THR 9 8 8 THR THR A . n A 1 10 LYS 10 9 9 LYS LYS A . n A 1 11 PRO 11 10 10 PRO PRO A . n A 1 12 HIS 12 11 11 HIS HIS A . n A 1 13 VAL 13 12 12 VAL VAL A . n A 1 14 ASN 14 13 13 ASN ASN A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 THR 17 16 16 THR THR A . n A 1 18 ILE 18 17 17 ILE ILE A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 HIS 20 19 19 HIS HIS A . n A 1 21 VAL 21 20 20 VAL VAL A . n A 1 22 ASP 22 21 21 ASP ASP A . n A 1 23 HIS 23 22 22 HIS HIS A . n A 1 24 GLY 24 23 23 GLY GLY A . n A 1 25 LYS 25 24 24 LYS LYS A . n A 1 26 THR 26 25 25 THR THR A . n A 1 27 THR 27 26 26 THR THR A . n A 1 28 LEU 28 27 27 LEU LEU A . n A 1 29 THR 29 28 28 THR THR A . n A 1 30 ALA 30 29 29 ALA ALA A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 ILE 32 31 31 ILE ILE A . n A 1 33 THR 33 32 32 THR THR A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 VAL 35 34 34 VAL VAL A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 ALA 37 36 36 ALA ALA A . n A 1 38 LYS 38 37 37 LYS LYS A . n A 1 39 THR 39 38 38 THR THR A . n A 1 40 TYR 40 39 39 TYR TYR A . n A 1 41 GLY 41 40 40 GLY GLY A . n A 1 42 GLY 42 41 41 GLY GLY A . n A 1 43 ALA 43 42 42 ALA ALA A . n A 1 44 ALA 44 43 43 ALA ALA A . n A 1 45 ARG 45 44 44 ARG ARG A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 PHE 47 46 46 PHE PHE A . n A 1 48 ASP 48 47 47 ASP ASP A . n A 1 49 GLN 49 48 48 GLN GLN A . n A 1 50 ILE 50 49 49 ILE ILE A . n A 1 51 ASP 51 50 50 ASP ASP A . n A 1 52 ASN 52 51 51 ASN ASN A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 PRO 54 53 53 PRO PRO A . n A 1 55 GLU 55 54 54 GLU GLU A . n A 1 56 GLU 56 55 55 GLU GLU A . n A 1 57 LYS 57 56 56 LYS LYS A . n A 1 58 ALA 58 57 57 ALA ALA A . n A 1 59 ARG 59 58 58 ARG ARG A . n A 1 60 GLY 60 59 59 GLY GLY A . n A 1 61 ILE 61 60 60 ILE ILE A . n A 1 62 THR 62 61 61 THR THR A . n A 1 63 ILE 63 62 62 ILE ILE A . n A 1 64 ASN 64 63 63 ASN ASN A . n A 1 65 THR 65 64 64 THR THR A . n A 1 66 SER 66 65 65 SER SER A . n A 1 67 HIS 67 66 66 HIS HIS A . n A 1 68 VAL 68 67 67 VAL VAL A . n A 1 69 GLU 69 68 68 GLU GLU A . n A 1 70 TYR 70 69 69 TYR TYR A . n A 1 71 ASP 71 70 70 ASP ASP A . n A 1 72 THR 72 71 71 THR THR A . n A 1 73 PRO 73 72 72 PRO PRO A . n A 1 74 THR 74 73 73 THR THR A . n A 1 75 ARG 75 74 74 ARG ARG A . n A 1 76 HIS 76 75 75 HIS HIS A . n A 1 77 TYR 77 76 76 TYR TYR A . n A 1 78 ALA 78 77 77 ALA ALA A . n A 1 79 HIS 79 78 78 HIS HIS A . n A 1 80 VAL 80 79 79 VAL VAL A . n A 1 81 ASP 81 80 80 ASP ASP A . n A 1 82 CYS 82 81 81 CYS CYS A . n A 1 83 PRO 83 82 82 PRO PRO A . n A 1 84 GLY 84 83 83 GLY GLY A . n A 1 85 HIS 85 84 84 HIS HIS A . n A 1 86 ALA 86 85 85 ALA ALA A . n A 1 87 ASP 87 86 86 ASP ASP A . n A 1 88 TYR 88 87 87 TYR TYR A . n A 1 89 VAL 89 88 88 VAL VAL A . n A 1 90 LYS 90 89 89 LYS LYS A . n A 1 91 ASN 91 90 90 ASN ASN A . n A 1 92 MET 92 91 91 MET MET A . n A 1 93 ILE 93 92 92 ILE ILE A . n A 1 94 THR 94 93 93 THR THR A . n A 1 95 GLY 95 94 94 GLY GLY A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 ALA 97 96 96 ALA ALA A . n A 1 98 GLN 98 97 97 GLN GLN A . n A 1 99 MET 99 98 98 MET MET A . n A 1 100 ASP 100 99 99 ASP ASP A . n A 1 101 GLY 101 100 100 GLY GLY A . n A 1 102 ALA 102 101 101 ALA ALA A . n A 1 103 ILE 103 102 102 ILE ILE A . n A 1 104 LEU 104 103 103 LEU LEU A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 VAL 106 105 105 VAL VAL A . n A 1 107 ALA 107 106 106 ALA ALA A . n A 1 108 ALA 108 107 107 ALA ALA A . n A 1 109 THR 109 108 108 THR THR A . n A 1 110 ASP 110 109 109 ASP ASP A . n A 1 111 GLY 111 110 110 GLY GLY A . n A 1 112 PRO 112 111 111 PRO PRO A . n A 1 113 MET 113 112 112 MET MET A . n A 1 114 PRO 114 113 113 PRO PRO A . n A 1 115 GLN 115 114 114 GLN GLN A . n A 1 116 THR 116 115 115 THR THR A . n A 1 117 ARG 117 116 116 ARG ARG A . n A 1 118 GLU 118 117 117 GLU GLU A . n A 1 119 HIS 119 118 118 HIS HIS A . n A 1 120 ILE 120 119 119 ILE ILE A . n A 1 121 LEU 121 120 120 LEU LEU A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 GLY 123 122 122 GLY GLY A . n A 1 124 ARG 124 123 123 ARG ARG A . n A 1 125 GLN 125 124 124 GLN GLN A . n A 1 126 VAL 126 125 125 VAL VAL A . n A 1 127 GLY 127 126 126 GLY GLY A . n A 1 128 VAL 128 127 127 VAL VAL A . n A 1 129 PRO 129 128 128 PRO PRO A . n A 1 130 TYR 130 129 129 TYR TYR A . n A 1 131 ILE 131 130 130 ILE ILE A . n A 1 132 ILE 132 131 131 ILE ILE A . n A 1 133 VAL 133 132 132 VAL VAL A . n A 1 134 PHE 134 133 133 PHE PHE A . n A 1 135 LEU 135 134 134 LEU LEU A . n A 1 136 ASN 136 135 135 ASN ASN A . n A 1 137 LYS 137 136 136 LYS LYS A . n A 1 138 CYS 138 137 137 CYS CYS A . n A 1 139 ASP 139 138 138 ASP ASP A . n A 1 140 MET 140 139 139 MET MET A . n A 1 141 VAL 141 140 140 VAL VAL A . n A 1 142 ASP 142 141 141 ASP ASP A . n A 1 143 ASP 143 142 142 ASP ASP A . n A 1 144 GLU 144 143 143 GLU GLU A . n A 1 145 GLU 145 144 144 GLU GLU A . n A 1 146 LEU 146 145 145 LEU LEU A . n A 1 147 LEU 147 146 146 LEU LEU A . n A 1 148 GLU 148 147 147 GLU GLU A . n A 1 149 LEU 149 148 148 LEU LEU A . n A 1 150 VAL 150 149 149 VAL VAL A . n A 1 151 GLU 151 150 150 GLU GLU A . n A 1 152 MET 152 151 151 MET MET A . n A 1 153 GLU 153 152 152 GLU GLU A . n A 1 154 VAL 154 153 153 VAL VAL A . n A 1 155 ARG 155 154 154 ARG ARG A . n A 1 156 GLU 156 155 155 GLU GLU A . n A 1 157 LEU 157 156 156 LEU LEU A . n A 1 158 LEU 158 157 157 LEU LEU A . n A 1 159 SER 159 158 158 SER SER A . n A 1 160 GLN 160 159 159 GLN GLN A . n A 1 161 TYR 161 160 160 TYR TYR A . n A 1 162 ASP 162 161 161 ASP ASP A . n A 1 163 PHE 163 162 162 PHE PHE A . n A 1 164 PRO 164 163 163 PRO PRO A . n A 1 165 GLY 165 164 164 GLY GLY A . n A 1 166 ASP 166 165 165 ASP ASP A . n A 1 167 ASP 167 166 166 ASP ASP A . n A 1 168 THR 168 167 167 THR THR A . n A 1 169 PRO 169 168 168 PRO PRO A . n A 1 170 ILE 170 169 169 ILE ILE A . n A 1 171 VAL 171 170 170 VAL VAL A . n A 1 172 ARG 172 171 171 ARG ARG A . n A 1 173 GLY 173 172 172 GLY GLY A . n A 1 174 SER 174 173 173 SER SER A . n A 1 175 ALA 175 174 174 ALA ALA A . n A 1 176 LEU 176 175 175 LEU LEU A . n A 1 177 LYS 177 176 176 LYS LYS A . n A 1 178 ALA 178 177 177 ALA ALA A . n A 1 179 LEU 179 178 178 LEU LEU A . n A 1 180 GLU 180 179 179 GLU GLU A . n A 1 181 GLY 181 180 180 GLY GLY A . n A 1 182 ASP 182 181 181 ASP ASP A . n A 1 183 ALA 183 182 182 ALA ALA A . n A 1 184 GLU 184 183 183 GLU GLU A . n A 1 185 TRP 185 184 184 TRP TRP A . n A 1 186 GLU 186 185 185 GLU GLU A . n A 1 187 ALA 187 186 186 ALA ALA A . n A 1 188 LYS 188 187 187 LYS LYS A . n A 1 189 ILE 189 188 188 ILE ILE A . n A 1 190 LEU 190 189 189 LEU LEU A . n A 1 191 GLU 191 190 190 GLU GLU A . n A 1 192 LEU 192 191 191 LEU LEU A . n A 1 193 ALA 193 192 192 ALA ALA A . n A 1 194 GLY 194 193 193 GLY GLY A . n A 1 195 PHE 195 194 194 PHE PHE A . n A 1 196 LEU 196 195 195 LEU LEU A . n A 1 197 ASP 197 196 196 ASP ASP A . n A 1 198 SER 198 197 197 SER SER A . n A 1 199 TYR 199 198 198 TYR TYR A . n A 1 200 ILE 200 199 199 ILE ILE A . n A 1 201 PRO 201 200 200 PRO PRO A . n A 1 202 GLU 202 201 201 GLU GLU A . n A 1 203 PRO 203 202 202 PRO PRO A . n A 1 204 GLU 204 203 203 GLU GLU A . n A 1 205 ARG 205 204 204 ARG ARG A . n A 1 206 ALA 206 205 205 ALA ALA A . n A 1 207 ILE 207 206 206 ILE ILE A . n A 1 208 ASP 208 207 207 ASP ASP A . n A 1 209 LYS 209 208 208 LYS LYS A . n A 1 210 PRO 210 209 209 PRO PRO A . n A 1 211 PHE 211 210 210 PHE PHE A . n A 1 212 LEU 212 211 211 LEU LEU A . n A 1 213 LEU 213 212 212 LEU LEU A . n A 1 214 PRO 214 213 213 PRO PRO A . n A 1 215 ILE 215 214 214 ILE ILE A . n A 1 216 GLU 216 215 215 GLU GLU A . n A 1 217 ASP 217 216 216 ASP ASP A . n A 1 218 VAL 218 217 217 VAL VAL A . n A 1 219 PHE 219 218 218 PHE PHE A . n A 1 220 SER 220 219 219 SER SER A . n A 1 221 ILE 221 220 220 ILE ILE A . n A 1 222 SER 222 221 221 SER SER A . n A 1 223 GLY 223 222 222 GLY GLY A . n A 1 224 ARG 224 223 223 ARG ARG A . n A 1 225 GLY 225 224 224 GLY GLY A . n A 1 226 THR 226 225 225 THR THR A . n A 1 227 VAL 227 226 226 VAL VAL A . n A 1 228 VAL 228 227 227 VAL VAL A . n A 1 229 THR 229 228 228 THR THR A . n A 1 230 GLY 230 229 229 GLY GLY A . n A 1 231 ARG 231 230 230 ARG ARG A . n A 1 232 VAL 232 231 231 VAL VAL A . n A 1 233 GLU 233 232 232 GLU GLU A . n A 1 234 ARG 234 233 233 ARG ARG A . n A 1 235 GLY 235 234 234 GLY GLY A . n A 1 236 ILE 236 235 235 ILE ILE A . n A 1 237 ILE 237 236 236 ILE ILE A . n A 1 238 LYS 238 237 237 LYS LYS A . n A 1 239 VAL 239 238 238 VAL VAL A . n A 1 240 GLY 240 239 239 GLY GLY A . n A 1 241 GLU 241 240 240 GLU GLU A . n A 1 242 GLU 242 241 241 GLU GLU A . n A 1 243 VAL 243 242 242 VAL VAL A . n A 1 244 GLU 244 243 243 GLU GLU A . n A 1 245 ILE 245 244 244 ILE ILE A . n A 1 246 VAL 246 245 245 VAL VAL A . n A 1 247 GLY 247 246 246 GLY GLY A . n A 1 248 ILE 248 247 247 ILE ILE A . n A 1 249 LYS 249 248 248 LYS LYS A . n A 1 250 GLU 250 249 249 GLU GLU A . n A 1 251 THR 251 250 250 THR THR A . n A 1 252 GLN 252 251 251 GLN GLN A . n A 1 253 LYS 253 252 252 LYS LYS A . n A 1 254 SER 254 253 253 SER SER A . n A 1 255 THR 255 254 254 THR THR A . n A 1 256 CYS 256 255 255 CYS CYS A . n A 1 257 THR 257 256 256 THR THR A . n A 1 258 GLY 258 257 257 GLY GLY A . n A 1 259 VAL 259 258 258 VAL VAL A . n A 1 260 GLU 260 259 259 GLU GLU A . n A 1 261 MET 261 260 260 MET MET A . n A 1 262 PHE 262 261 261 PHE PHE A . n A 1 263 ARG 263 262 262 ARG ARG A . n A 1 264 LYS 264 263 263 LYS LYS A . n A 1 265 LEU 265 264 264 LEU LEU A . n A 1 266 LEU 266 265 265 LEU LEU A . n A 1 267 ASP 267 266 266 ASP ASP A . n A 1 268 GLU 268 267 267 GLU GLU A . n A 1 269 GLY 269 268 268 GLY GLY A . n A 1 270 ARG 270 269 269 ARG ARG A . n A 1 271 ALA 271 270 270 ALA ALA A . n A 1 272 GLY 272 271 271 GLY GLY A . n A 1 273 GLU 273 272 272 GLU GLU A . n A 1 274 ASN 274 273 273 ASN ASN A . n A 1 275 VAL 275 274 274 VAL VAL A . n A 1 276 GLY 276 275 275 GLY GLY A . n A 1 277 VAL 277 276 276 VAL VAL A . n A 1 278 LEU 278 277 277 LEU LEU A . n A 1 279 LEU 279 278 278 LEU LEU A . n A 1 280 ARG 280 279 279 ARG ARG A . n A 1 281 GLY 281 280 280 GLY GLY A . n A 1 282 ILE 282 281 281 ILE ILE A . n A 1 283 LYS 283 282 282 LYS LYS A . n A 1 284 ARG 284 283 283 ARG ARG A . n A 1 285 GLU 285 284 284 GLU GLU A . n A 1 286 GLU 286 285 285 GLU GLU A . n A 1 287 ILE 287 286 286 ILE ILE A . n A 1 288 GLU 288 287 287 GLU GLU A . n A 1 289 ARG 289 288 288 ARG ARG A . n A 1 290 GLY 290 289 289 GLY GLY A . n A 1 291 GLN 291 290 290 GLN GLN A . n A 1 292 VAL 292 291 291 VAL VAL A . n A 1 293 LEU 293 292 292 LEU LEU A . n A 1 294 ALA 294 293 293 ALA ALA A . n A 1 295 LYS 295 294 294 LYS LYS A . n A 1 296 PRO 296 295 295 PRO PRO A . n A 1 297 GLY 297 296 296 GLY GLY A . n A 1 298 THR 298 297 297 THR THR A . n A 1 299 ILE 299 298 298 ILE ILE A . n A 1 300 LYS 300 299 299 LYS LYS A . n A 1 301 PRO 301 300 300 PRO PRO A . n A 1 302 HIS 302 301 301 HIS HIS A . n A 1 303 THR 303 302 302 THR THR A . n A 1 304 LYS 304 303 303 LYS LYS A . n A 1 305 PHE 305 304 304 PHE PHE A . n A 1 306 GLU 306 305 305 GLU GLU A . n A 1 307 SER 307 306 306 SER SER A . n A 1 308 GLU 308 307 307 GLU GLU A . n A 1 309 VAL 309 308 308 VAL VAL A . n A 1 310 TYR 310 309 309 TYR TYR A . n A 1 311 ILE 311 310 310 ILE ILE A . n A 1 312 LEU 312 311 311 LEU LEU A . n A 1 313 SER 313 312 312 SER SER A . n A 1 314 LYS 314 313 313 LYS LYS A . n A 1 315 ASP 315 314 314 ASP ASP A . n A 1 316 GLU 316 315 315 GLU GLU A . n A 1 317 GLY 317 316 316 GLY GLY A . n A 1 318 GLY 318 317 317 GLY GLY A . n A 1 319 ARG 319 318 318 ARG ARG A . n A 1 320 HIS 320 319 319 HIS HIS A . n A 1 321 THR 321 320 320 THR THR A . n A 1 322 PRO 322 321 321 PRO PRO A . n A 1 323 PHE 323 322 322 PHE PHE A . n A 1 324 PHE 324 323 323 PHE PHE A . n A 1 325 LYS 325 324 324 LYS LYS A . n A 1 326 GLY 326 325 325 GLY GLY A . n A 1 327 TYR 327 326 326 TYR TYR A . n A 1 328 ARG 328 327 327 ARG ARG A . n A 1 329 PRO 329 328 328 PRO PRO A . n A 1 330 GLN 330 329 329 GLN GLN A . n A 1 331 PHE 331 330 330 PHE PHE A . n A 1 332 TYR 332 331 331 TYR TYR A . n A 1 333 PHE 333 332 332 PHE PHE A . n A 1 334 ARG 334 333 333 ARG ARG A . n A 1 335 THR 335 334 334 THR THR A . n A 1 336 THR 336 335 335 THR THR A . n A 1 337 ASP 337 336 336 ASP ASP A . n A 1 338 VAL 338 337 337 VAL VAL A . n A 1 339 THR 339 338 338 THR THR A . n A 1 340 GLY 340 339 339 GLY GLY A . n A 1 341 THR 341 340 340 THR THR A . n A 1 342 ILE 342 341 341 ILE ILE A . n A 1 343 GLU 343 342 342 GLU GLU A . n A 1 344 LEU 344 343 343 LEU LEU A . n A 1 345 PRO 345 344 344 PRO PRO A . n A 1 346 GLU 346 345 345 GLU GLU A . n A 1 347 GLY 347 346 346 GLY GLY A . n A 1 348 VAL 348 347 347 VAL VAL A . n A 1 349 GLU 349 348 348 GLU GLU A . n A 1 350 MET 350 349 349 MET MET A . n A 1 351 VAL 351 350 350 VAL VAL A . n A 1 352 MET 352 351 351 MET MET A . n A 1 353 PRO 353 352 352 PRO PRO A . n A 1 354 GLY 354 353 353 GLY GLY A . n A 1 355 ASP 355 354 354 ASP ASP A . n A 1 356 ASN 356 355 355 ASN ASN A . n A 1 357 ILE 357 356 356 ILE ILE A . n A 1 358 LYS 358 357 357 LYS LYS A . n A 1 359 MET 359 358 358 MET MET A . n A 1 360 VAL 360 359 359 VAL VAL A . n A 1 361 VAL 361 360 360 VAL VAL A . n A 1 362 THR 362 361 361 THR THR A . n A 1 363 LEU 363 362 362 LEU LEU A . n A 1 364 ILE 364 363 363 ILE ILE A . n A 1 365 HIS 365 364 364 HIS HIS A . n A 1 366 PRO 366 365 365 PRO PRO A . n A 1 367 ILE 367 366 366 ILE ILE A . n A 1 368 ALA 368 367 367 ALA ALA A . n A 1 369 MET 369 368 368 MET MET A . n A 1 370 ASP 370 369 369 ASP ASP A . n A 1 371 ASP 371 370 370 ASP ASP A . n A 1 372 GLY 372 371 371 GLY GLY A . n A 1 373 LEU 373 372 372 LEU LEU A . n A 1 374 ARG 374 373 373 ARG ARG A . n A 1 375 PHE 375 374 374 PHE PHE A . n A 1 376 ALA 376 375 375 ALA ALA A . n A 1 377 ILE 377 376 376 ILE ILE A . n A 1 378 ARG 378 377 377 ARG ARG A . n A 1 379 GLU 379 378 378 GLU GLU A . n A 1 380 GLY 380 379 379 GLY GLY A . n A 1 381 GLY 381 380 380 GLY GLY A . n A 1 382 ARG 382 381 381 ARG ARG A . n A 1 383 THR 383 382 382 THR THR A . n A 1 384 VAL 384 383 383 VAL VAL A . n A 1 385 GLY 385 384 384 GLY GLY A . n A 1 386 ALA 386 385 385 ALA ALA A . n A 1 387 GLY 387 386 386 GLY GLY A . n A 1 388 VAL 388 387 387 VAL VAL A . n A 1 389 VAL 389 388 388 VAL VAL A . n A 1 390 ALA 390 389 389 ALA ALA A . n A 1 391 LYS 391 390 390 LYS LYS A . n A 1 392 VAL 392 391 391 VAL VAL A . n A 1 393 LEU 393 392 392 LEU LEU A . n A 1 394 GLY 394 393 393 GLY GLY A . n B 2 1 SER 1 900 900 SER SER I . n B 2 2 BB9 2 901 901 BB9 BB9 I . n B 2 3 ASN 3 902 902 ASN ASN I . n B 2 4 BB6 4 903 903 BB6 BB6 I . n B 2 5 H14 5 904 904 H14 H14 I . n B 2 6 BB9 6 905 905 BB9 BB9 I . n B 2 7 TYR 7 906 906 TYR TYR I . n B 2 8 05N 8 907 907 05N 05N I . n B 2 9 BB9 9 908 908 BB9 BB9 I . n B 2 10 BB9 10 909 909 BB9 BB9 I . n B 2 11 MH6 11 910 910 MH6 MH6 I . n B 2 12 BB9 12 911 911 BB9 BB9 I . n B 2 13 NH2 13 912 912 NH2 NH2 I . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 501 501 MG MG A . D 4 GDP 1 502 999 GDP GDP A . E 3 MG 1 503 1 MG MG A . F 5 SO4 1 504 1 SO4 SO4 A . G 6 HOH 1 601 1 HOH HOH A . G 6 HOH 2 602 2 HOH HOH A . G 6 HOH 3 603 3 HOH HOH A . G 6 HOH 4 604 4 HOH HOH A . G 6 HOH 5 605 5 HOH HOH A . G 6 HOH 6 606 6 HOH HOH A . G 6 HOH 7 607 7 HOH HOH A . G 6 HOH 8 608 8 HOH HOH A . G 6 HOH 9 609 9 HOH HOH A . G 6 HOH 10 610 10 HOH HOH A . G 6 HOH 11 611 11 HOH HOH A . G 6 HOH 12 612 12 HOH HOH A . G 6 HOH 13 613 13 HOH HOH A . G 6 HOH 14 614 14 HOH HOH A . G 6 HOH 15 615 15 HOH HOH A . G 6 HOH 16 616 16 HOH HOH A . G 6 HOH 17 617 18 HOH HOH A . G 6 HOH 18 618 19 HOH HOH A . G 6 HOH 19 619 20 HOH HOH A . G 6 HOH 20 620 21 HOH HOH A . G 6 HOH 21 621 22 HOH HOH A . G 6 HOH 22 622 23 HOH HOH A . G 6 HOH 23 623 24 HOH HOH A . G 6 HOH 24 624 25 HOH HOH A . G 6 HOH 25 625 26 HOH HOH A . G 6 HOH 26 626 27 HOH HOH A . G 6 HOH 27 627 28 HOH HOH A . G 6 HOH 28 628 29 HOH HOH A . G 6 HOH 29 629 30 HOH HOH A . G 6 HOH 30 630 31 HOH HOH A . G 6 HOH 31 631 32 HOH HOH A . G 6 HOH 32 632 33 HOH HOH A . G 6 HOH 33 633 34 HOH HOH A . G 6 HOH 34 634 35 HOH HOH A . G 6 HOH 35 635 36 HOH HOH A . G 6 HOH 36 636 37 HOH HOH A . G 6 HOH 37 637 38 HOH HOH A . G 6 HOH 38 638 39 HOH HOH A . G 6 HOH 39 639 40 HOH HOH A . G 6 HOH 40 640 41 HOH HOH A . G 6 HOH 41 641 42 HOH HOH A . G 6 HOH 42 642 43 HOH HOH A . G 6 HOH 43 643 44 HOH HOH A . G 6 HOH 44 644 45 HOH HOH A . G 6 HOH 45 645 46 HOH HOH A . G 6 HOH 46 646 47 HOH HOH A . G 6 HOH 47 647 48 HOH HOH A . G 6 HOH 48 648 49 HOH HOH A . G 6 HOH 49 649 50 HOH HOH A . G 6 HOH 50 650 51 HOH HOH A . G 6 HOH 51 651 52 HOH HOH A . G 6 HOH 52 652 53 HOH HOH A . G 6 HOH 53 653 54 HOH HOH A . G 6 HOH 54 654 55 HOH HOH A . G 6 HOH 55 655 56 HOH HOH A . G 6 HOH 56 656 57 HOH HOH A . G 6 HOH 57 657 58 HOH HOH A . G 6 HOH 58 658 59 HOH HOH A . G 6 HOH 59 659 60 HOH HOH A . G 6 HOH 60 660 61 HOH HOH A . G 6 HOH 61 661 62 HOH HOH A . G 6 HOH 62 662 63 HOH HOH A . G 6 HOH 63 663 64 HOH HOH A . G 6 HOH 64 664 65 HOH HOH A . G 6 HOH 65 665 66 HOH HOH A . G 6 HOH 66 666 67 HOH HOH A . G 6 HOH 67 667 68 HOH HOH A . G 6 HOH 68 668 69 HOH HOH A . G 6 HOH 69 669 70 HOH HOH A . G 6 HOH 70 670 71 HOH HOH A . G 6 HOH 71 671 72 HOH HOH A . G 6 HOH 72 672 73 HOH HOH A . G 6 HOH 73 673 74 HOH HOH A . G 6 HOH 74 674 75 HOH HOH A . G 6 HOH 75 675 76 HOH HOH A . G 6 HOH 76 676 77 HOH HOH A . G 6 HOH 77 677 78 HOH HOH A . G 6 HOH 78 678 79 HOH HOH A . G 6 HOH 79 679 80 HOH HOH A . G 6 HOH 80 680 81 HOH HOH A . G 6 HOH 81 681 82 HOH HOH A . G 6 HOH 82 682 83 HOH HOH A . G 6 HOH 83 683 84 HOH HOH A . G 6 HOH 84 684 85 HOH HOH A . G 6 HOH 85 685 86 HOH HOH A . G 6 HOH 86 686 87 HOH HOH A . G 6 HOH 87 687 88 HOH HOH A . G 6 HOH 88 688 89 HOH HOH A . G 6 HOH 89 689 90 HOH HOH A . G 6 HOH 90 690 91 HOH HOH A . G 6 HOH 91 691 92 HOH HOH A . G 6 HOH 92 692 93 HOH HOH A . G 6 HOH 93 693 94 HOH HOH A . G 6 HOH 94 694 95 HOH HOH A . G 6 HOH 95 695 96 HOH HOH A . G 6 HOH 96 696 97 HOH HOH A . G 6 HOH 97 697 98 HOH HOH A . G 6 HOH 98 698 99 HOH HOH A . G 6 HOH 99 699 100 HOH HOH A . G 6 HOH 100 700 101 HOH HOH A . G 6 HOH 101 701 102 HOH HOH A . G 6 HOH 102 702 104 HOH HOH A . G 6 HOH 103 703 105 HOH HOH A . G 6 HOH 104 704 106 HOH HOH A . G 6 HOH 105 705 107 HOH HOH A . G 6 HOH 106 706 108 HOH HOH A . G 6 HOH 107 707 109 HOH HOH A . G 6 HOH 108 708 110 HOH HOH A . G 6 HOH 109 709 111 HOH HOH A . G 6 HOH 110 710 112 HOH HOH A . G 6 HOH 111 711 113 HOH HOH A . G 6 HOH 112 712 114 HOH HOH A . G 6 HOH 113 713 115 HOH HOH A . G 6 HOH 114 714 116 HOH HOH A . G 6 HOH 115 715 117 HOH HOH A . H 6 HOH 1 1001 17 HOH HOH I . H 6 HOH 2 1002 103 HOH HOH I . # _pdbx_molecule_features.prd_id PRD_000901 _pdbx_molecule_features.name 'thiomuracin A derivative' _pdbx_molecule_features.type Oligopeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000901 _pdbx_molecule.asym_id B # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B BB9 2 I BB9 901 ? CYS ? 2 B BB6 4 I BB6 903 ? CYS '(2Z)-2-AMINO-3-SULFANYLBUT-2-ENOIC ACID' 3 B H14 5 I H14 904 ? PHE '(2S,3R)-BETA-HYDROXY-PHENYLALANINE' 4 B BB9 6 I BB9 905 ? CYS ? 5 B 05N 8 I 05N 907 ? PRO '(3R,4R)-4-HYDROXY-3-METHYL-L-PROLINE' 6 B BB9 9 I BB9 908 ? CYS ? 7 B BB9 10 I BB9 909 ? CYS ? 8 B MH6 11 I MH6 910 ? SER '3-HYDROXY-2-IMINOPROPANOIC ACID' 9 B BB9 12 I BB9 911 ? CYS ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MG 503 ? E MG . 2 1 A HOH 689 ? G HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG1 ? A THR 26 ? A THR 25 ? 1_555 MG ? C MG . ? A MG 501 ? 1_555 O2B ? D GDP . ? A GDP 502 ? 1_555 80.5 ? 2 OG1 ? A THR 26 ? A THR 25 ? 1_555 MG ? C MG . ? A MG 501 ? 1_555 O ? G HOH . ? A HOH 601 ? 1_555 79.0 ? 3 O2B ? D GDP . ? A GDP 502 ? 1_555 MG ? C MG . ? A MG 501 ? 1_555 O ? G HOH . ? A HOH 601 ? 1_555 81.2 ? 4 OG1 ? A THR 26 ? A THR 25 ? 1_555 MG ? C MG . ? A MG 501 ? 1_555 O ? G HOH . ? A HOH 602 ? 1_555 83.7 ? 5 O2B ? D GDP . ? A GDP 502 ? 1_555 MG ? C MG . ? A MG 501 ? 1_555 O ? G HOH . ? A HOH 602 ? 1_555 84.3 ? 6 O ? G HOH . ? A HOH 601 ? 1_555 MG ? C MG . ? A MG 501 ? 1_555 O ? G HOH . ? A HOH 602 ? 1_555 159.0 ? 7 OG1 ? A THR 26 ? A THR 25 ? 1_555 MG ? C MG . ? A MG 501 ? 1_555 O ? G HOH . ? A HOH 615 ? 1_555 171.9 ? 8 O2B ? D GDP . ? A GDP 502 ? 1_555 MG ? C MG . ? A MG 501 ? 1_555 O ? G HOH . ? A HOH 615 ? 1_555 92.0 ? 9 O ? G HOH . ? A HOH 601 ? 1_555 MG ? C MG . ? A MG 501 ? 1_555 O ? G HOH . ? A HOH 615 ? 1_555 96.8 ? 10 O ? G HOH . ? A HOH 602 ? 1_555 MG ? C MG . ? A MG 501 ? 1_555 O ? G HOH . ? A HOH 615 ? 1_555 98.8 ? 11 OG1 ? A THR 26 ? A THR 25 ? 1_555 MG ? C MG . ? A MG 501 ? 1_555 O ? G HOH . ? A HOH 616 ? 1_555 82.9 ? 12 O2B ? D GDP . ? A GDP 502 ? 1_555 MG ? C MG . ? A MG 501 ? 1_555 O ? G HOH . ? A HOH 616 ? 1_555 163.2 ? 13 O ? G HOH . ? A HOH 601 ? 1_555 MG ? C MG . ? A MG 501 ? 1_555 O ? G HOH . ? A HOH 616 ? 1_555 98.4 ? 14 O ? G HOH . ? A HOH 602 ? 1_555 MG ? C MG . ? A MG 501 ? 1_555 O ? G HOH . ? A HOH 616 ? 1_555 91.1 ? 15 O ? G HOH . ? A HOH 615 ? 1_555 MG ? C MG . ? A MG 501 ? 1_555 O ? G HOH . ? A HOH 616 ? 1_555 104.7 ? 16 O ? G HOH . ? A HOH 653 ? 1_555 MG ? E MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 654 ? 1_555 101.6 ? 17 O ? G HOH . ? A HOH 653 ? 1_555 MG ? E MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 681 ? 1_555 84.2 ? 18 O ? G HOH . ? A HOH 654 ? 1_555 MG ? E MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 681 ? 1_555 113.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-12-26 2 'Structure model' 2 0 2023-09-13 3 'Structure model' 3 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Polymer sequence' 5 2 'Structure model' 'Refinement description' 6 2 'Structure model' 'Structure summary' 7 3 'Structure model' 'Atomic model' 8 3 'Structure model' 'Data collection' 9 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' chem_comp_atom 3 2 'Structure model' chem_comp_bond 4 2 'Structure model' database_2 5 2 'Structure model' entity_poly 6 2 'Structure model' pdbx_initial_refinement_model 7 2 'Structure model' pdbx_struct_conn_angle 8 2 'Structure model' struct_conn 9 2 'Structure model' struct_ref_seq_dif 10 2 'Structure model' struct_site 11 3 'Structure model' atom_site 12 3 'Structure model' chem_comp_atom 13 3 'Structure model' chem_comp_bond 14 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.pdbx_synonyms' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' 4 2 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.value' 8 2 'Structure model' '_struct_conn.conn_type_id' 9 2 'Structure model' '_struct_conn.id' 10 2 'Structure model' '_struct_conn.pdbx_dist_value' 11 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 13 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 16 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 18 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 19 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 20 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 23 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 24 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 25 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 26 2 'Structure model' '_struct_ref_seq_dif.details' 27 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 28 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 29 2 'Structure model' '_struct_site.pdbx_auth_seq_id' 30 3 'Structure model' '_atom_site.auth_atom_id' 31 3 'Structure model' '_atom_site.label_atom_id' 32 3 'Structure model' '_chem_comp_atom.atom_id' 33 3 'Structure model' '_chem_comp_bond.atom_id_1' 34 3 'Structure model' '_chem_comp_bond.atom_id_2' 35 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 36 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 CNX refinement . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A VAL 127 ? ? N A PRO 128 ? ? CA A PRO 128 ? ? 128.72 119.30 9.42 1.50 Y 2 1 CB I TYR 906 ? ? CG I TYR 906 ? ? CD2 I TYR 906 ? ? 117.01 121.00 -3.99 0.60 N 3 1 CG I TYR 906 ? ? CD2 I TYR 906 ? ? CE2 I TYR 906 ? ? 116.06 121.30 -5.24 0.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 4 ? ? -98.69 43.25 2 1 ALA A 57 ? ? -89.35 -77.96 3 1 ASP A 142 ? ? -68.51 75.61 4 1 GLU A 143 ? ? -42.46 -13.04 5 1 ASP A 181 ? ? -53.21 102.99 6 1 GLU A 215 ? ? -107.63 -77.29 7 1 SER A 221 ? ? -38.78 118.01 8 1 ILE A 247 ? ? 66.02 -68.95 9 1 ARG A 262 ? ? 74.94 -1.27 10 1 ARG A 333 ? ? 60.80 -83.59 11 1 H14 I 904 ? ? -138.78 -32.77 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id I _pdbx_validate_chiral.auth_comp_id SER _pdbx_validate_chiral.auth_seq_id 900 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A ALA 1 ? A ALA 2 3 1 Y 1 A LYS 2 ? A LYS 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 05N N N N N 1 05N CA C N S 2 05N C20 C N R 3 05N C21 C N R 4 05N C C N N 5 05N O9 O N N 6 05N C52 C N N 7 05N C53 C N N 8 05N HA H N N 9 05N H16 H N N 10 05N H17 H N N 11 05N H40 H N N 12 05N H41 H N N 13 05N H42 H N N 14 05N H43 H N N 15 05N H44 H N N 16 05N H45 H N N 17 05N H H N N 18 05N OXT O N N 19 05N O O N N 20 05N HXT H N N 21 ALA N N N N 22 ALA CA C N S 23 ALA C C N N 24 ALA O O N N 25 ALA CB C N N 26 ALA OXT O N N 27 ALA H H N N 28 ALA H2 H N N 29 ALA HA H N N 30 ALA HB1 H N N 31 ALA HB2 H N N 32 ALA HB3 H N N 33 ALA HXT H N N 34 ARG N N N N 35 ARG CA C N S 36 ARG C C N N 37 ARG O O N N 38 ARG CB C N N 39 ARG CG C N N 40 ARG CD C N N 41 ARG NE N N N 42 ARG CZ C N N 43 ARG NH1 N N N 44 ARG NH2 N N N 45 ARG OXT O N N 46 ARG H H N N 47 ARG H2 H N N 48 ARG HA H N N 49 ARG HB2 H N N 50 ARG HB3 H N N 51 ARG HG2 H N N 52 ARG HG3 H N N 53 ARG HD2 H N N 54 ARG HD3 H N N 55 ARG HE H N N 56 ARG HH11 H N N 57 ARG HH12 H N N 58 ARG HH21 H N N 59 ARG HH22 H N N 60 ARG HXT H N N 61 ASN N N N N 62 ASN CA C N S 63 ASN C C N N 64 ASN O O N N 65 ASN CB C N N 66 ASN CG C N N 67 ASN OD1 O N N 68 ASN ND2 N N N 69 ASN OXT O N N 70 ASN H H N N 71 ASN H2 H N N 72 ASN HA H N N 73 ASN HB2 H N N 74 ASN HB3 H N N 75 ASN HD21 H N N 76 ASN HD22 H N N 77 ASN HXT H N N 78 ASP N N N N 79 ASP CA C N S 80 ASP C C N N 81 ASP O O N N 82 ASP CB C N N 83 ASP CG C N N 84 ASP OD1 O N N 85 ASP OD2 O N N 86 ASP OXT O N N 87 ASP H H N N 88 ASP H2 H N N 89 ASP HA H N N 90 ASP HB2 H N N 91 ASP HB3 H N N 92 ASP HD2 H N N 93 ASP HXT H N N 94 BB6 N N N N 95 BB6 CA C N N 96 BB6 C C N N 97 BB6 O O N N 98 BB6 CB C N N 99 BB6 SG S N N 100 BB6 CD C N N 101 BB6 OXT O N N 102 BB6 H H N N 103 BB6 H2 H N N 104 BB6 HXT H N N 105 BB6 HG H N N 106 BB6 HD1C H N N 107 BB6 HD2C H N N 108 BB6 HD3C H N N 109 BB9 N N N N 110 BB9 CA C N N 111 BB9 C C N N 112 BB9 O O N N 113 BB9 CB C N N 114 BB9 SG S N N 115 BB9 OXT O N N 116 BB9 H H N N 117 BB9 H2 H N N 118 BB9 HB H N N 119 BB9 HXT H N N 120 BB9 HG H N N 121 CYS N N N N 122 CYS CA C N R 123 CYS C C N N 124 CYS O O N N 125 CYS CB C N N 126 CYS SG S N N 127 CYS OXT O N N 128 CYS H H N N 129 CYS H2 H N N 130 CYS HA H N N 131 CYS HB2 H N N 132 CYS HB3 H N N 133 CYS HG H N N 134 CYS HXT H N N 135 GDP PB P N N 136 GDP O1B O N N 137 GDP O2B O N N 138 GDP O3B O N N 139 GDP O3A O N N 140 GDP PA P N N 141 GDP O1A O N N 142 GDP O2A O N N 143 GDP "O5'" O N N 144 GDP "C5'" C N N 145 GDP "C4'" C N R 146 GDP "O4'" O N N 147 GDP "C3'" C N S 148 GDP "O3'" O N N 149 GDP "C2'" C N R 150 GDP "O2'" O N N 151 GDP "C1'" C N R 152 GDP N9 N Y N 153 GDP C8 C Y N 154 GDP N7 N Y N 155 GDP C5 C Y N 156 GDP C6 C N N 157 GDP O6 O N N 158 GDP N1 N N N 159 GDP C2 C N N 160 GDP N2 N N N 161 GDP N3 N N N 162 GDP C4 C Y N 163 GDP HOB2 H N N 164 GDP HOB3 H N N 165 GDP HOA2 H N N 166 GDP "H5'" H N N 167 GDP "H5''" H N N 168 GDP "H4'" H N N 169 GDP "H3'" H N N 170 GDP "HO3'" H N N 171 GDP "H2'" H N N 172 GDP "HO2'" H N N 173 GDP "H1'" H N N 174 GDP H8 H N N 175 GDP HN1 H N N 176 GDP HN21 H N N 177 GDP HN22 H N N 178 GLN N N N N 179 GLN CA C N S 180 GLN C C N N 181 GLN O O N N 182 GLN CB C N N 183 GLN CG C N N 184 GLN CD C N N 185 GLN OE1 O N N 186 GLN NE2 N N N 187 GLN OXT O N N 188 GLN H H N N 189 GLN H2 H N N 190 GLN HA H N N 191 GLN HB2 H N N 192 GLN HB3 H N N 193 GLN HG2 H N N 194 GLN HG3 H N N 195 GLN HE21 H N N 196 GLN HE22 H N N 197 GLN HXT H N N 198 GLU N N N N 199 GLU CA C N S 200 GLU C C N N 201 GLU O O N N 202 GLU CB C N N 203 GLU CG C N N 204 GLU CD C N N 205 GLU OE1 O N N 206 GLU OE2 O N N 207 GLU OXT O N N 208 GLU H H N N 209 GLU H2 H N N 210 GLU HA H N N 211 GLU HB2 H N N 212 GLU HB3 H N N 213 GLU HG2 H N N 214 GLU HG3 H N N 215 GLU HE2 H N N 216 GLU HXT H N N 217 GLY N N N N 218 GLY CA C N N 219 GLY C C N N 220 GLY O O N N 221 GLY OXT O N N 222 GLY H H N N 223 GLY H2 H N N 224 GLY HA2 H N N 225 GLY HA3 H N N 226 GLY HXT H N N 227 H14 N N N N 228 H14 CA C N S 229 H14 C C N N 230 H14 O O N N 231 H14 CB C N R 232 H14 OB O N N 233 H14 CG C Y N 234 H14 CD1 C Y N 235 H14 CD2 C Y N 236 H14 CE1 C Y N 237 H14 CE2 C Y N 238 H14 CZ C Y N 239 H14 OXT O N N 240 H14 H H N N 241 H14 H2 H N N 242 H14 HA H N N 243 H14 HB H N N 244 H14 HXT H N N 245 H14 HOB H N N 246 H14 HD1 H N N 247 H14 HD2 H N N 248 H14 HE1 H N N 249 H14 HE2 H N N 250 H14 HZ H N N 251 HIS N N N N 252 HIS CA C N S 253 HIS C C N N 254 HIS O O N N 255 HIS CB C N N 256 HIS CG C Y N 257 HIS ND1 N Y N 258 HIS CD2 C Y N 259 HIS CE1 C Y N 260 HIS NE2 N Y N 261 HIS OXT O N N 262 HIS H H N N 263 HIS H2 H N N 264 HIS HA H N N 265 HIS HB2 H N N 266 HIS HB3 H N N 267 HIS HD1 H N N 268 HIS HD2 H N N 269 HIS HE1 H N N 270 HIS HE2 H N N 271 HIS HXT H N N 272 HOH O O N N 273 HOH H1 H N N 274 HOH H2 H N N 275 ILE N N N N 276 ILE CA C N S 277 ILE C C N N 278 ILE O O N N 279 ILE CB C N S 280 ILE CG1 C N N 281 ILE CG2 C N N 282 ILE CD1 C N N 283 ILE OXT O N N 284 ILE H H N N 285 ILE H2 H N N 286 ILE HA H N N 287 ILE HB H N N 288 ILE HG12 H N N 289 ILE HG13 H N N 290 ILE HG21 H N N 291 ILE HG22 H N N 292 ILE HG23 H N N 293 ILE HD11 H N N 294 ILE HD12 H N N 295 ILE HD13 H N N 296 ILE HXT H N N 297 LEU N N N N 298 LEU CA C N S 299 LEU C C N N 300 LEU O O N N 301 LEU CB C N N 302 LEU CG C N N 303 LEU CD1 C N N 304 LEU CD2 C N N 305 LEU OXT O N N 306 LEU H H N N 307 LEU H2 H N N 308 LEU HA H N N 309 LEU HB2 H N N 310 LEU HB3 H N N 311 LEU HG H N N 312 LEU HD11 H N N 313 LEU HD12 H N N 314 LEU HD13 H N N 315 LEU HD21 H N N 316 LEU HD22 H N N 317 LEU HD23 H N N 318 LEU HXT H N N 319 LYS N N N N 320 LYS CA C N S 321 LYS C C N N 322 LYS O O N N 323 LYS CB C N N 324 LYS CG C N N 325 LYS CD C N N 326 LYS CE C N N 327 LYS NZ N N N 328 LYS OXT O N N 329 LYS H H N N 330 LYS H2 H N N 331 LYS HA H N N 332 LYS HB2 H N N 333 LYS HB3 H N N 334 LYS HG2 H N N 335 LYS HG3 H N N 336 LYS HD2 H N N 337 LYS HD3 H N N 338 LYS HE2 H N N 339 LYS HE3 H N N 340 LYS HZ1 H N N 341 LYS HZ2 H N N 342 LYS HZ3 H N N 343 LYS HXT H N N 344 MET N N N N 345 MET CA C N S 346 MET C C N N 347 MET O O N N 348 MET CB C N N 349 MET CG C N N 350 MET SD S N N 351 MET CE C N N 352 MET OXT O N N 353 MET H H N N 354 MET H2 H N N 355 MET HA H N N 356 MET HB2 H N N 357 MET HB3 H N N 358 MET HG2 H N N 359 MET HG3 H N N 360 MET HE1 H N N 361 MET HE2 H N N 362 MET HE3 H N N 363 MET HXT H N N 364 MG MG MG N N 365 MH6 N N N N 366 MH6 CA C N N 367 MH6 C C N N 368 MH6 CB C N N 369 MH6 OG O N N 370 MH6 O O N N 371 MH6 OXT O N N 372 MH6 H H N N 373 MH6 HB2 H N N 374 MH6 HB3 H N N 375 MH6 HXT H N N 376 MH6 HG H N N 377 NH2 N N N N 378 NH2 HN1 H N N 379 NH2 HN2 H N N 380 PHE N N N N 381 PHE CA C N S 382 PHE C C N N 383 PHE O O N N 384 PHE CB C N N 385 PHE CG C Y N 386 PHE CD1 C Y N 387 PHE CD2 C Y N 388 PHE CE1 C Y N 389 PHE CE2 C Y N 390 PHE CZ C Y N 391 PHE OXT O N N 392 PHE H H N N 393 PHE H2 H N N 394 PHE HA H N N 395 PHE HB2 H N N 396 PHE HB3 H N N 397 PHE HD1 H N N 398 PHE HD2 H N N 399 PHE HE1 H N N 400 PHE HE2 H N N 401 PHE HZ H N N 402 PHE HXT H N N 403 PRO N N N N 404 PRO CA C N S 405 PRO C C N N 406 PRO O O N N 407 PRO CB C N N 408 PRO CG C N N 409 PRO CD C N N 410 PRO OXT O N N 411 PRO H H N N 412 PRO HA H N N 413 PRO HB2 H N N 414 PRO HB3 H N N 415 PRO HG2 H N N 416 PRO HG3 H N N 417 PRO HD2 H N N 418 PRO HD3 H N N 419 PRO HXT H N N 420 SER N N N N 421 SER CA C N S 422 SER C C N N 423 SER O O N N 424 SER CB C N N 425 SER OG O N N 426 SER OXT O N N 427 SER H H N N 428 SER H2 H N N 429 SER HA H N N 430 SER HB2 H N N 431 SER HB3 H N N 432 SER HG H N N 433 SER HXT H N N 434 SO4 S S N N 435 SO4 O1 O N N 436 SO4 O2 O N N 437 SO4 O3 O N N 438 SO4 O4 O N N 439 THR N N N N 440 THR CA C N S 441 THR C C N N 442 THR O O N N 443 THR CB C N R 444 THR OG1 O N N 445 THR CG2 C N N 446 THR OXT O N N 447 THR H H N N 448 THR H2 H N N 449 THR HA H N N 450 THR HB H N N 451 THR HG1 H N N 452 THR HG21 H N N 453 THR HG22 H N N 454 THR HG23 H N N 455 THR HXT H N N 456 TRP N N N N 457 TRP CA C N S 458 TRP C C N N 459 TRP O O N N 460 TRP CB C N N 461 TRP CG C Y N 462 TRP CD1 C Y N 463 TRP CD2 C Y N 464 TRP NE1 N Y N 465 TRP CE2 C Y N 466 TRP CE3 C Y N 467 TRP CZ2 C Y N 468 TRP CZ3 C Y N 469 TRP CH2 C Y N 470 TRP OXT O N N 471 TRP H H N N 472 TRP H2 H N N 473 TRP HA H N N 474 TRP HB2 H N N 475 TRP HB3 H N N 476 TRP HD1 H N N 477 TRP HE1 H N N 478 TRP HE3 H N N 479 TRP HZ2 H N N 480 TRP HZ3 H N N 481 TRP HH2 H N N 482 TRP HXT H N N 483 TYR N N N N 484 TYR CA C N S 485 TYR C C N N 486 TYR O O N N 487 TYR CB C N N 488 TYR CG C Y N 489 TYR CD1 C Y N 490 TYR CD2 C Y N 491 TYR CE1 C Y N 492 TYR CE2 C Y N 493 TYR CZ C Y N 494 TYR OH O N N 495 TYR OXT O N N 496 TYR H H N N 497 TYR H2 H N N 498 TYR HA H N N 499 TYR HB2 H N N 500 TYR HB3 H N N 501 TYR HD1 H N N 502 TYR HD2 H N N 503 TYR HE1 H N N 504 TYR HE2 H N N 505 TYR HH H N N 506 TYR HXT H N N 507 VAL N N N N 508 VAL CA C N S 509 VAL C C N N 510 VAL O O N N 511 VAL CB C N N 512 VAL CG1 C N N 513 VAL CG2 C N N 514 VAL OXT O N N 515 VAL H H N N 516 VAL H2 H N N 517 VAL HA H N N 518 VAL HB H N N 519 VAL HG11 H N N 520 VAL HG12 H N N 521 VAL HG13 H N N 522 VAL HG21 H N N 523 VAL HG22 H N N 524 VAL HG23 H N N 525 VAL HXT H N N 526 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 05N N CA sing N N 1 05N N H sing N N 2 05N CA C20 sing N N 3 05N CA C sing N N 4 05N CA HA sing N N 5 05N C20 C53 sing N N 6 05N C20 H16 sing N N 7 05N C21 C20 sing N N 8 05N C21 H17 sing N N 9 05N C OXT sing N N 10 05N C O doub N N 11 05N O9 C21 sing N N 12 05N O9 H40 sing N N 13 05N C52 N sing N N 14 05N C52 C21 sing N N 15 05N C52 H41 sing N N 16 05N C52 H42 sing N N 17 05N C53 H43 sing N N 18 05N C53 H44 sing N N 19 05N C53 H45 sing N N 20 05N OXT HXT sing N N 21 ALA N CA sing N N 22 ALA N H sing N N 23 ALA N H2 sing N N 24 ALA CA C sing N N 25 ALA CA CB sing N N 26 ALA CA HA sing N N 27 ALA C O doub N N 28 ALA C OXT sing N N 29 ALA CB HB1 sing N N 30 ALA CB HB2 sing N N 31 ALA CB HB3 sing N N 32 ALA OXT HXT sing N N 33 ARG N CA sing N N 34 ARG N H sing N N 35 ARG N H2 sing N N 36 ARG CA C sing N N 37 ARG CA CB sing N N 38 ARG CA HA sing N N 39 ARG C O doub N N 40 ARG C OXT sing N N 41 ARG CB CG sing N N 42 ARG CB HB2 sing N N 43 ARG CB HB3 sing N N 44 ARG CG CD sing N N 45 ARG CG HG2 sing N N 46 ARG CG HG3 sing N N 47 ARG CD NE sing N N 48 ARG CD HD2 sing N N 49 ARG CD HD3 sing N N 50 ARG NE CZ sing N N 51 ARG NE HE sing N N 52 ARG CZ NH1 sing N N 53 ARG CZ NH2 doub N N 54 ARG NH1 HH11 sing N N 55 ARG NH1 HH12 sing N N 56 ARG NH2 HH21 sing N N 57 ARG NH2 HH22 sing N N 58 ARG OXT HXT sing N N 59 ASN N CA sing N N 60 ASN N H sing N N 61 ASN N H2 sing N N 62 ASN CA C sing N N 63 ASN CA CB sing N N 64 ASN CA HA sing N N 65 ASN C O doub N N 66 ASN C OXT sing N N 67 ASN CB CG sing N N 68 ASN CB HB2 sing N N 69 ASN CB HB3 sing N N 70 ASN CG OD1 doub N N 71 ASN CG ND2 sing N N 72 ASN ND2 HD21 sing N N 73 ASN ND2 HD22 sing N N 74 ASN OXT HXT sing N N 75 ASP N CA sing N N 76 ASP N H sing N N 77 ASP N H2 sing N N 78 ASP CA C sing N N 79 ASP CA CB sing N N 80 ASP CA HA sing N N 81 ASP C O doub N N 82 ASP C OXT sing N N 83 ASP CB CG sing N N 84 ASP CB HB2 sing N N 85 ASP CB HB3 sing N N 86 ASP CG OD1 doub N N 87 ASP CG OD2 sing N N 88 ASP OD2 HD2 sing N N 89 ASP OXT HXT sing N N 90 BB6 N CA sing N N 91 BB6 CA C sing N N 92 BB6 CA CB doub N N 93 BB6 C O doub N N 94 BB6 C OXT sing N Z 95 BB6 CB SG sing N N 96 BB6 CB CD sing N N 97 BB6 N H sing N N 98 BB6 N H2 sing N N 99 BB6 OXT HXT sing N N 100 BB6 SG HG sing N N 101 BB6 CD HD1C sing N N 102 BB6 CD HD2C sing N N 103 BB6 CD HD3C sing N N 104 BB9 N CA sing N N 105 BB9 CA C sing N N 106 BB9 CA CB doub N N 107 BB9 C O doub N N 108 BB9 C OXT sing N Z 109 BB9 CB SG sing N N 110 BB9 N H sing N N 111 BB9 N H2 sing N N 112 BB9 CB HB sing N N 113 BB9 OXT HXT sing N N 114 BB9 SG HG sing N N 115 CYS N CA sing N N 116 CYS N H sing N N 117 CYS N H2 sing N N 118 CYS CA C sing N N 119 CYS CA CB sing N N 120 CYS CA HA sing N N 121 CYS C O doub N N 122 CYS C OXT sing N N 123 CYS CB SG sing N N 124 CYS CB HB2 sing N N 125 CYS CB HB3 sing N N 126 CYS SG HG sing N N 127 CYS OXT HXT sing N N 128 GDP PB O1B doub N N 129 GDP PB O2B sing N N 130 GDP PB O3B sing N N 131 GDP PB O3A sing N N 132 GDP O2B HOB2 sing N N 133 GDP O3B HOB3 sing N N 134 GDP O3A PA sing N N 135 GDP PA O1A doub N N 136 GDP PA O2A sing N N 137 GDP PA "O5'" sing N N 138 GDP O2A HOA2 sing N N 139 GDP "O5'" "C5'" sing N N 140 GDP "C5'" "C4'" sing N N 141 GDP "C5'" "H5'" sing N N 142 GDP "C5'" "H5''" sing N N 143 GDP "C4'" "O4'" sing N N 144 GDP "C4'" "C3'" sing N N 145 GDP "C4'" "H4'" sing N N 146 GDP "O4'" "C1'" sing N N 147 GDP "C3'" "O3'" sing N N 148 GDP "C3'" "C2'" sing N N 149 GDP "C3'" "H3'" sing N N 150 GDP "O3'" "HO3'" sing N N 151 GDP "C2'" "O2'" sing N N 152 GDP "C2'" "C1'" sing N N 153 GDP "C2'" "H2'" sing N N 154 GDP "O2'" "HO2'" sing N N 155 GDP "C1'" N9 sing N N 156 GDP "C1'" "H1'" sing N N 157 GDP N9 C8 sing Y N 158 GDP N9 C4 sing Y N 159 GDP C8 N7 doub Y N 160 GDP C8 H8 sing N N 161 GDP N7 C5 sing Y N 162 GDP C5 C6 sing N N 163 GDP C5 C4 doub Y N 164 GDP C6 O6 doub N N 165 GDP C6 N1 sing N N 166 GDP N1 C2 sing N N 167 GDP N1 HN1 sing N N 168 GDP C2 N2 sing N N 169 GDP C2 N3 doub N N 170 GDP N2 HN21 sing N N 171 GDP N2 HN22 sing N N 172 GDP N3 C4 sing N N 173 GLN N CA sing N N 174 GLN N H sing N N 175 GLN N H2 sing N N 176 GLN CA C sing N N 177 GLN CA CB sing N N 178 GLN CA HA sing N N 179 GLN C O doub N N 180 GLN C OXT sing N N 181 GLN CB CG sing N N 182 GLN CB HB2 sing N N 183 GLN CB HB3 sing N N 184 GLN CG CD sing N N 185 GLN CG HG2 sing N N 186 GLN CG HG3 sing N N 187 GLN CD OE1 doub N N 188 GLN CD NE2 sing N N 189 GLN NE2 HE21 sing N N 190 GLN NE2 HE22 sing N N 191 GLN OXT HXT sing N N 192 GLU N CA sing N N 193 GLU N H sing N N 194 GLU N H2 sing N N 195 GLU CA C sing N N 196 GLU CA CB sing N N 197 GLU CA HA sing N N 198 GLU C O doub N N 199 GLU C OXT sing N N 200 GLU CB CG sing N N 201 GLU CB HB2 sing N N 202 GLU CB HB3 sing N N 203 GLU CG CD sing N N 204 GLU CG HG2 sing N N 205 GLU CG HG3 sing N N 206 GLU CD OE1 doub N N 207 GLU CD OE2 sing N N 208 GLU OE2 HE2 sing N N 209 GLU OXT HXT sing N N 210 GLY N CA sing N N 211 GLY N H sing N N 212 GLY N H2 sing N N 213 GLY CA C sing N N 214 GLY CA HA2 sing N N 215 GLY CA HA3 sing N N 216 GLY C O doub N N 217 GLY C OXT sing N N 218 GLY OXT HXT sing N N 219 H14 N CA sing N N 220 H14 CA C sing N N 221 H14 CA CB sing N N 222 H14 C O doub N N 223 H14 CB OB sing N N 224 H14 CB CG sing N N 225 H14 CG CD1 sing Y N 226 H14 CG CD2 doub Y N 227 H14 CD1 CE1 doub Y N 228 H14 CD2 CE2 sing Y N 229 H14 CE1 CZ sing Y N 230 H14 CE2 CZ doub Y N 231 H14 C OXT sing N N 232 H14 N H sing N N 233 H14 N H2 sing N N 234 H14 CA HA sing N N 235 H14 CB HB sing N N 236 H14 OB HOB sing N N 237 H14 CD1 HD1 sing N N 238 H14 CD2 HD2 sing N N 239 H14 CE1 HE1 sing N N 240 H14 CE2 HE2 sing N N 241 H14 CZ HZ sing N N 242 H14 OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 MH6 N CA doub N N 352 MH6 CA C sing N N 353 MH6 CA CB sing N N 354 MH6 C O doub N N 355 MH6 C OXT sing N N 356 MH6 CB OG sing N N 357 MH6 N H sing N N 358 MH6 CB HB2 sing N N 359 MH6 CB HB3 sing N N 360 MH6 OXT HXT sing N N 361 MH6 OG HG sing N N 362 NH2 N HN1 sing N N 363 NH2 N HN2 sing N N 364 PHE N CA sing N N 365 PHE N H sing N N 366 PHE N H2 sing N N 367 PHE CA C sing N N 368 PHE CA CB sing N N 369 PHE CA HA sing N N 370 PHE C O doub N N 371 PHE C OXT sing N N 372 PHE CB CG sing N N 373 PHE CB HB2 sing N N 374 PHE CB HB3 sing N N 375 PHE CG CD1 doub Y N 376 PHE CG CD2 sing Y N 377 PHE CD1 CE1 sing Y N 378 PHE CD1 HD1 sing N N 379 PHE CD2 CE2 doub Y N 380 PHE CD2 HD2 sing N N 381 PHE CE1 CZ doub Y N 382 PHE CE1 HE1 sing N N 383 PHE CE2 CZ sing Y N 384 PHE CE2 HE2 sing N N 385 PHE CZ HZ sing N N 386 PHE OXT HXT sing N N 387 PRO N CA sing N N 388 PRO N CD sing N N 389 PRO N H sing N N 390 PRO CA C sing N N 391 PRO CA CB sing N N 392 PRO CA HA sing N N 393 PRO C O doub N N 394 PRO C OXT sing N N 395 PRO CB CG sing N N 396 PRO CB HB2 sing N N 397 PRO CB HB3 sing N N 398 PRO CG CD sing N N 399 PRO CG HG2 sing N N 400 PRO CG HG3 sing N N 401 PRO CD HD2 sing N N 402 PRO CD HD3 sing N N 403 PRO OXT HXT sing N N 404 SER N CA sing N N 405 SER N H sing N N 406 SER N H2 sing N N 407 SER CA C sing N N 408 SER CA CB sing N N 409 SER CA HA sing N N 410 SER C O doub N N 411 SER C OXT sing N N 412 SER CB OG sing N N 413 SER CB HB2 sing N N 414 SER CB HB3 sing N N 415 SER OG HG sing N N 416 SER OXT HXT sing N N 417 SO4 S O1 doub N N 418 SO4 S O2 doub N N 419 SO4 S O3 sing N N 420 SO4 S O4 sing N N 421 THR N CA sing N N 422 THR N H sing N N 423 THR N H2 sing N N 424 THR CA C sing N N 425 THR CA CB sing N N 426 THR CA HA sing N N 427 THR C O doub N N 428 THR C OXT sing N N 429 THR CB OG1 sing N N 430 THR CB CG2 sing N N 431 THR CB HB sing N N 432 THR OG1 HG1 sing N N 433 THR CG2 HG21 sing N N 434 THR CG2 HG22 sing N N 435 THR CG2 HG23 sing N N 436 THR OXT HXT sing N N 437 TRP N CA sing N N 438 TRP N H sing N N 439 TRP N H2 sing N N 440 TRP CA C sing N N 441 TRP CA CB sing N N 442 TRP CA HA sing N N 443 TRP C O doub N N 444 TRP C OXT sing N N 445 TRP CB CG sing N N 446 TRP CB HB2 sing N N 447 TRP CB HB3 sing N N 448 TRP CG CD1 doub Y N 449 TRP CG CD2 sing Y N 450 TRP CD1 NE1 sing Y N 451 TRP CD1 HD1 sing N N 452 TRP CD2 CE2 doub Y N 453 TRP CD2 CE3 sing Y N 454 TRP NE1 CE2 sing Y N 455 TRP NE1 HE1 sing N N 456 TRP CE2 CZ2 sing Y N 457 TRP CE3 CZ3 doub Y N 458 TRP CE3 HE3 sing N N 459 TRP CZ2 CH2 doub Y N 460 TRP CZ2 HZ2 sing N N 461 TRP CZ3 CH2 sing Y N 462 TRP CZ3 HZ3 sing N N 463 TRP CH2 HH2 sing N N 464 TRP OXT HXT sing N N 465 TYR N CA sing N N 466 TYR N H sing N N 467 TYR N H2 sing N N 468 TYR CA C sing N N 469 TYR CA CB sing N N 470 TYR CA HA sing N N 471 TYR C O doub N N 472 TYR C OXT sing N N 473 TYR CB CG sing N N 474 TYR CB HB2 sing N N 475 TYR CB HB3 sing N N 476 TYR CG CD1 doub Y N 477 TYR CG CD2 sing Y N 478 TYR CD1 CE1 sing Y N 479 TYR CD1 HD1 sing N N 480 TYR CD2 CE2 doub Y N 481 TYR CD2 HD2 sing N N 482 TYR CE1 CZ doub Y N 483 TYR CE1 HE1 sing N N 484 TYR CE2 CZ sing Y N 485 TYR CE2 HE2 sing N N 486 TYR CZ OH sing N N 487 TYR OH HH sing N N 488 TYR OXT HXT sing N N 489 VAL N CA sing N N 490 VAL N H sing N N 491 VAL N H2 sing N N 492 VAL CA C sing N N 493 VAL CA CB sing N N 494 VAL CA HA sing N N 495 VAL C O doub N N 496 VAL C OXT sing N N 497 VAL CB CG1 sing N N 498 VAL CB CG2 sing N N 499 VAL CB HB sing N N 500 VAL CG1 HG11 sing N N 501 VAL CG1 HG12 sing N N 502 VAL CG1 HG13 sing N N 503 VAL CG2 HG21 sing N N 504 VAL CG2 HG22 sing N N 505 VAL CG2 HG23 sing N N 506 VAL OXT HXT sing N N 507 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 "GUANOSINE-5'-DIPHOSPHATE" GDP 5 'SULFATE ION' SO4 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1D8T _pdbx_initial_refinement_model.details ? #