HEADER OXIDOREDUCTASE 19-JUL-12 4G6G TITLE CRYSTAL STRUCTURE OF NDH WITH TRT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROTENONE-INSENSITIVE NADH-UBIQUINONE OXIDOREDUCTASE, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: INTERNAL NADH DEHYDROGENASE; COMPND 6 EC: 1.6.5.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: NDI1, YML120C, YM7056.06C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMANN FOLD, ELECTRON TRANSFER, TRT, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR W.LI,Y.FENG,J.GE,M.YANG REVDAT 3 20-MAR-24 4G6G 1 REMARK SEQADV LINK REVDAT 2 05-DEC-12 4G6G 1 JRNL REVDAT 1 24-OCT-12 4G6G 0 JRNL AUTH Y.FENG,W.LI,J.LI,J.WANG,J.GE,D.XU,Y.LIU,K.WU,Q.ZENG,J.W.WU, JRNL AUTH 2 C.TIAN,B.ZHOU,M.YANG JRNL TITL STRUCTURAL INSIGHT INTO THE TYPE-II MITOCHONDRIAL NADH JRNL TITL 2 DEHYDROGENASES. JRNL REF NATURE V. 491 478 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 23086143 JRNL DOI 10.1038/NATURE11541 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.3_473) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 62479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5935 - 6.7825 0.98 2953 144 0.2122 0.1831 REMARK 3 2 6.7825 - 5.3895 0.99 2746 272 0.2175 0.2726 REMARK 3 3 5.3895 - 4.7100 0.99 2981 0 0.1610 0.0000 REMARK 3 4 4.7100 - 4.2801 0.99 2644 315 0.1330 0.1679 REMARK 3 5 4.2801 - 3.9738 0.99 2964 0 0.1395 0.0000 REMARK 3 6 3.9738 - 3.7398 0.99 2555 394 0.1441 0.1874 REMARK 3 7 3.7398 - 3.5526 0.99 2925 0 0.1633 0.0000 REMARK 3 8 3.5526 - 3.3981 0.99 2927 0 0.1787 0.0000 REMARK 3 9 3.3981 - 3.2674 0.98 2496 416 0.2033 0.2314 REMARK 3 10 3.2674 - 3.1547 0.97 2865 0 0.2147 0.0000 REMARK 3 11 3.1547 - 3.0561 0.96 2846 0 0.2127 0.0000 REMARK 3 12 3.0561 - 2.9688 0.96 2426 404 0.2173 0.2971 REMARK 3 13 2.9688 - 2.8907 0.95 2808 0 0.2186 0.0000 REMARK 3 14 2.8907 - 2.8202 0.94 2765 0 0.2289 0.0000 REMARK 3 15 2.8202 - 2.7561 0.92 2251 480 0.2225 0.2960 REMARK 3 16 2.7561 - 2.6975 0.91 2714 0 0.2163 0.0000 REMARK 3 17 2.6975 - 2.6435 0.89 2608 0 0.2338 0.0000 REMARK 3 18 2.6435 - 2.5937 0.85 2479 0 0.2413 0.0000 REMARK 3 19 2.5937 - 2.5474 0.83 1980 448 0.2343 0.2995 REMARK 3 20 2.5474 - 2.5042 0.78 2317 0 0.2468 0.0000 REMARK 3 21 2.5042 - 2.4638 0.75 2201 0 0.2519 0.0000 REMARK 3 22 2.4638 - 2.4259 0.73 2143 0 0.2744 0.0000 REMARK 3 23 2.4259 - 2.3902 0.68 1633 379 0.2942 0.3421 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 39.15 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.35920 REMARK 3 B22 (A**2) : -7.67050 REMARK 3 B33 (A**2) : -3.68870 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7779 REMARK 3 ANGLE : 1.339 10563 REMARK 3 CHIRALITY : 0.103 1170 REMARK 3 PLANARITY : 0.005 1318 REMARK 3 DIHEDRAL : 17.245 2882 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 36:513 REMARK 3 ORIGIN FOR THE GROUP (A): 40.0109 27.3817 3.4509 REMARK 3 T TENSOR REMARK 3 T11: 0.0922 T22: 0.0518 REMARK 3 T33: 0.1125 T12: 0.0149 REMARK 3 T13: 0.0114 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.3505 L22: 0.8390 REMARK 3 L33: 1.1047 L12: -0.2376 REMARK 3 L13: 0.2571 L23: 0.0120 REMARK 3 S TENSOR REMARK 3 S11: -0.0162 S12: -0.0226 S13: 0.0373 REMARK 3 S21: 0.1500 S22: -0.0271 S23: -0.1273 REMARK 3 S31: 0.2224 S32: 0.0689 S33: 0.0398 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID 42:513 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6658 37.7433 -32.4600 REMARK 3 T TENSOR REMARK 3 T11: 0.2034 T22: 0.1899 REMARK 3 T33: 0.0340 T12: 0.1019 REMARK 3 T13: 0.0627 T23: 0.0624 REMARK 3 L TENSOR REMARK 3 L11: 1.3506 L22: 1.0001 REMARK 3 L33: 0.3086 L12: -0.5835 REMARK 3 L13: 0.3795 L23: -0.3867 REMARK 3 S TENSOR REMARK 3 S11: 0.1622 S12: 0.4418 S13: 0.0705 REMARK 3 S21: -0.4104 S22: -0.2776 S23: -0.0870 REMARK 3 S31: 0.1575 S32: 0.0974 S33: 0.0421 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 36:417 OR RESSEQ REMARK 3 426:513 OR RESSEQ 601:601 OR RESSEQ 701: REMARK 3 704 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 42:419 OR RESSEQ REMARK 3 429:513 OR RESSEQ 601:601 OR RESSEQ 701: REMARK 3 704 ) REMARK 3 ATOM PAIRS NUMBER : 3696 REMARK 3 RMSD : 0.059 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G6G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000073797. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65729 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 35.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.8M POTASSIUM FORMATE, 2% W/V REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000, PH 4.2 , VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.12500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.12500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 66.46050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 115.29900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 66.46050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 115.29900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.12500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 66.46050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 115.29900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.12500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 66.46050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 115.29900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -129.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 714 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 857 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 725 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 880 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 12 REMARK 465 ARG A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 THR A 25 REMARK 465 ARG A 26 REMARK 465 SER A 27 REMARK 465 THR A 28 REMARK 465 GLY A 29 REMARK 465 VAL A 30 REMARK 465 GLU A 31 REMARK 465 ASN A 32 REMARK 465 SER A 33 REMARK 465 GLY A 34 REMARK 465 ALA A 35 REMARK 465 LYS A 418 REMARK 465 ASN A 419 REMARK 465 LEU A 420 REMARK 465 SER A 421 REMARK 465 SER A 422 REMARK 465 ARG A 423 REMARK 465 LYS A 424 REMARK 465 ASP A 425 REMARK 465 MET B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 SER B 15 REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 HIS B 18 REMARK 465 HIS B 19 REMARK 465 HIS B 20 REMARK 465 HIS B 21 REMARK 465 GLY B 22 REMARK 465 SER B 23 REMARK 465 SER B 24 REMARK 465 THR B 25 REMARK 465 ARG B 26 REMARK 465 SER B 27 REMARK 465 THR B 28 REMARK 465 GLY B 29 REMARK 465 VAL B 30 REMARK 465 GLU B 31 REMARK 465 ASN B 32 REMARK 465 SER B 33 REMARK 465 GLY B 34 REMARK 465 ALA B 35 REMARK 465 GLY B 36 REMARK 465 PRO B 37 REMARK 465 THR B 38 REMARK 465 SER B 39 REMARK 465 PHE B 40 REMARK 465 LYS B 41 REMARK 465 LEU B 420 REMARK 465 SER B 421 REMARK 465 SER B 422 REMARK 465 ARG B 423 REMARK 465 LYS B 424 REMARK 465 ASP B 425 REMARK 465 LYS B 426 REMARK 465 ILE B 427 REMARK 465 ASP B 428 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 426 CG CD CE NZ REMARK 470 LYS B 418 CG CD CE NZ REMARK 470 ASN B 419 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PRO A 37 N GLY B 340 6555 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 226 NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 226 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 344 NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 344 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 454 NE - CZ - NH1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 454 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG B 226 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 226 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B 344 CD - NE - CZ ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG B 344 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG B 344 NE - CZ - NH2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ARG B 454 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG B 454 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG B 454 NE - CZ - NH2 ANGL. DEV. = -7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 41 105.50 -17.88 REMARK 500 SER A 61 42.22 -140.16 REMARK 500 GLU A 154 47.91 39.05 REMARK 500 ALA A 175 53.23 -144.17 REMARK 500 SER A 297 9.97 90.32 REMARK 500 ALA A 338 72.62 -115.61 REMARK 500 LYS A 361 -43.19 -132.29 REMARK 500 THR A 468 110.55 -160.72 REMARK 500 SER B 61 41.73 -141.42 REMARK 500 GLU B 154 47.98 39.00 REMARK 500 ALA B 175 49.66 -146.98 REMARK 500 SER B 297 11.26 92.76 REMARK 500 ALA B 338 70.14 -114.33 REMARK 500 LYS B 361 -43.31 -131.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 TRT A 601 REMARK 610 TRT A 602 REMARK 610 TRT B 601 REMARK 610 TRT B 602 REMARK 610 TRT B 603 REMARK 610 TRT B 604 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 606 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 89 O REMARK 620 2 FAD A 603 O2A 144.3 REMARK 620 3 HOH A 704 O 119.1 70.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 175 O REMARK 620 2 FAD A 603 O1P 94.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 381 O REMARK 620 2 FAD A 603 O2P 94.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 610 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 89 O REMARK 620 2 FAD B 607 O2A 144.7 REMARK 620 3 HOH B 727 O 121.1 69.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 606 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 116 O REMARK 620 2 LYS B 118 O 78.5 REMARK 620 3 HOH B 736 O 140.3 68.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 609 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 175 O REMARK 620 2 FAD B 607 O1P 94.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 333 O REMARK 620 2 HOH B 722 O 128.7 REMARK 620 3 HOH B 785 O 80.7 76.8 REMARK 620 4 HOH B 812 O 106.9 77.0 151.1 REMARK 620 5 HOH B 820 O 80.5 143.8 89.8 118.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 608 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 381 O REMARK 620 2 FAD B 607 O2P 93.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 611 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 383 OD2 REMARK 620 2 FAD B 607 O1A 119.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRT A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRT A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRT B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRT B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRT B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRT B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 611 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G6H RELATED DB: PDB REMARK 900 RELATED ID: 4G73 RELATED DB: PDB REMARK 900 RELATED ID: 4G74 RELATED DB: PDB DBREF 4G6G A 24 513 UNP P32340 NDI1_YEAST 24 513 DBREF 4G6G B 24 513 UNP P32340 NDI1_YEAST 24 513 SEQADV 4G6G MET A 12 UNP P32340 EXPRESSION TAG SEQADV 4G6G ARG A 13 UNP P32340 EXPRESSION TAG SEQADV 4G6G GLY A 14 UNP P32340 EXPRESSION TAG SEQADV 4G6G SER A 15 UNP P32340 EXPRESSION TAG SEQADV 4G6G HIS A 16 UNP P32340 EXPRESSION TAG SEQADV 4G6G HIS A 17 UNP P32340 EXPRESSION TAG SEQADV 4G6G HIS A 18 UNP P32340 EXPRESSION TAG SEQADV 4G6G HIS A 19 UNP P32340 EXPRESSION TAG SEQADV 4G6G HIS A 20 UNP P32340 EXPRESSION TAG SEQADV 4G6G HIS A 21 UNP P32340 EXPRESSION TAG SEQADV 4G6G GLY A 22 UNP P32340 EXPRESSION TAG SEQADV 4G6G SER A 23 UNP P32340 EXPRESSION TAG SEQADV 4G6G MET B 12 UNP P32340 EXPRESSION TAG SEQADV 4G6G ARG B 13 UNP P32340 EXPRESSION TAG SEQADV 4G6G GLY B 14 UNP P32340 EXPRESSION TAG SEQADV 4G6G SER B 15 UNP P32340 EXPRESSION TAG SEQADV 4G6G HIS B 16 UNP P32340 EXPRESSION TAG SEQADV 4G6G HIS B 17 UNP P32340 EXPRESSION TAG SEQADV 4G6G HIS B 18 UNP P32340 EXPRESSION TAG SEQADV 4G6G HIS B 19 UNP P32340 EXPRESSION TAG SEQADV 4G6G HIS B 20 UNP P32340 EXPRESSION TAG SEQADV 4G6G HIS B 21 UNP P32340 EXPRESSION TAG SEQADV 4G6G GLY B 22 UNP P32340 EXPRESSION TAG SEQADV 4G6G SER B 23 UNP P32340 EXPRESSION TAG SEQRES 1 A 502 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 A 502 THR ARG SER THR GLY VAL GLU ASN SER GLY ALA GLY PRO SEQRES 3 A 502 THR SER PHE LYS THR MET LYS VAL ILE ASP PRO GLN HIS SEQRES 4 A 502 SER ASP LYS PRO ASN VAL LEU ILE LEU GLY SER GLY TRP SEQRES 5 A 502 GLY ALA ILE SER PHE LEU LYS HIS ILE ASP THR LYS LYS SEQRES 6 A 502 TYR ASN VAL SER ILE ILE SER PRO ARG SER TYR PHE LEU SEQRES 7 A 502 PHE THR PRO LEU LEU PRO SER ALA PRO VAL GLY THR VAL SEQRES 8 A 502 ASP GLU LYS SER ILE ILE GLU PRO ILE VAL ASN PHE ALA SEQRES 9 A 502 LEU LYS LYS LYS GLY ASN VAL THR TYR TYR GLU ALA GLU SEQRES 10 A 502 ALA THR SER ILE ASN PRO ASP ARG ASN THR VAL THR ILE SEQRES 11 A 502 LYS SER LEU SER ALA VAL SER GLN LEU TYR GLN PRO GLU SEQRES 12 A 502 ASN HIS LEU GLY LEU HIS GLN ALA GLU PRO ALA GLU ILE SEQRES 13 A 502 LYS TYR ASP TYR LEU ILE SER ALA VAL GLY ALA GLU PRO SEQRES 14 A 502 ASN THR PHE GLY ILE PRO GLY VAL THR ASP TYR GLY HIS SEQRES 15 A 502 PHE LEU LYS GLU ILE PRO ASN SER LEU GLU ILE ARG ARG SEQRES 16 A 502 THR PHE ALA ALA ASN LEU GLU LYS ALA ASN LEU LEU PRO SEQRES 17 A 502 LYS GLY ASP PRO GLU ARG ARG ARG LEU LEU SER ILE VAL SEQRES 18 A 502 VAL VAL GLY GLY GLY PRO THR GLY VAL GLU ALA ALA GLY SEQRES 19 A 502 GLU LEU GLN ASP TYR VAL HIS GLN ASP LEU ARG LYS PHE SEQRES 20 A 502 LEU PRO ALA LEU ALA GLU GLU VAL GLN ILE HIS LEU VAL SEQRES 21 A 502 GLU ALA LEU PRO ILE VAL LEU ASN MET PHE GLU LYS LYS SEQRES 22 A 502 LEU SER SER TYR ALA GLN SER HIS LEU GLU ASN THR SER SEQRES 23 A 502 ILE LYS VAL HIS LEU ARG THR ALA VAL ALA LYS VAL GLU SEQRES 24 A 502 GLU LYS GLN LEU LEU ALA LYS THR LYS HIS GLU ASP GLY SEQRES 25 A 502 LYS ILE THR GLU GLU THR ILE PRO TYR GLY THR LEU ILE SEQRES 26 A 502 TRP ALA THR GLY ASN LYS ALA ARG PRO VAL ILE THR ASP SEQRES 27 A 502 LEU PHE LYS LYS ILE PRO GLU GLN ASN SER SER LYS ARG SEQRES 28 A 502 GLY LEU ALA VAL ASN ASP PHE LEU GLN VAL LYS GLY SER SEQRES 29 A 502 ASN ASN ILE PHE ALA ILE GLY ASP ASN ALA PHE ALA GLY SEQRES 30 A 502 LEU PRO PRO THR ALA GLN VAL ALA HIS GLN GLU ALA GLU SEQRES 31 A 502 TYR LEU ALA LYS ASN PHE ASP LYS MET ALA GLN ILE PRO SEQRES 32 A 502 ASN PHE GLN LYS ASN LEU SER SER ARG LYS ASP LYS ILE SEQRES 33 A 502 ASP LEU LEU PHE GLU GLU ASN ASN PHE LYS PRO PHE LYS SEQRES 34 A 502 TYR ASN ASP LEU GLY ALA LEU ALA TYR LEU GLY SER GLU SEQRES 35 A 502 ARG ALA ILE ALA THR ILE ARG SER GLY LYS ARG THR PHE SEQRES 36 A 502 TYR THR GLY GLY GLY LEU MET THR PHE TYR LEU TRP ARG SEQRES 37 A 502 ILE LEU TYR LEU SER MET ILE LEU SER ALA ARG SER ARG SEQRES 38 A 502 LEU LYS VAL PHE PHE ASP TRP ILE LYS LEU ALA PHE PHE SEQRES 39 A 502 LYS ARG ASP PHE PHE LYS GLY LEU SEQRES 1 B 502 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 B 502 THR ARG SER THR GLY VAL GLU ASN SER GLY ALA GLY PRO SEQRES 3 B 502 THR SER PHE LYS THR MET LYS VAL ILE ASP PRO GLN HIS SEQRES 4 B 502 SER ASP LYS PRO ASN VAL LEU ILE LEU GLY SER GLY TRP SEQRES 5 B 502 GLY ALA ILE SER PHE LEU LYS HIS ILE ASP THR LYS LYS SEQRES 6 B 502 TYR ASN VAL SER ILE ILE SER PRO ARG SER TYR PHE LEU SEQRES 7 B 502 PHE THR PRO LEU LEU PRO SER ALA PRO VAL GLY THR VAL SEQRES 8 B 502 ASP GLU LYS SER ILE ILE GLU PRO ILE VAL ASN PHE ALA SEQRES 9 B 502 LEU LYS LYS LYS GLY ASN VAL THR TYR TYR GLU ALA GLU SEQRES 10 B 502 ALA THR SER ILE ASN PRO ASP ARG ASN THR VAL THR ILE SEQRES 11 B 502 LYS SER LEU SER ALA VAL SER GLN LEU TYR GLN PRO GLU SEQRES 12 B 502 ASN HIS LEU GLY LEU HIS GLN ALA GLU PRO ALA GLU ILE SEQRES 13 B 502 LYS TYR ASP TYR LEU ILE SER ALA VAL GLY ALA GLU PRO SEQRES 14 B 502 ASN THR PHE GLY ILE PRO GLY VAL THR ASP TYR GLY HIS SEQRES 15 B 502 PHE LEU LYS GLU ILE PRO ASN SER LEU GLU ILE ARG ARG SEQRES 16 B 502 THR PHE ALA ALA ASN LEU GLU LYS ALA ASN LEU LEU PRO SEQRES 17 B 502 LYS GLY ASP PRO GLU ARG ARG ARG LEU LEU SER ILE VAL SEQRES 18 B 502 VAL VAL GLY GLY GLY PRO THR GLY VAL GLU ALA ALA GLY SEQRES 19 B 502 GLU LEU GLN ASP TYR VAL HIS GLN ASP LEU ARG LYS PHE SEQRES 20 B 502 LEU PRO ALA LEU ALA GLU GLU VAL GLN ILE HIS LEU VAL SEQRES 21 B 502 GLU ALA LEU PRO ILE VAL LEU ASN MET PHE GLU LYS LYS SEQRES 22 B 502 LEU SER SER TYR ALA GLN SER HIS LEU GLU ASN THR SER SEQRES 23 B 502 ILE LYS VAL HIS LEU ARG THR ALA VAL ALA LYS VAL GLU SEQRES 24 B 502 GLU LYS GLN LEU LEU ALA LYS THR LYS HIS GLU ASP GLY SEQRES 25 B 502 LYS ILE THR GLU GLU THR ILE PRO TYR GLY THR LEU ILE SEQRES 26 B 502 TRP ALA THR GLY ASN LYS ALA ARG PRO VAL ILE THR ASP SEQRES 27 B 502 LEU PHE LYS LYS ILE PRO GLU GLN ASN SER SER LYS ARG SEQRES 28 B 502 GLY LEU ALA VAL ASN ASP PHE LEU GLN VAL LYS GLY SER SEQRES 29 B 502 ASN ASN ILE PHE ALA ILE GLY ASP ASN ALA PHE ALA GLY SEQRES 30 B 502 LEU PRO PRO THR ALA GLN VAL ALA HIS GLN GLU ALA GLU SEQRES 31 B 502 TYR LEU ALA LYS ASN PHE ASP LYS MET ALA GLN ILE PRO SEQRES 32 B 502 ASN PHE GLN LYS ASN LEU SER SER ARG LYS ASP LYS ILE SEQRES 33 B 502 ASP LEU LEU PHE GLU GLU ASN ASN PHE LYS PRO PHE LYS SEQRES 34 B 502 TYR ASN ASP LEU GLY ALA LEU ALA TYR LEU GLY SER GLU SEQRES 35 B 502 ARG ALA ILE ALA THR ILE ARG SER GLY LYS ARG THR PHE SEQRES 36 B 502 TYR THR GLY GLY GLY LEU MET THR PHE TYR LEU TRP ARG SEQRES 37 B 502 ILE LEU TYR LEU SER MET ILE LEU SER ALA ARG SER ARG SEQRES 38 B 502 LEU LYS VAL PHE PHE ASP TRP ILE LYS LEU ALA PHE PHE SEQRES 39 B 502 LYS ARG ASP PHE PHE LYS GLY LEU HET TRT A 601 16 HET TRT A 602 20 HET FAD A 603 53 HET MG A 604 1 HET MG A 605 1 HET MG A 606 1 HET MG A 607 1 HET TRT B 601 20 HET TRT B 602 20 HET TRT B 603 20 HET TRT B 604 20 HET MG B 605 1 HET MG B 606 1 HET FAD B 607 53 HET MG B 608 1 HET MG B 609 1 HET MG B 610 1 HET MG B 611 1 HETNAM TRT FRAGMENT OF TRITON X-100 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM MG MAGNESIUM ION HETSYN TRT 1-{2-[2-(2-METHOXYETHOXY)ETHOXY]ETHOXY}-4-(1,1,3,3- HETSYN 2 TRT TETRAMETHYLBUTYL)BENZENE FORMUL 3 TRT 6(C21 H36 O4) FORMUL 5 FAD 2(C27 H33 N9 O15 P2) FORMUL 6 MG 10(MG 2+) FORMUL 21 HOH *464(H2 O) HELIX 1 1 GLY A 62 ILE A 72 1 11 HELIX 2 2 THR A 91 ALA A 97 5 7 HELIX 3 3 ASP A 103 SER A 106 5 4 HELIX 4 4 ILE A 111 LYS A 117 1 7 HELIX 5 5 PRO A 134 ARG A 136 5 3 HELIX 6 6 GLY A 187 GLY A 192 1 6 HELIX 7 7 GLU A 197 LEU A 218 1 22 HELIX 8 8 ASP A 222 LEU A 229 1 8 HELIX 9 9 GLY A 237 ASP A 254 1 18 HELIX 10 10 ASP A 254 LEU A 259 1 6 HELIX 11 11 LEU A 259 VAL A 266 1 8 HELIX 12 12 GLU A 282 THR A 296 1 15 HELIX 13 13 ARG A 344 ILE A 354 1 11 HELIX 14 14 PRO A 355 ASN A 358 5 4 HELIX 15 15 THR A 392 ALA A 411 1 20 HELIX 16 16 ILE A 427 ASN A 434 1 8 HELIX 17 17 LEU A 472 ILE A 486 1 15 HELIX 18 18 SER A 488 ALA A 503 1 16 HELIX 19 19 GLY B 62 ILE B 72 1 11 HELIX 20 20 THR B 91 ALA B 97 5 7 HELIX 21 21 ASP B 103 SER B 106 5 4 HELIX 22 22 ILE B 111 LYS B 117 1 7 HELIX 23 23 PRO B 134 ARG B 136 5 3 HELIX 24 24 GLY B 187 GLY B 192 1 6 HELIX 25 25 GLU B 197 LEU B 218 1 22 HELIX 26 26 ASP B 222 LEU B 229 1 8 HELIX 27 27 GLY B 237 ASP B 254 1 18 HELIX 28 28 ASP B 254 LEU B 259 1 6 HELIX 29 29 LEU B 259 VAL B 266 1 8 HELIX 30 30 GLU B 282 THR B 296 1 15 HELIX 31 31 ARG B 344 ILE B 354 1 11 HELIX 32 32 PRO B 355 ASN B 358 5 4 HELIX 33 33 THR B 392 ALA B 411 1 20 HELIX 34 34 ILE B 413 ASN B 419 1 7 HELIX 35 35 LEU B 430 ASN B 434 1 5 HELIX 36 36 LEU B 472 ILE B 486 1 15 HELIX 37 37 SER B 488 ALA B 503 1 16 SHEET 1 A 8 VAL A 45 ILE A 46 0 SHEET 2 A 8 ALA A 165 LYS A 168 1 O LYS A 168 N ILE A 46 SHEET 3 A 8 THR A 138 GLN A 149 -1 N ILE A 141 O ALA A 165 SHEET 4 A 8 VAL A 122 ASN A 133 -1 N SER A 131 O THR A 140 SHEET 5 A 8 ASN A 78 ILE A 82 1 N ILE A 81 O TYR A 125 SHEET 6 A 8 ASN A 55 LEU A 59 1 N VAL A 56 O ASN A 78 SHEET 7 A 8 TYR A 171 SER A 174 1 O ILE A 173 N LEU A 57 SHEET 8 A 8 ILE A 378 ALA A 380 1 O PHE A 379 N SER A 174 SHEET 1 B 2 TYR A 87 LEU A 89 0 SHEET 2 B 2 ILE A 108 PRO A 110 -1 O GLU A 109 N PHE A 88 SHEET 1 C 2 ALA A 178 PRO A 180 0 SHEET 2 C 2 ASN A 341 ALA A 343 -1 O LYS A 342 N GLU A 179 SHEET 1 D 5 HIS A 193 PHE A 194 0 SHEET 2 D 5 THR A 334 TRP A 337 1 O TRP A 337 N HIS A 193 SHEET 3 D 5 SER A 230 VAL A 234 1 N VAL A 232 O ILE A 336 SHEET 4 D 5 GLN A 267 VAL A 271 1 O HIS A 269 N VAL A 233 SHEET 5 D 5 LYS A 299 HIS A 301 1 O HIS A 301 N LEU A 270 SHEET 1 E 3 THR A 304 VAL A 309 0 SHEET 2 E 3 GLN A 313 LYS A 319 -1 O LEU A 315 N ALA A 307 SHEET 3 E 3 ILE A 325 PRO A 331 -1 O THR A 326 N THR A 318 SHEET 1 F 2 LEU A 364 ALA A 365 0 SHEET 2 F 2 ALA A 385 PHE A 386 1 O PHE A 386 N LEU A 364 SHEET 1 G 3 GLY A 445 TYR A 449 0 SHEET 2 G 3 ALA A 455 SER A 461 -1 O THR A 458 N ALA A 446 SHEET 3 G 3 ARG A 464 GLY A 471 -1 O PHE A 466 N ILE A 459 SHEET 1 H 8 LYS B 44 ILE B 46 0 SHEET 2 H 8 ALA B 165 LYS B 168 1 O LYS B 168 N ILE B 46 SHEET 3 H 8 THR B 138 GLN B 149 -1 N ILE B 141 O ALA B 165 SHEET 4 H 8 VAL B 122 ASN B 133 -1 N SER B 131 O THR B 140 SHEET 5 H 8 ASN B 78 SER B 83 1 N ILE B 81 O TYR B 125 SHEET 6 H 8 ASN B 55 LEU B 59 1 N VAL B 56 O ASN B 78 SHEET 7 H 8 TYR B 171 SER B 174 1 O ILE B 173 N LEU B 57 SHEET 8 H 8 ILE B 378 ALA B 380 1 O PHE B 379 N SER B 174 SHEET 1 I 2 TYR B 87 LEU B 89 0 SHEET 2 I 2 ILE B 108 PRO B 110 -1 O GLU B 109 N PHE B 88 SHEET 1 J 2 ALA B 178 PRO B 180 0 SHEET 2 J 2 ASN B 341 ALA B 343 -1 O LYS B 342 N GLU B 179 SHEET 1 K 5 HIS B 193 PHE B 194 0 SHEET 2 K 5 THR B 334 TRP B 337 1 O TRP B 337 N HIS B 193 SHEET 3 K 5 SER B 230 VAL B 234 1 N VAL B 232 O ILE B 336 SHEET 4 K 5 GLN B 267 VAL B 271 1 O HIS B 269 N VAL B 233 SHEET 5 K 5 LYS B 299 HIS B 301 1 O LYS B 299 N LEU B 270 SHEET 1 L 3 THR B 304 VAL B 309 0 SHEET 2 L 3 GLN B 313 LYS B 319 -1 O LEU B 315 N ALA B 307 SHEET 3 L 3 ILE B 325 PRO B 331 -1 O THR B 326 N THR B 318 SHEET 1 M 2 LEU B 364 ALA B 365 0 SHEET 2 M 2 ALA B 385 PHE B 386 1 O PHE B 386 N LEU B 364 SHEET 1 N 3 GLY B 445 TYR B 449 0 SHEET 2 N 3 ALA B 455 SER B 461 -1 O THR B 458 N ALA B 446 SHEET 3 N 3 ARG B 464 GLY B 471 -1 O PHE B 466 N ILE B 459 LINK O LEU A 89 MG MG A 606 1555 1555 2.88 LINK O ALA A 175 MG MG A 605 1555 1555 2.86 LINK O ILE A 381 MG MG A 604 1555 1555 2.85 LINK O2P FAD A 603 MG MG A 604 1555 1555 2.77 LINK O1P FAD A 603 MG MG A 605 1555 1555 2.69 LINK O2A FAD A 603 MG MG A 606 1555 1555 2.89 LINK O1A FAD A 603 MG MG A 607 1555 1555 2.95 LINK MG MG A 606 O HOH A 704 1555 1555 2.61 LINK O LEU B 89 MG MG B 610 1555 1555 2.87 LINK O LEU B 116 MG MG B 606 1555 1555 2.83 LINK O LYS B 118 MG MG B 606 1555 1555 2.89 LINK O ALA B 175 MG MG B 609 1555 1555 2.80 LINK O GLY B 333 MG MG B 605 1555 1555 2.59 LINK O ILE B 381 MG MG B 608 1555 1555 2.84 LINK OD2 ASP B 383 MG MG B 611 1555 1555 3.00 LINK MG MG B 605 O HOH B 722 1555 1555 2.88 LINK MG MG B 605 O HOH B 785 1555 1555 2.72 LINK MG MG B 605 O HOH B 812 1555 1555 2.61 LINK MG MG B 605 O HOH B 820 1555 1555 2.86 LINK MG MG B 606 O HOH B 736 1555 1555 2.64 LINK O2P FAD B 607 MG MG B 608 1555 1555 2.79 LINK O1P FAD B 607 MG MG B 609 1555 1555 2.64 LINK O2A FAD B 607 MG MG B 610 1555 1555 2.95 LINK O1A FAD B 607 MG MG B 611 1555 1555 2.92 LINK MG MG B 610 O HOH B 727 1555 1555 2.55 SITE 1 AC1 5 ARG A 479 ILE A 480 PHE A 496 TRP A 499 SITE 2 AC1 5 ALA A 503 SITE 1 AC2 8 TRP A 63 GLN A 394 HIS A 397 LEU A 444 SITE 2 AC2 8 GLY A 445 ALA A 446 LEU A 447 MET A 485 SITE 1 AC3 37 GLY A 60 SER A 61 GLY A 62 TRP A 63 SITE 2 AC3 37 GLY A 64 ILE A 82 SER A 83 PRO A 84 SITE 3 AC3 37 ARG A 85 THR A 91 PRO A 92 GLU A 128 SITE 4 AC3 37 ALA A 129 ALA A 175 VAL A 176 GLY A 177 SITE 5 AC3 37 LEU A 195 THR A 239 ARG A 344 GLY A 382 SITE 6 AC3 37 ASP A 383 PRO A 391 THR A 392 ALA A 393 SITE 7 AC3 37 GLN A 394 ALA A 396 TYR A 482 MG A 604 SITE 8 AC3 37 MG A 605 MG A 606 MG A 607 HOH A 704 SITE 9 AC3 37 HOH A 726 HOH A 752 HOH A 755 HOH A 895 SITE 10 AC3 37 HOH A 912 SITE 1 AC4 8 ALA A 175 VAL A 176 GLY A 177 ILE A 381 SITE 2 AC4 8 GLY A 382 ASP A 383 ASN A 384 FAD A 603 SITE 1 AC5 5 GLY A 62 GLY A 64 ALA A 65 ALA A 175 SITE 2 AC5 5 FAD A 603 SITE 1 AC6 5 GLY A 62 ARG A 85 LEU A 89 FAD A 603 SITE 2 AC6 5 HOH A 704 SITE 1 AC7 5 GLY A 177 ALA A 178 LYS A 196 ASP A 383 SITE 2 AC7 5 FAD A 603 SITE 1 AC8 5 ALA A 489 LEU A 493 ILE B 500 PHE B 504 SITE 2 AC8 5 TRT B 602 SITE 1 AC9 3 PHE A 505 ALA B 489 TRT B 601 SITE 1 BC1 4 ARG B 479 ILE B 480 PHE B 496 TRP B 499 SITE 1 BC2 7 GLN B 394 LEU B 444 GLY B 445 ALA B 446 SITE 2 BC2 7 LEU B 447 ILE B 459 MET B 485 SITE 1 BC3 5 GLY B 333 HOH B 722 HOH B 785 HOH B 812 SITE 2 BC3 5 HOH B 820 SITE 1 BC4 3 LEU B 116 LYS B 118 HOH B 736 SITE 1 BC5 36 GLY B 60 SER B 61 GLY B 62 TRP B 63 SITE 2 BC5 36 GLY B 64 ILE B 82 SER B 83 PRO B 84 SITE 3 BC5 36 ARG B 85 THR B 91 PRO B 92 GLU B 128 SITE 4 BC5 36 ALA B 129 ALA B 175 VAL B 176 GLY B 177 SITE 5 BC5 36 LEU B 195 LYS B 196 THR B 239 ARG B 344 SITE 6 BC5 36 GLY B 382 ASP B 383 PRO B 391 THR B 392 SITE 7 BC5 36 ALA B 393 GLN B 394 ALA B 396 TYR B 482 SITE 8 BC5 36 MG B 608 MG B 609 MG B 610 MG B 611 SITE 9 BC5 36 HOH B 704 HOH B 727 HOH B 793 HOH B 817 SITE 1 BC6 8 ALA B 175 VAL B 176 GLY B 177 ILE B 381 SITE 2 BC6 8 GLY B 382 ASP B 383 ASN B 384 FAD B 607 SITE 1 BC7 5 GLY B 62 GLY B 64 ALA B 65 ALA B 175 SITE 2 BC7 5 FAD B 607 SITE 1 BC8 5 GLY B 62 ARG B 85 LEU B 89 FAD B 607 SITE 2 BC8 5 HOH B 727 SITE 1 BC9 5 GLY B 177 ALA B 178 LYS B 196 ASP B 383 SITE 2 BC9 5 FAD B 607 CRYST1 132.921 230.598 112.250 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007523 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004337 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008909 0.00000