HEADER TRANSFERASE 19-JUL-12 4G6I TITLE CRYSTALLOGRAPHIC STRUCTURE OF TRIMERIC RIBOFLAVIN SYNTHASE FROM TITLE 2 BRUCELLA ABORTUS IN COMPLEX WITH ROSEOFLAVIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOFLAVIN SYNTHASE SUBUNIT ALPHA; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 2.5.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA ABORTUS; SOURCE 3 ORGANISM_TAXID: 235; SOURCE 4 GENE: RIBE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS TRANSFERASE, BETA BARREL, ALPHA + BETA PROTEIN, RIBOFLAVIN KEYWDS 2 BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR M.I.SERER,H.R.BONOMI,B.G.GUIMARAES,R.C.ROSSI,F.A.GOLDBAUM,S.KLINKE REVDAT 4 13-SEP-23 4G6I 1 REMARK SEQADV REVDAT 3 28-MAY-14 4G6I 1 JRNL REVDAT 2 14-MAY-14 4G6I 1 JRNL REVDAT 1 12-MAR-14 4G6I 0 JRNL AUTH M.I.SERER,H.R.BONOMI,B.G.GUIMARAES,R.C.ROSSI,F.A.GOLDBAUM, JRNL AUTH 2 S.KLINKE JRNL TITL CRYSTALLOGRAPHIC AND KINETIC STUDY OF RIBOFLAVIN SYNTHASE JRNL TITL 2 FROM BRUCELLA ABORTUS, A CHEMOTHERAPEUTIC TARGET WITH AN JRNL TITL 3 ENHANCED INTRINSIC FLEXIBILITY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 1419 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 24816110 JRNL DOI 10.1107/S1399004714005161 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 60193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3912 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4556 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.824 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4754 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6463 ; 0.945 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 594 ; 4.567 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;32.572 ;24.098 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 788 ;13.480 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;11.181 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 749 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3541 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4G6I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073799. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980110 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : KIRKPATRICK-BAEZ PAIR OF BI REMARK 200 -MORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60197 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 2.960 REMARK 200 R MERGE (I) : 0.02600 REMARK 200 R SYM (I) : 0.02600 REMARK 200 FOR THE DATA SET : 21.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.97 REMARK 200 R MERGE FOR SHELL (I) : 0.51400 REMARK 200 R SYM FOR SHELL (I) : 0.51400 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB 4E0F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 8000, 10% GLYCEROL, 0.5 M REMARK 280 POTASSIUM CHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.02000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.29000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.28500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.29000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.02000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.28500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 201 REMARK 465 LYS A 202 REMARK 465 LEU A 203 REMARK 465 GLU A 204 REMARK 465 HIS A 205 REMARK 465 HIS A 206 REMARK 465 HIS A 207 REMARK 465 HIS A 208 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 GLU B 55 REMARK 465 LYS B 56 REMARK 465 GLY B 57 REMARK 465 SER B 58 REMARK 465 LYS B 202 REMARK 465 LEU B 203 REMARK 465 GLU B 204 REMARK 465 HIS B 205 REMARK 465 HIS B 206 REMARK 465 HIS B 207 REMARK 465 HIS B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 TYR C 200 REMARK 465 GLN C 201 REMARK 465 LYS C 202 REMARK 465 LEU C 203 REMARK 465 GLU C 204 REMARK 465 HIS C 205 REMARK 465 HIS C 206 REMARK 465 HIS C 207 REMARK 465 HIS C 208 REMARK 465 HIS C 209 REMARK 465 HIS C 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 ASN A 59 CG OD1 ND2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 ASN B 19 CG OD1 ND2 REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 SER B 82 OG REMARK 470 ARG B 128 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 131 CG CD OE1 OE2 REMARK 470 GLU C 131 CG CD OE1 OE2 REMARK 470 GLU C 170 CG CD OE1 OE2 REMARK 470 GLN C 199 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 157 -110.18 59.94 REMARK 500 HIS B 101 -167.40 -128.51 REMARK 500 ALA B 157 -117.59 57.75 REMARK 500 LYS C 140 -6.40 72.72 REMARK 500 ALA C 157 -112.69 55.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RS3 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RS3 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RS3 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RS3 C 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FXU RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT LIGANDS (APO FORM) REMARK 900 RELATED ID: 4E0F RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH BOUND RIBOFLAVIN REMARK 900 RELATED ID: 1I8D RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 1KZL RELATED DB: PDB REMARK 900 THE SAME ENZYME FROM SCHIZOSACCHAROMYCES POMBE DBREF 4G6I A 1 202 UNP G8SX20 G8SX20_BRUAO 1 202 DBREF 4G6I B 1 202 UNP G8SX20 G8SX20_BRUAO 1 202 DBREF 4G6I C 1 202 UNP G8SX20 G8SX20_BRUAO 1 202 SEQADV 4G6I LEU A 203 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I GLU A 204 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS A 205 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS A 206 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS A 207 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS A 208 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS A 209 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS A 210 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I LEU B 203 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I GLU B 204 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS B 205 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS B 206 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS B 207 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS B 208 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS B 209 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS B 210 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I LEU C 203 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I GLU C 204 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS C 205 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS C 206 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS C 207 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS C 208 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS C 209 UNP G8SX20 EXPRESSION TAG SEQADV 4G6I HIS C 210 UNP G8SX20 EXPRESSION TAG SEQRES 1 A 210 MET PHE THR GLY ILE ILE THR ASP ILE GLY LYS VAL ASP SEQRES 2 A 210 ARG VAL LYS PRO LEU ASN GLU GLY VAL LEU LEU ARG ILE SEQRES 3 A 210 GLU THR ALA TYR ASP PRO GLU THR ILE GLU LEU GLY ALA SEQRES 4 A 210 SER ILE ALA CYS SER GLY VAL CYS LEU THR VAL VAL ALA SEQRES 5 A 210 LEU PRO GLU LYS GLY SER ASN ALA ARG TRP PHE GLU VAL SEQRES 6 A 210 GLU ALA TRP GLU GLU ALA LEU ARG LEU THR THR ILE SER SEQRES 7 A 210 SER TRP GLN SER GLY ARG LYS ILE ASN LEU GLU ARG SER SEQRES 8 A 210 LEU LYS LEU GLY ASP GLU MET GLY GLY HIS LEU VAL PHE SEQRES 9 A 210 GLY HIS VAL ASP GLY GLN ALA GLU ILE VAL GLU ARG LYS SEQRES 10 A 210 ASP GLU GLY ASP ALA VAL ARG PHE THR LEU ARG ALA PRO SEQRES 11 A 210 GLU GLU LEU ALA PRO PHE ILE ALA GLN LYS GLY SER VAL SEQRES 12 A 210 ALA LEU ASP GLY THR SER LEU THR VAL ASN GLY VAL ASN SEQRES 13 A 210 ALA ASN GLU PHE ASP VAL LEU LEU ILE ARG HIS SER LEU SEQRES 14 A 210 GLU VAL THR THR TRP GLY GLU ARG LYS ALA GLY ASP LYS SEQRES 15 A 210 VAL ASN ILE GLU ILE ASP GLN LEU ALA ARG TYR ALA ALA SEQRES 16 A 210 ARG LEU ALA GLN TYR GLN LYS LEU GLU HIS HIS HIS HIS SEQRES 17 A 210 HIS HIS SEQRES 1 B 210 MET PHE THR GLY ILE ILE THR ASP ILE GLY LYS VAL ASP SEQRES 2 B 210 ARG VAL LYS PRO LEU ASN GLU GLY VAL LEU LEU ARG ILE SEQRES 3 B 210 GLU THR ALA TYR ASP PRO GLU THR ILE GLU LEU GLY ALA SEQRES 4 B 210 SER ILE ALA CYS SER GLY VAL CYS LEU THR VAL VAL ALA SEQRES 5 B 210 LEU PRO GLU LYS GLY SER ASN ALA ARG TRP PHE GLU VAL SEQRES 6 B 210 GLU ALA TRP GLU GLU ALA LEU ARG LEU THR THR ILE SER SEQRES 7 B 210 SER TRP GLN SER GLY ARG LYS ILE ASN LEU GLU ARG SER SEQRES 8 B 210 LEU LYS LEU GLY ASP GLU MET GLY GLY HIS LEU VAL PHE SEQRES 9 B 210 GLY HIS VAL ASP GLY GLN ALA GLU ILE VAL GLU ARG LYS SEQRES 10 B 210 ASP GLU GLY ASP ALA VAL ARG PHE THR LEU ARG ALA PRO SEQRES 11 B 210 GLU GLU LEU ALA PRO PHE ILE ALA GLN LYS GLY SER VAL SEQRES 12 B 210 ALA LEU ASP GLY THR SER LEU THR VAL ASN GLY VAL ASN SEQRES 13 B 210 ALA ASN GLU PHE ASP VAL LEU LEU ILE ARG HIS SER LEU SEQRES 14 B 210 GLU VAL THR THR TRP GLY GLU ARG LYS ALA GLY ASP LYS SEQRES 15 B 210 VAL ASN ILE GLU ILE ASP GLN LEU ALA ARG TYR ALA ALA SEQRES 16 B 210 ARG LEU ALA GLN TYR GLN LYS LEU GLU HIS HIS HIS HIS SEQRES 17 B 210 HIS HIS SEQRES 1 C 210 MET PHE THR GLY ILE ILE THR ASP ILE GLY LYS VAL ASP SEQRES 2 C 210 ARG VAL LYS PRO LEU ASN GLU GLY VAL LEU LEU ARG ILE SEQRES 3 C 210 GLU THR ALA TYR ASP PRO GLU THR ILE GLU LEU GLY ALA SEQRES 4 C 210 SER ILE ALA CYS SER GLY VAL CYS LEU THR VAL VAL ALA SEQRES 5 C 210 LEU PRO GLU LYS GLY SER ASN ALA ARG TRP PHE GLU VAL SEQRES 6 C 210 GLU ALA TRP GLU GLU ALA LEU ARG LEU THR THR ILE SER SEQRES 7 C 210 SER TRP GLN SER GLY ARG LYS ILE ASN LEU GLU ARG SER SEQRES 8 C 210 LEU LYS LEU GLY ASP GLU MET GLY GLY HIS LEU VAL PHE SEQRES 9 C 210 GLY HIS VAL ASP GLY GLN ALA GLU ILE VAL GLU ARG LYS SEQRES 10 C 210 ASP GLU GLY ASP ALA VAL ARG PHE THR LEU ARG ALA PRO SEQRES 11 C 210 GLU GLU LEU ALA PRO PHE ILE ALA GLN LYS GLY SER VAL SEQRES 12 C 210 ALA LEU ASP GLY THR SER LEU THR VAL ASN GLY VAL ASN SEQRES 13 C 210 ALA ASN GLU PHE ASP VAL LEU LEU ILE ARG HIS SER LEU SEQRES 14 C 210 GLU VAL THR THR TRP GLY GLU ARG LYS ALA GLY ASP LYS SEQRES 15 C 210 VAL ASN ILE GLU ILE ASP GLN LEU ALA ARG TYR ALA ALA SEQRES 16 C 210 ARG LEU ALA GLN TYR GLN LYS LEU GLU HIS HIS HIS HIS SEQRES 17 C 210 HIS HIS HET RS3 A 301 29 HET RS3 A 302 29 HET RS3 B 301 29 HET RS3 C 301 29 HETNAM RS3 1-DEOXY-1-[8-(DIMETHYLAMINO)-7-METHYL-2,4-DIOXO-3,4- HETNAM 2 RS3 DIHYDROBENZO[G]PTERIDIN-10(2H)-YL]-D-RIBITOL HETSYN RS3 ROSEOFLAVIN FORMUL 4 RS3 4(C18 H23 N5 O6) FORMUL 8 HOH *240(H2 O) HELIX 1 1 ASP A 31 ILE A 35 5 5 HELIX 2 2 TRP A 68 THR A 75 1 8 HELIX 3 3 THR A 76 TRP A 80 5 5 HELIX 4 4 LEU A 133 ILE A 137 5 5 HELIX 5 5 ILE A 165 THR A 172 1 8 HELIX 6 6 THR A 173 ARG A 177 5 5 HELIX 7 7 ASP A 188 GLN A 199 1 12 HELIX 8 8 ASP B 31 ILE B 35 5 5 HELIX 9 9 TRP B 68 THR B 75 1 8 HELIX 10 10 THR B 76 TRP B 80 5 5 HELIX 11 11 LEU B 133 ILE B 137 5 5 HELIX 12 12 ILE B 165 THR B 172 1 8 HELIX 13 13 THR B 173 ARG B 177 5 5 HELIX 14 14 ASP B 188 GLN B 201 1 14 HELIX 15 15 ASP C 31 ILE C 35 5 5 HELIX 16 16 TRP C 68 THR C 75 1 8 HELIX 17 17 THR C 76 TRP C 80 5 5 HELIX 18 18 LEU C 133 ILE C 137 5 5 HELIX 19 19 ARG C 166 THR C 172 1 7 HELIX 20 20 THR C 173 GLU C 176 5 4 HELIX 21 21 ASP C 188 GLN C 199 1 12 SHEET 1 A 7 ASP A 8 LEU A 18 0 SHEET 2 A 7 GLY A 21 GLU A 27 -1 O ARG A 25 N ASP A 13 SHEET 3 A 7 TRP A 62 ALA A 67 -1 O PHE A 63 N ILE A 26 SHEET 4 A 7 VAL A 46 ALA A 52 -1 N VAL A 51 O GLU A 64 SHEET 5 A 7 SER A 40 CYS A 43 -1 N CYS A 43 O VAL A 46 SHEET 6 A 7 LYS A 85 ARG A 90 -1 O GLU A 89 N ALA A 42 SHEET 7 A 7 ASP A 8 LEU A 18 -1 N GLY A 10 O ILE A 86 SHEET 1 B 7 GLY A 109 GLU A 119 0 SHEET 2 B 7 ALA A 122 ARG A 128 -1 O ARG A 124 N LYS A 117 SHEET 3 B 7 GLU A 159 LEU A 164 -1 O PHE A 160 N LEU A 127 SHEET 4 B 7 THR A 148 ASN A 156 -1 N ASN A 156 O GLU A 159 SHEET 5 B 7 SER A 142 LEU A 145 -1 N VAL A 143 O LEU A 150 SHEET 6 B 7 LYS A 182 GLU A 186 -1 O GLU A 186 N ALA A 144 SHEET 7 B 7 GLY A 109 GLU A 119 -1 N ALA A 111 O VAL A 183 SHEET 1 C 7 ASP B 8 LEU B 18 0 SHEET 2 C 7 GLY B 21 GLU B 27 -1 O ARG B 25 N ASP B 13 SHEET 3 C 7 TRP B 62 ALA B 67 -1 O VAL B 65 N LEU B 24 SHEET 4 C 7 VAL B 46 ALA B 52 -1 N VAL B 51 O GLU B 64 SHEET 5 C 7 SER B 40 CYS B 43 -1 N CYS B 43 O VAL B 46 SHEET 6 C 7 LYS B 85 ARG B 90 -1 O GLU B 89 N ALA B 42 SHEET 7 C 7 ASP B 8 LEU B 18 -1 N GLY B 10 O ILE B 86 SHEET 1 D 7 THR B 148 THR B 151 0 SHEET 2 D 7 SER B 142 LEU B 145 -1 N VAL B 143 O LEU B 150 SHEET 3 D 7 LYS B 182 ILE B 187 -1 O GLU B 186 N ALA B 144 SHEET 4 D 7 GLY B 109 GLU B 119 -1 N ALA B 111 O VAL B 183 SHEET 5 D 7 ALA B 122 ARG B 128 -1 O ALA B 122 N GLU B 119 SHEET 6 D 7 GLU B 159 LEU B 164 -1 O PHE B 160 N LEU B 127 SHEET 7 D 7 GLY B 154 ASN B 156 -1 N ASN B 156 O GLU B 159 SHEET 1 E 7 ASP C 8 LEU C 18 0 SHEET 2 E 7 GLY C 21 GLU C 27 -1 O LEU C 23 N LYS C 16 SHEET 3 E 7 TRP C 62 ALA C 67 -1 O PHE C 63 N ILE C 26 SHEET 4 E 7 VAL C 46 ALA C 52 -1 N VAL C 51 O GLU C 64 SHEET 5 E 7 SER C 40 CYS C 43 -1 N CYS C 43 O VAL C 46 SHEET 6 E 7 LYS C 85 ARG C 90 -1 O GLU C 89 N ALA C 42 SHEET 7 E 7 ASP C 8 LEU C 18 -1 N GLY C 10 O ILE C 86 SHEET 1 F 7 THR C 148 THR C 151 0 SHEET 2 F 7 SER C 142 LEU C 145 -1 N VAL C 143 O LEU C 150 SHEET 3 F 7 LYS C 182 ILE C 187 -1 O GLU C 186 N ALA C 144 SHEET 4 F 7 GLY C 109 GLU C 119 -1 N ALA C 111 O VAL C 183 SHEET 5 F 7 ALA C 122 ARG C 128 -1 O ARG C 128 N GLU C 112 SHEET 6 F 7 GLU C 159 ILE C 165 -1 O PHE C 160 N LEU C 127 SHEET 7 F 7 GLY C 154 ASN C 156 -1 N ASN C 156 O GLU C 159 SITE 1 AC1 21 SER A 40 VAL A 46 CYS A 47 LEU A 48 SITE 2 AC1 21 THR A 49 GLU A 66 ALA A 67 TRP A 68 SITE 3 AC1 21 GLU A 70 ALA A 71 PHE A 104 GLY A 105 SITE 4 AC1 21 HIS A 106 VAL A 107 HOH A 434 HOH A 435 SITE 5 AC1 21 HOH A 437 GLY B 99 LYS B 140 THR B 151 SITE 6 AC1 21 ILE B 165 SITE 1 AC2 16 THR A 3 GLY A 4 ILE A 5 ILE A 6 SITE 2 AC2 16 SER A 142 THR A 148 SER A 149 LEU A 150 SITE 3 AC2 16 THR A 151 LEU A 163 LEU A 164 ILE A 165 SITE 4 AC2 16 SER A 168 VAL A 171 THR A 172 HOH A 461 SITE 1 AC3 14 SER B 40 VAL B 46 CYS B 47 THR B 49 SITE 2 AC3 14 GLU B 66 ALA B 67 TRP B 68 GLU B 70 SITE 3 AC3 14 ALA B 71 PHE B 104 GLY B 105 HIS B 106 SITE 4 AC3 14 VAL B 107 HOH B 462 SITE 1 AC4 16 SER C 40 VAL C 46 CYS C 47 LEU C 48 SITE 2 AC4 16 THR C 49 GLU C 66 ALA C 67 TRP C 68 SITE 3 AC4 16 GLU C 70 ALA C 71 PHE C 104 GLY C 105 SITE 4 AC4 16 HIS C 106 VAL C 107 HOH C 462 HOH C 466 CRYST1 68.040 92.570 102.580 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014697 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010803 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009748 0.00000