HEADER TOXIN 19-JUL-12 4G6U TITLE CDIA-CT/CDII TOXIN AND IMMUNITY COMPLEX FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: EC869 CDIA-CT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 88-377; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: EC869 CDII; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 STRAIN: O157:H7; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 9 ORGANISM_TAXID: 83334; SOURCE 10 STRAIN: O157:H7; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-AUGMENTATION, DNASE, TOXIN, IMMUNITY EXPDTA X-RAY DIFFRACTION AUTHOR R.P.MORSE,K.NIKOLAKAKIS,J.WILLET,E.GERRICK,D.A.LOW,C.S.HAYES, AUTHOR 2 C.W.GOULDING REVDAT 3 15-NOV-17 4G6U 1 REMARK REVDAT 2 09-JAN-13 4G6U 1 JRNL REVDAT 1 12-DEC-12 4G6U 0 JRNL AUTH R.P.MORSE,K.C.NIKOLAKAKIS,J.L.WILLETT,E.GERRICK,D.A.LOW, JRNL AUTH 2 C.S.HAYES,C.W.GOULDING JRNL TITL STRUCTURAL BASIS OF TOXICITY AND IMMUNITY IN JRNL TITL 2 CONTACT-DEPENDENT GROWTH INHIBITION (CDI) SYSTEMS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 21480 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23236156 JRNL DOI 10.1073/PNAS.1216238110 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9179 - 4.7040 0.98 2746 138 0.1656 0.2054 REMARK 3 2 4.7040 - 3.7346 1.00 2701 131 0.1484 0.1777 REMARK 3 3 3.7346 - 3.2628 1.00 2650 147 0.1783 0.2114 REMARK 3 4 3.2628 - 2.9645 1.00 2656 135 0.1989 0.2666 REMARK 3 5 2.9645 - 2.7521 1.00 2614 143 0.2121 0.3096 REMARK 3 6 2.7521 - 2.5899 1.00 2639 146 0.2163 0.2793 REMARK 3 7 2.5899 - 2.4602 1.00 2600 144 0.2201 0.2836 REMARK 3 8 2.4602 - 2.3531 1.00 2582 161 0.2160 0.2697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 37.15 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.83240 REMARK 3 B22 (A**2) : -3.92270 REMARK 3 B33 (A**2) : -8.90970 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2982 REMARK 3 ANGLE : 1.079 4038 REMARK 3 CHIRALITY : 0.075 454 REMARK 3 PLANARITY : 0.004 519 REMARK 3 DIHEDRAL : 13.922 1085 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 85:156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7459 60.6118 34.3988 REMARK 3 T TENSOR REMARK 3 T11: 0.4211 T22: 0.3108 REMARK 3 T33: 0.3377 T12: 0.1333 REMARK 3 T13: 0.0170 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 0.5182 L22: 7.5719 REMARK 3 L33: 0.7183 L12: -0.5243 REMARK 3 L13: -0.0286 L23: 1.7142 REMARK 3 S TENSOR REMARK 3 S11: 0.1144 S12: 0.1351 S13: 0.2250 REMARK 3 S21: -0.0622 S22: -0.0901 S23: -0.4452 REMARK 3 S31: -0.1835 S32: -0.0536 S33: -0.0407 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 157:178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1362 26.4960 45.1703 REMARK 3 T TENSOR REMARK 3 T11: 0.5871 T22: 0.3578 REMARK 3 T33: 0.3095 T12: 0.0670 REMARK 3 T13: 0.0134 T23: 0.0474 REMARK 3 L TENSOR REMARK 3 L11: 2.1644 L22: 6.1434 REMARK 3 L33: 3.8090 L12: 2.3342 REMARK 3 L13: -4.5444 L23: 2.2420 REMARK 3 S TENSOR REMARK 3 S11: -0.4287 S12: -0.8545 S13: -0.7639 REMARK 3 S21: 0.7611 S22: -0.0144 S23: -0.3669 REMARK 3 S31: 0.5411 S32: -0.2641 S33: 0.3385 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 179:292 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0533 39.2461 44.4927 REMARK 3 T TENSOR REMARK 3 T11: 0.4101 T22: 0.2198 REMARK 3 T33: 0.2539 T12: 0.0901 REMARK 3 T13: -0.0439 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 6.5045 L22: 1.0636 REMARK 3 L33: 1.5324 L12: -1.2932 REMARK 3 L13: 1.0194 L23: -0.1430 REMARK 3 S TENSOR REMARK 3 S11: -0.3686 S12: -0.3755 S13: 0.5691 REMARK 3 S21: 0.3697 S22: 0.1724 S23: -0.0258 REMARK 3 S31: -0.1706 S32: -0.1711 S33: 0.1791 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 2:76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4646 28.7730 47.5164 REMARK 3 T TENSOR REMARK 3 T11: 0.2382 T22: 0.1689 REMARK 3 T33: 0.2296 T12: 0.0186 REMARK 3 T13: 0.0182 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 6.5505 L22: 3.2115 REMARK 3 L33: 7.7697 L12: 0.7139 REMARK 3 L13: 3.8494 L23: 1.3541 REMARK 3 S TENSOR REMARK 3 S11: 0.0415 S12: 0.0676 S13: -0.0215 REMARK 3 S21: 0.1411 S22: -0.1482 S23: -0.2044 REMARK 3 S31: -0.0183 S32: 0.4754 S33: 0.0796 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND ( RESID 77:106 OR RESID 107:107 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7351 21.2679 62.4319 REMARK 3 T TENSOR REMARK 3 T11: 0.7167 T22: 0.8177 REMARK 3 T33: 0.3114 T12: -0.2147 REMARK 3 T13: 0.0152 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 5.7419 L22: 0.8352 REMARK 3 L33: 4.5773 L12: -1.2497 REMARK 3 L13: 5.0308 L23: -1.5634 REMARK 3 S TENSOR REMARK 3 S11: -0.1938 S12: 0.4847 S13: -0.5392 REMARK 3 S21: -0.7011 S22: 0.6023 S23: -0.0971 REMARK 3 S31: 0.7530 S32: -0.8375 S33: -0.2763 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 108:138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2516 38.5613 53.5840 REMARK 3 T TENSOR REMARK 3 T11: 0.3919 T22: 0.3421 REMARK 3 T33: 0.2630 T12: 0.0569 REMARK 3 T13: -0.1339 T23: -0.0392 REMARK 3 L TENSOR REMARK 3 L11: 7.6940 L22: 5.2707 REMARK 3 L33: 5.4675 L12: 0.1389 REMARK 3 L13: -0.8660 L23: 1.1860 REMARK 3 S TENSOR REMARK 3 S11: -0.0456 S12: -0.6449 S13: 0.5532 REMARK 3 S21: 0.2354 S22: -0.0328 S23: -0.0334 REMARK 3 S31: -0.9516 S32: -0.3735 S33: 0.1077 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 139:164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0684 43.6325 52.9701 REMARK 3 T TENSOR REMARK 3 T11: 0.7035 T22: 0.3633 REMARK 3 T33: 0.5186 T12: -0.1860 REMARK 3 T13: -0.1322 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 8.4671 L22: 6.3441 REMARK 3 L33: 7.6772 L12: -5.7990 REMARK 3 L13: -0.6331 L23: 0.5863 REMARK 3 S TENSOR REMARK 3 S11: 0.0616 S12: -0.2938 S13: 1.1431 REMARK 3 S21: -0.5157 S22: -0.0399 S23: -0.1102 REMARK 3 S31: -1.2458 S32: 0.5517 S33: -0.0259 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22419 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 39.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 5.5, 0.2 M REMARK 280 NACL. 18% PEG-6000, 10 MM YTTRIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.58650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.58650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.84950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.81550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.84950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.81550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.58650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.84950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.81550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.58650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.84950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.81550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 6 REMARK 465 GLY A 7 REMARK 465 THR A 8 REMARK 465 ASN A 9 REMARK 465 GLN A 10 REMARK 465 SER A 11 REMARK 465 LEU A 12 REMARK 465 THR A 13 REMARK 465 PHE A 14 REMARK 465 ASP A 15 REMARK 465 LYS A 16 REMARK 465 GLU A 17 REMARK 465 LEU A 18 REMARK 465 SER A 19 REMARK 465 ASP A 20 REMARK 465 CYS A 21 REMARK 465 ARG A 22 REMARK 465 LYS A 23 REMARK 465 SER A 24 REMARK 465 GLY A 25 REMARK 465 GLY A 26 REMARK 465 ASN A 27 REMARK 465 CYS A 28 REMARK 465 GLN A 29 REMARK 465 ASP A 30 REMARK 465 ILE A 31 REMARK 465 ILE A 32 REMARK 465 ASP A 33 REMARK 465 LYS A 34 REMARK 465 TRP A 35 REMARK 465 GLU A 36 REMARK 465 LYS A 37 REMARK 465 ILE A 38 REMARK 465 SER A 39 REMARK 465 ASP A 40 REMARK 465 GLU A 41 REMARK 465 GLN A 42 REMARK 465 SER A 43 REMARK 465 ALA A 44 REMARK 465 GLU A 45 REMARK 465 ILE A 46 REMARK 465 ASP A 47 REMARK 465 GLN A 48 REMARK 465 LYS A 49 REMARK 465 LEU A 50 REMARK 465 LYS A 51 REMARK 465 ASP A 52 REMARK 465 ASN A 53 REMARK 465 PRO A 54 REMARK 465 LEU A 55 REMARK 465 GLU A 56 REMARK 465 ALA A 57 REMARK 465 GLN A 58 REMARK 465 VAL A 59 REMARK 465 ILE A 60 REMARK 465 ASP A 61 REMARK 465 LYS A 62 REMARK 465 GLU A 63 REMARK 465 VAL A 64 REMARK 465 ALA A 65 REMARK 465 LYS A 66 REMARK 465 GLY A 67 REMARK 465 GLY A 68 REMARK 465 TYR A 69 REMARK 465 ASP A 70 REMARK 465 MSE A 71 REMARK 465 THR A 72 REMARK 465 GLN A 73 REMARK 465 ARG A 74 REMARK 465 PRO A 75 REMARK 465 GLY A 76 REMARK 465 TRP A 77 REMARK 465 LEU A 78 REMARK 465 GLY A 79 REMARK 465 ASN A 80 REMARK 465 ILE A 81 REMARK 465 GLY A 82 REMARK 465 VAL A 83 REMARK 465 GLU A 84 REMARK 465 MSE B 1 REMARK 465 CYS B 165 REMARK 465 LYS B 166 REMARK 465 GLY B 167 REMARK 465 THR B 168 REMARK 465 SER B 169 REMARK 465 LEU B 170 REMARK 465 GLU B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 465 HIS B 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 GLU B 82 CG CD OE1 OE2 REMARK 470 GLN B 83 CG CD OE1 NE2 REMARK 470 GLU B 93 CG CD OE1 OE2 REMARK 470 ARG B 136 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 124 5.10 -67.17 REMARK 500 GLN A 172 -79.79 -115.70 REMARK 500 ILE A 196 -59.81 71.49 REMARK 500 ASN B 116 -124.03 58.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 418 O REMARK 620 2 HOH A 434 O 53.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 B 204 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 66 OD2 REMARK 620 2 HOH B 315 O 88.0 REMARK 620 3 ACT B 203 OXT 144.1 67.2 REMARK 620 4 GLU B 70 OE1 120.0 147.3 80.1 REMARK 620 5 ACT B 203 O 162.9 86.5 45.8 70.9 REMARK 620 6 HOH B 316 O 70.8 85.9 81.4 88.0 124.9 REMARK 620 7 GLU B 70 OE2 73.2 150.0 116.1 47.2 117.8 66.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 B 205 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 61 OD1 REMARK 620 2 HOH B 312 O 77.6 REMARK 620 3 ACT B 201 O 113.8 148.5 REMARK 620 4 HOH B 327 O 82.8 78.3 130.7 REMARK 620 5 ASP B 61 OD2 47.8 123.5 78.8 81.3 REMARK 620 6 ACT B 201 OXT 127.7 149.4 44.8 87.5 80.0 REMARK 620 7 HOH B 322 O 152.0 83.8 92.9 73.0 137.6 66.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 B 206 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 153 OE2 REMARK 620 2 GLU B 153 OE1 42.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YT3 B 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G6V RELATED DB: PDB DBREF 4G6U A 8 297 UNP F2WK69 F2WK69_ECO57 88 377 DBREF 4G6U B 1 167 UNP F2WK70 F2WK70_ECO57 1 167 SEQADV 4G6U MSE A 6 UNP F2WK69 EXPRESSION TAG SEQADV 4G6U GLY A 7 UNP F2WK69 EXPRESSION TAG SEQADV 4G6U ILE A 161 UNP F2WK69 VAL 1022 ENGINEERED MUTATION SEQADV 4G6U THR B 168 UNP F2WK70 EXPRESSION TAG SEQADV 4G6U SER B 169 UNP F2WK70 EXPRESSION TAG SEQADV 4G6U LEU B 170 UNP F2WK70 EXPRESSION TAG SEQADV 4G6U GLU B 171 UNP F2WK70 EXPRESSION TAG SEQADV 4G6U HIS B 172 UNP F2WK70 EXPRESSION TAG SEQADV 4G6U HIS B 173 UNP F2WK70 EXPRESSION TAG SEQADV 4G6U HIS B 174 UNP F2WK70 EXPRESSION TAG SEQADV 4G6U HIS B 175 UNP F2WK70 EXPRESSION TAG SEQADV 4G6U HIS B 176 UNP F2WK70 EXPRESSION TAG SEQADV 4G6U HIS B 177 UNP F2WK70 EXPRESSION TAG SEQRES 1 A 292 MSE GLY THR ASN GLN SER LEU THR PHE ASP LYS GLU LEU SEQRES 2 A 292 SER ASP CYS ARG LYS SER GLY GLY ASN CYS GLN ASP ILE SEQRES 3 A 292 ILE ASP LYS TRP GLU LYS ILE SER ASP GLU GLN SER ALA SEQRES 4 A 292 GLU ILE ASP GLN LYS LEU LYS ASP ASN PRO LEU GLU ALA SEQRES 5 A 292 GLN VAL ILE ASP LYS GLU VAL ALA LYS GLY GLY TYR ASP SEQRES 6 A 292 MSE THR GLN ARG PRO GLY TRP LEU GLY ASN ILE GLY VAL SEQRES 7 A 292 GLU VAL MSE THR SER ASP GLU ALA LYS ALA TYR VAL GLN SEQRES 8 A 292 LYS TRP ASN GLY ARG ASP LEU THR LYS ILE ASP VAL ASN SEQRES 9 A 292 SER PRO GLU TRP THR LYS PHE ALA VAL PHE ALA SER ASP SEQRES 10 A 292 PRO GLU ASN GLN ALA MSE LEU VAL SER GLY GLY LEU LEU SEQRES 11 A 292 VAL LYS ASP ILE THR LYS ALA ALA ILE SER PHE MSE SER SEQRES 12 A 292 ARG ASN THR ALA THR ALA THR VAL ASN ALA SER GLU ILE SEQRES 13 A 292 GLY MSE GLN TRP GLY GLN GLY ASN MSE LYS GLN GLY MSE SEQRES 14 A 292 PRO TRP GLU ASP TYR VAL GLY LYS SER LEU PRO ALA ASP SEQRES 15 A 292 ALA ARG LEU PRO LYS ASN PHE LYS ILE PHE ASP TYR TYR SEQRES 16 A 292 ASP GLY ALA THR LYS THR ALA THR SER VAL LYS SER ILE SEQRES 17 A 292 ASP THR GLN THR MSE ALA LYS LEU ALA ASN PRO ASN GLN SEQRES 18 A 292 VAL TYR SER SER ILE LYS GLY ASN ILE ASP ALA ALA ALA SEQRES 19 A 292 LYS PHE LYS GLU TYR ALA LEU SER GLY ARG GLU LEU THR SEQRES 20 A 292 SER SER MSE ILE SER ASN ARG GLU ILE GLN LEU ALA ILE SEQRES 21 A 292 PRO ALA ASP THR THR LYS THR GLN TRP ALA GLU ILE ASN SEQRES 22 A 292 ARG ALA ILE GLU TYR GLY LYS SER GLN GLY VAL LYS VAL SEQRES 23 A 292 THR VAL THR GLN VAL LYS SEQRES 1 B 177 MSE ALA PHE ASN LYS ASP GLN ASP TYR TRP ALA ASN ILE SEQRES 2 B 177 PHE VAL THR PRO ASP PHE LEU SER VAL GLU THR TYR SER SEQRES 3 B 177 GLY LEU GLY MSE THR GLY ARG ASP PRO LEU PHE SER PRO SEQRES 4 B 177 ARG LEU LEU GLN PRO ASP VAL ASP ASP LYS SER LEU GLY SEQRES 5 B 177 GLU GLU ILE LEU GLN ALA LEU SER ASP SER ARG THR LEU SEQRES 6 B 177 ASP VAL LEU GLU GLU ARG VAL ALA PHE PHE ASP LEU GLU SEQRES 7 B 177 LYS SER LYS GLU GLN TYR ALA ALA TRP ILE ALA THR LEU SEQRES 8 B 177 MSE GLU LYS TYR GLY TYR ARG THR LYS ARG ALA LEU PHE SEQRES 9 B 177 LYS ASN MSE LYS LYS VAL GLY ILE HIS LEU VAL ASN ASP SEQRES 10 B 177 VAL ILE THR ILE ARG PRO SER PHE HIS GLU LYS LEU GLU SEQRES 11 B 177 ALA TRP SER GLY ASN ARG ILE ASN GLU SER ASP TYR VAL SEQRES 12 B 177 VAL LEU PRO ALA ASP SER SER PRO THR GLU ILE GLY SER SEQRES 13 B 177 GLY LEU ARG LEU ALA LEU SER ARG CYS LYS GLY THR SER SEQRES 14 B 177 LEU GLU HIS HIS HIS HIS HIS HIS MODRES 4G6U MSE A 86 MET SELENOMETHIONINE MODRES 4G6U MSE A 128 MET SELENOMETHIONINE MODRES 4G6U MSE A 147 MET SELENOMETHIONINE MODRES 4G6U MSE A 163 MET SELENOMETHIONINE MODRES 4G6U MSE A 170 MET SELENOMETHIONINE MODRES 4G6U MSE A 174 MET SELENOMETHIONINE MODRES 4G6U MSE A 218 MET SELENOMETHIONINE MODRES 4G6U MSE A 255 MET SELENOMETHIONINE MODRES 4G6U MSE B 30 MET SELENOMETHIONINE MODRES 4G6U MSE B 92 MET SELENOMETHIONINE MODRES 4G6U MSE B 107 MET SELENOMETHIONINE HET MSE A 86 8 HET MSE A 128 8 HET MSE A 147 8 HET MSE A 163 8 HET MSE A 170 8 HET MSE A 174 8 HET MSE A 218 8 HET MSE A 255 8 HET MSE B 30 8 HET MSE B 92 8 HET MSE B 107 8 HET ZN A 301 1 HET CL A 302 1 HET ACT B 201 4 HET ACT B 202 4 HET ACT B 203 4 HET YT3 B 204 1 HET YT3 B 205 1 HET YT3 B 206 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM YT3 YTTRIUM (III) ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 ZN ZN 2+ FORMUL 4 CL CL 1- FORMUL 5 ACT 3(C2 H3 O2 1-) FORMUL 8 YT3 3(Y 3+) FORMUL 11 HOH *77(H2 O) HELIX 1 1 THR A 87 ASN A 99 1 13 HELIX 2 2 ASP A 102 ILE A 106 5 5 HELIX 3 3 SER A 110 ASP A 122 1 13 HELIX 4 4 ASN A 125 GLY A 132 1 8 HELIX 5 5 LYS A 137 SER A 148 1 12 HELIX 6 6 SER A 159 ILE A 161 5 3 HELIX 7 7 GLY A 168 LYS A 171 5 4 HELIX 8 8 GLN A 172 LEU A 184 1 13 HELIX 9 9 THR A 217 ASN A 223 1 7 HELIX 10 10 ASN A 225 PHE A 241 1 17 HELIX 11 11 SER A 254 ILE A 256 5 3 HELIX 12 12 THR A 270 GLN A 287 1 18 HELIX 13 13 ASP B 47 ASP B 61 1 15 HELIX 14 14 VAL B 67 ASP B 76 1 10 HELIX 15 15 SER B 80 GLY B 96 1 17 HELIX 16 16 THR B 99 LYS B 105 1 7 HELIX 17 17 ASN B 138 TYR B 142 5 5 HELIX 18 18 SER B 150 SER B 163 1 14 SHEET 1 A 5 ALA A 154 ASN A 157 0 SHEET 2 A 5 VAL A 289 LYS A 297 1 O GLN A 295 N ALA A 154 SHEET 3 A 5 ASN A 258 PRO A 266 1 N ILE A 261 O LYS A 290 SHEET 4 A 5 THR A 206 SER A 212 1 N SER A 209 O GLU A 260 SHEET 5 A 5 TYR A 199 ASP A 201 -1 N TYR A 199 O THR A 208 SHEET 1 B 7 ARG B 40 LEU B 42 0 SHEET 2 B 7 LEU B 20 GLY B 27 -1 N VAL B 22 O ARG B 40 SHEET 3 B 7 THR B 31 ARG B 33 -1 O GLY B 32 N SER B 26 SHEET 4 B 7 ARG A 249 THR A 252 -1 N GLU A 250 O THR B 31 SHEET 5 B 7 GLU A 243 LEU A 246 -1 N LEU A 246 O ARG A 249 SHEET 6 B 7 ALA B 131 SER B 133 -1 O TRP B 132 N ALA A 245 SHEET 7 B 7 PHE B 125 LYS B 128 -1 N PHE B 125 O SER B 133 SHEET 1 C 6 ARG B 40 LEU B 42 0 SHEET 2 C 6 LEU B 20 GLY B 27 -1 N VAL B 22 O ARG B 40 SHEET 3 C 6 TYR B 9 VAL B 15 -1 N PHE B 14 O SER B 21 SHEET 4 C 6 LYS B 108 VAL B 115 -1 O ILE B 112 N ALA B 11 SHEET 5 C 6 VAL B 118 PRO B 123 -1 O ARG B 122 N GLY B 111 SHEET 6 C 6 VAL B 143 PRO B 146 -1 O VAL B 143 N ILE B 121 LINK C VAL A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N THR A 87 1555 1555 1.33 LINK C ALA A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N LEU A 129 1555 1555 1.33 LINK C PHE A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N SER A 148 1555 1555 1.33 LINK C GLY A 162 N MSE A 163 1555 1555 1.33 LINK C MSE A 163 N GLN A 164 1555 1555 1.33 LINK C ASN A 169 N MSE A 170 1555 1555 1.32 LINK C MSE A 170 N LYS A 171 1555 1555 1.33 LINK C GLY A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N PRO A 175 1555 1555 1.35 LINK C THR A 217 N MSE A 218 1555 1555 1.33 LINK C MSE A 218 N ALA A 219 1555 1555 1.33 LINK C SER A 254 N MSE A 255 1555 1555 1.33 LINK C MSE A 255 N ILE A 256 1555 1555 1.33 LINK C GLY B 29 N MSE B 30 1555 1555 1.33 LINK C MSE B 30 N THR B 31 1555 1555 1.33 LINK C LEU B 91 N MSE B 92 1555 1555 1.33 LINK C ASN B 106 N MSE B 107 1555 1555 1.33 LINK C MSE B 107 N LYS B 108 1555 1555 1.33 LINK ZN ZN A 301 O HOH A 418 1555 1555 2.31 LINK OD2 ASP B 66 Y YT3 B 204 1555 1555 2.61 LINK Y YT3 B 204 O HOH B 315 1555 1555 2.64 LINK ZN ZN A 301 O HOH A 434 1555 1555 2.65 LINK OD1 ASP B 61 Y YT3 B 205 1555 1555 2.66 LINK Y YT3 B 205 O HOH B 312 1555 1555 2.69 LINK OXT ACT B 203 Y YT3 B 204 1555 1555 2.70 LINK OE1 GLU B 70 Y YT3 B 204 1555 1555 2.71 LINK OE2 GLU B 153 Y YT3 B 206 1555 1555 2.74 LINK O ACT B 203 Y YT3 B 204 1555 1555 2.77 LINK O ACT B 201 Y YT3 B 205 1555 1555 2.78 LINK Y YT3 B 205 O HOH B 327 1555 1555 2.78 LINK Y YT3 B 204 O HOH B 316 1555 1555 2.79 LINK OE2 GLU B 70 Y YT3 B 204 1555 1555 2.81 LINK OD2 ASP B 61 Y YT3 B 205 1555 1555 2.81 LINK OXT ACT B 201 Y YT3 B 205 1555 1555 2.81 LINK Y YT3 B 205 O HOH B 322 1555 1555 2.82 LINK OE1 GLU B 153 Y YT3 B 206 1555 1555 3.21 LINK C MSE B 92 N GLU B 93 1555 1555 1.33 SITE 1 AC1 4 GLU A 177 ASP A 198 HOH A 418 HOH A 434 SITE 1 AC2 4 LYS A 195 LYS A 242 GLU A 243 GLY B 134 SITE 1 AC3 8 ASP A 89 ARG B 40 GLN B 57 ASP B 61 SITE 2 AC3 8 YT3 B 205 HOH B 318 HOH B 322 HOH B 328 SITE 1 AC4 3 GLU B 23 TRP B 87 HOH B 317 SITE 1 AC5 9 VAL A 95 GLN A 96 ASN A 99 LYS A 137 SITE 2 AC5 9 GLU A 160 GLU B 70 YT3 B 204 HOH B 315 SITE 3 AC5 9 HOH B 319 SITE 1 AC6 6 GLU A 160 ASP B 66 GLU B 70 ACT B 203 SITE 2 AC6 6 HOH B 315 HOH B 316 SITE 1 AC7 6 ASP A 89 ASP B 61 ACT B 201 HOH B 312 SITE 2 AC7 6 HOH B 322 HOH B 327 SITE 1 AC8 1 GLU B 153 CRYST1 81.699 103.631 125.173 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012240 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007989 0.00000