HEADER LIGASE 19-JUL-12 4G6Z TITLE CRYSTAL STRUCTURE OF A GLUTAMYL-TRNA SYNTHETASE GLURS FROM TITLE 2 BURKHOLDERIA THAILANDENSIS BOUND TO L-GLUTAMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE-TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLUTAMYL-TRNA SYNTHETASE, GLURS; COMPND 5 EC: 6.1.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264 / ATCC 700388 / DSM 13276 / CIP 106301; SOURCE 5 GENE: BTH_I1984, GLTX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAVA01421 KEYWDS AMINOACYL-TRNA SYNTHETASE, AARS, CLASS 1B AARS, ATP-DEPENDENT, TRNA KEYWDS 2 CHARGING, PROTEIN SYNTHESIS, LIGASE, STRUCTURAL GENOMICS, SEATTLE KEYWDS 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 06-DEC-23 4G6Z 1 REMARK REVDAT 4 13-SEP-23 4G6Z 1 REMARK SEQADV LINK REVDAT 3 29-MAR-17 4G6Z 1 JRNL REVDAT 2 30-OCT-13 4G6Z 1 JRNL REVDAT 1 01-AUG-12 4G6Z 0 JRNL AUTH S.O.MOEN,T.E.EDWARDS,D.M.DRANOW,M.C.CLIFTON,B.SANKARAN, JRNL AUTH 2 W.C.VAN VOORHIS,A.SHARMA,C.MANOIL,B.L.STAKER,P.J.MYLER, JRNL AUTH 3 D.D.LORIMER JRNL TITL LIGAND CO-CRYSTALLIZATION OF AMINOACYL-TRNA SYNTHETASES FROM JRNL TITL 2 INFECTIOUS DISEASE ORGANISMS. JRNL REF SCI REP V. 7 223 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28303005 JRNL DOI 10.1038/S41598-017-00367-6 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1725 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2316 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2942 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.820 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3049 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2843 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4154 ; 1.427 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6514 ; 0.817 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 383 ; 5.572 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;34.148 ;23.451 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 469 ;12.963 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.998 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 450 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3493 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 709 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 466 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8092 37.3375 37.2925 REMARK 3 T TENSOR REMARK 3 T11: 0.0762 T22: 0.0331 REMARK 3 T33: 0.0076 T12: 0.0046 REMARK 3 T13: -0.0016 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.2041 L22: 0.3899 REMARK 3 L33: 1.1838 L12: -0.1862 REMARK 3 L13: 0.0694 L23: 0.4308 REMARK 3 S TENSOR REMARK 3 S11: -0.0556 S12: -0.0586 S13: -0.0038 REMARK 3 S21: 0.0918 S22: 0.0720 S23: -0.0048 REMARK 3 S31: 0.1243 S32: 0.0027 S33: -0.0164 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES WITH TLS ADDED. HYDROGENS HAVE REMARK 3 BEEN ADDED IN THE RIDING POSITIONS. REMARK 4 REMARK 4 4G6Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977408 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34013 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2CFO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUTHA.01187.A.A1 PS01190 AT 25 MG/ML REMARK 280 AGAINST MORPHEUS SCREEN CONDITION H4, 0.1 M MES/IMMIDAZOLE, 12.5% REMARK 280 PEG 1000, 12.5% PEG 3350, 12.5% MPD, 0.02 M L-GLUTAMATE, REMARK 280 ALANINE, LYSINE, SERINE, GLYCINE, CRYSTAL TRACKING ID 233960H4, REMARK 280 UNIQUE PUCK ID XGV5-8, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.13500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.47500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.47500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.06750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.47500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.47500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 99.20250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.47500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.47500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.06750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.47500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.47500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 99.20250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.13500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 504 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 103 REMARK 465 THR A 104 REMARK 465 GLU A 105 REMARK 465 GLU A 106 REMARK 465 LEU A 107 REMARK 465 ASP A 108 REMARK 465 ALA A 109 REMARK 465 LEU A 110 REMARK 465 ARG A 111 REMARK 465 GLU A 112 REMARK 465 ARG A 113 REMARK 465 GLN A 114 REMARK 465 ARG A 115 REMARK 465 ALA A 116 REMARK 465 ALA A 117 REMARK 465 GLY A 118 REMARK 465 GLU A 119 REMARK 465 LYS A 120 REMARK 465 PRO A 121 REMARK 465 PRO A 379 REMARK 465 GLY A 380 REMARK 465 ALA A 381 REMARK 465 ASP A 382 REMARK 465 ALA A 383 REMARK 465 LEU A 384 REMARK 465 ALA A 385 REMARK 465 GLN A 386 REMARK 465 HIS A 387 REMARK 465 VAL A 388 REMARK 465 THR A 389 REMARK 465 ASP A 390 REMARK 465 ALA A 391 REMARK 465 VAL A 392 REMARK 465 ARG A 393 REMARK 465 PRO A 394 REMARK 465 ALA A 395 REMARK 465 LEU A 396 REMARK 465 VAL A 397 REMARK 465 GLU A 398 REMARK 465 PHE A 399 REMARK 465 ALA A 400 REMARK 465 ALA A 401 REMARK 465 ALA A 402 REMARK 465 LEU A 403 REMARK 465 LYS A 404 REMARK 465 THR A 405 REMARK 465 VAL A 406 REMARK 465 GLU A 407 REMARK 465 TRP A 408 REMARK 465 THR A 409 REMARK 465 LYS A 410 REMARK 465 GLU A 411 REMARK 465 ALA A 412 REMARK 465 ILE A 413 REMARK 465 ALA A 414 REMARK 465 ALA A 415 REMARK 465 ALA A 416 REMARK 465 LEU A 417 REMARK 465 LYS A 418 REMARK 465 ALA A 419 REMARK 465 VAL A 420 REMARK 465 LEU A 421 REMARK 465 GLY A 422 REMARK 465 ALA A 423 REMARK 465 HIS A 424 REMARK 465 LYS A 425 REMARK 465 LEU A 426 REMARK 465 LYS A 427 REMARK 465 MET A 428 REMARK 465 PRO A 429 REMARK 465 GLN A 430 REMARK 465 LEU A 431 REMARK 465 ALA A 432 REMARK 465 MET A 433 REMARK 465 PRO A 434 REMARK 465 VAL A 435 REMARK 465 ARG A 436 REMARK 465 LEU A 437 REMARK 465 LEU A 438 REMARK 465 VAL A 439 REMARK 465 ALA A 440 REMARK 465 GLY A 441 REMARK 465 THR A 442 REMARK 465 THR A 443 REMARK 465 ALA A 467 REMARK 465 LEU A 468 REMARK 465 ALA A 469 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 GLU A 137 CG CD OE1 OE2 REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 344 CG CD OE1 OE2 REMARK 470 GLN A 345 CG CD OE1 NE2 REMARK 470 ARG A 359 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 444 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 448 CG1 CG2 CD1 REMARK 470 ARG A 457 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 458 CG OD1 OD2 REMARK 470 VAL A 461 CG1 CG2 REMARK 470 ILE A 464 CG1 CG2 CD1 REMARK 470 GLU A 465 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 242 O HOH A 752 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 42 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 128 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 221 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 176 129.02 -35.13 REMARK 500 PRO A 347 152.88 -45.59 REMARK 500 SER A 447 120.56 -37.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 343 O REMARK 620 2 GLU A 344 O 72.9 REMARK 620 3 GLY A 346 O 74.9 83.9 REMARK 620 4 HOH A 787 O 71.8 126.2 123.0 REMARK 620 5 HOH A 788 O 162.0 109.0 123.0 94.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUTHA.01187.A RELATED DB: TARGETTRACK DBREF 4G6Z A 1 469 UNP Q2SX36 SYE_BURTA 1 469 SEQADV 4G6Z MET A -20 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z ALA A -19 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z HIS A -18 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z HIS A -17 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z HIS A -16 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z HIS A -15 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z HIS A -14 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z HIS A -13 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z MET A -12 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z GLY A -11 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z THR A -10 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z LEU A -9 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z GLU A -8 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z ALA A -7 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z GLN A -6 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z THR A -5 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z GLN A -4 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z GLY A -3 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z PRO A -2 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z GLY A -1 UNP Q2SX36 EXPRESSION TAG SEQADV 4G6Z SER A 0 UNP Q2SX36 EXPRESSION TAG SEQRES 1 A 490 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 490 ALA GLN THR GLN GLY PRO GLY SER MET THR ARG PRO VAL SEQRES 3 A 490 ARG THR ARG PHE ALA PRO SER PRO THR GLY PHE ILE HIS SEQRES 4 A 490 LEU GLY ASN ILE ARG SER ALA LEU TYR PRO TRP ALA PHE SEQRES 5 A 490 ALA ARG LYS MET LYS GLY THR PHE VAL LEU ARG ILE GLU SEQRES 6 A 490 ASP THR ASP VAL GLU ARG SER SER GLN GLU ALA VAL ASP SEQRES 7 A 490 ALA ILE LEU GLU GLY MET ALA TRP LEU GLY LEU ASP TYR SEQRES 8 A 490 ASP GLU GLY PRO TYR TYR GLN MET GLN ARG MET ASP ARG SEQRES 9 A 490 TYR ARG GLU VAL LEU ALA GLN MET GLN GLU LYS GLY LEU SEQRES 10 A 490 VAL TYR PRO OCS TYR MET SER THR GLU GLU LEU ASP ALA SEQRES 11 A 490 LEU ARG GLU ARG GLN ARG ALA ALA GLY GLU LYS PRO ARG SEQRES 12 A 490 TYR ASP GLY THR TRP ARG PRO GLU PRO GLY LYS VAL LEU SEQRES 13 A 490 PRO GLU PRO PRO ALA GLY VAL ALA PRO VAL LEU ARG PHE SEQRES 14 A 490 ARG ASN PRO LEU THR GLY THR VAL ALA TRP ASP ASP ALA SEQRES 15 A 490 VAL LYS GLY ARG VAL GLU ILE SER ASN GLU GLU LEU ASP SEQRES 16 A 490 ASP LEU VAL VAL ALA ARG PRO ASP GLY THR PRO MET TYR SEQRES 17 A 490 ASN PHE CYS VAL VAL VAL ASP ASP LEU ASP MET GLY ILE SEQRES 18 A 490 THR HIS VAL ILE ARG GLY ASP ASP HIS VAL ASN ASN THR SEQRES 19 A 490 PRO ARG GLN ILE ASN ILE LEU ARG ALA LEU GLY GLY GLU SEQRES 20 A 490 VAL PRO VAL TYR ALA HIS LEU PRO THR VAL LEU ASN GLU SEQRES 21 A 490 GLN GLY GLU LYS MET SER LYS ARG HIS GLY ALA MET SER SEQRES 22 A 490 VAL MET GLY TYR ARG ASP ALA GLY TYR LEU PRO GLU ALA SEQRES 23 A 490 VAL LEU ASN TYR LEU ALA ARG LEU GLY TRP SER HIS GLY SEQRES 24 A 490 ASP ALA GLU ILE PHE THR ARG GLU GLN PHE VAL GLU TRP SEQRES 25 A 490 PHE ASP LEU GLU HIS LEU GLY LYS SER PRO ALA GLN TYR SEQRES 26 A 490 ASP HIS ASN LYS LEU ASN TRP LEU ASN ASN HIS TYR ILE SEQRES 27 A 490 LYS GLU ALA ASP ASP ALA ARG LEU ALA GLY LEU ALA LYS SEQRES 28 A 490 PRO PHE PHE ALA ALA LEU GLY ILE ASP ALA GLY ALA ILE SEQRES 29 A 490 GLU GLN GLY PRO ASP LEU VAL SER VAL MET GLY LEU MET SEQRES 30 A 490 LYS ASP ARG ALA SER THR VAL LYS GLU ILE ALA GLU ASN SEQRES 31 A 490 SER ALA MET PHE TYR ARG ALA PRO ALA PRO GLY ALA ASP SEQRES 32 A 490 ALA LEU ALA GLN HIS VAL THR ASP ALA VAL ARG PRO ALA SEQRES 33 A 490 LEU VAL GLU PHE ALA ALA ALA LEU LYS THR VAL GLU TRP SEQRES 34 A 490 THR LYS GLU ALA ILE ALA ALA ALA LEU LYS ALA VAL LEU SEQRES 35 A 490 GLY ALA HIS LYS LEU LYS MET PRO GLN LEU ALA MET PRO SEQRES 36 A 490 VAL ARG LEU LEU VAL ALA GLY THR THR HIS THR PRO SER SEQRES 37 A 490 ILE ASP ALA VAL LEU LEU LEU PHE GLY ARG ASP VAL VAL SEQRES 38 A 490 VAL SER ARG ILE GLU ALA ALA LEU ALA MODRES 4G6Z OCS A 100 CYS CYSTEINESULFONIC ACID HET OCS A 100 9 HET GLU A 501 10 HET MPD A 502 8 HET NA A 503 1 HET CL A 504 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM GLU GLUTAMIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 1 OCS C3 H7 N O5 S FORMUL 2 GLU C5 H9 N O4 FORMUL 3 MPD C6 H14 O2 FORMUL 4 NA NA 1+ FORMUL 5 CL CL 1- FORMUL 6 HOH *200(H2 O) HELIX 1 1 HIS A 18 MET A 35 1 18 HELIX 2 2 ASP A 47 SER A 51 5 5 HELIX 3 3 SER A 52 LEU A 66 1 15 HELIX 4 4 ARG A 80 LYS A 94 1 15 HELIX 5 5 GLU A 171 LEU A 173 5 3 HELIX 6 6 MET A 186 MET A 198 1 13 HELIX 7 7 ASP A 208 ASN A 211 5 4 HELIX 8 8 ASN A 212 LEU A 223 1 12 HELIX 9 9 SER A 252 ALA A 259 1 8 HELIX 10 10 LEU A 262 ARG A 272 1 11 HELIX 11 11 THR A 284 PHE A 292 1 9 HELIX 12 12 ASP A 293 LEU A 297 5 5 HELIX 13 13 ASP A 305 ALA A 320 1 16 HELIX 14 14 ASP A 321 ALA A 335 1 15 HELIX 15 15 ASP A 339 GLY A 346 1 8 HELIX 16 16 ASP A 348 LYS A 357 1 10 HELIX 17 17 THR A 362 ALA A 371 1 10 HELIX 18 18 MET A 372 TYR A 374 5 3 HELIX 19 19 SER A 447 PHE A 455 1 9 HELIX 20 20 GLY A 456 ALA A 466 1 11 SHEET 1 A 3 ARG A 6 PHE A 9 0 SHEET 2 A 3 THR A 38 ILE A 43 1 O THR A 38 N THR A 7 SHEET 3 A 3 GLU A 72 TYR A 76 1 O TYR A 75 N ILE A 43 SHEET 1 B 3 VAL A 97 OCS A 100 0 SHEET 2 B 3 VAL A 145 PHE A 148 -1 O VAL A 145 N OCS A 100 SHEET 3 B 3 VAL A 177 ALA A 179 -1 O VAL A 178 N LEU A 146 SHEET 1 C 2 THR A 155 ASP A 160 0 SHEET 2 C 2 GLY A 164 SER A 169 -1 O VAL A 166 N TRP A 158 SHEET 1 D 2 HIS A 202 GLY A 206 0 SHEET 2 D 2 VAL A 229 LEU A 233 1 O VAL A 229 N VAL A 203 SHEET 1 E 2 VAL A 236 LEU A 237 0 SHEET 2 E 2 ALA A 302 GLN A 303 1 O ALA A 302 N LEU A 237 LINK C PRO A 99 N OCS A 100 1555 1555 1.32 LINK C OCS A 100 N TYR A 101 1555 1555 1.34 LINK O ILE A 343 NA NA A 503 1555 1555 3.01 LINK O GLU A 344 NA NA A 503 1555 1555 2.72 LINK O GLY A 346 NA NA A 503 1555 1555 2.67 LINK NA NA A 503 O HOH A 787 1555 1555 2.49 LINK NA NA A 503 O HOH A 788 1555 1555 2.30 CISPEP 1 GLY A 73 PRO A 74 0 2.64 SITE 1 AC1 11 ARG A 8 ALA A 10 PRO A 11 SER A 12 SITE 2 AC1 11 GLU A 44 TYR A 187 ARG A 205 HIS A 209 SITE 3 AC1 11 HOH A 616 HOH A 634 HOH A 708 SITE 1 AC2 4 ARG A 83 LEU A 223 GLU A 281 HOH A 743 SITE 1 AC3 6 ILE A 343 GLU A 344 GLY A 346 PRO A 347 SITE 2 AC3 6 HOH A 787 HOH A 788 SITE 1 AC4 2 LYS A 243 HOH A 798 CRYST1 88.950 88.950 132.270 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011242 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011242 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007560 0.00000