HEADER DNA BINDING PROTEIN/DNA 20-JUL-12 4G82 TITLE CRYSTAL STRUCTURE OF P73 DNA-BINDING DOMAIN TETRAMER BOUND TO A FULL TITLE 2 RESPONSE-ELEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR PROTEIN P73; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 115-312; COMPND 5 SYNONYM: P53-LIKE TRANSCRIPTION FACTOR, P53-RELATED PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*GP*AP*AP*CP*AP*TP*GP*TP*TP*C)-3'); COMPND 9 CHAIN: E, F; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HUMAN, P73, TP73; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS BETA-IMMUNOGLOBULIN LIKE FOLD, TUMOR SUPPRESSOR, DNA, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.S.ETHAYATHULLA,H.VIADIU REVDAT 4 13-SEP-23 4G82 1 REMARK SEQADV LINK REVDAT 3 17-JUL-19 4G82 1 REMARK REVDAT 2 20-FEB-13 4G82 1 REMARK REVDAT 1 16-JAN-13 4G82 0 JRNL AUTH A.S.ETHAYATHULLA,H.VIADIU JRNL TITL CRYSTAL STRUCTURE OF P73 DNA-BINDING DOMAIN TETRAMER BOUND JRNL TITL 2 TO A FULL RESPONSE-ELEMENT JRNL REF J.BIOL.CHEM. 2013 JRNL REFN ESSN 1083-351X REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 11319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8724 - 4.9237 1.00 2818 132 0.2122 0.2209 REMARK 3 2 4.9237 - 3.9089 1.00 2698 141 0.2263 0.2680 REMARK 3 3 3.9089 - 3.4150 1.00 2664 133 0.2727 0.3122 REMARK 3 4 3.4150 - 3.1028 0.98 2596 137 0.2935 0.3513 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.25000 REMARK 3 B22 (A**2) : 9.25000 REMARK 3 B33 (A**2) : -18.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3694 REMARK 3 ANGLE : 2.157 5104 REMARK 3 CHIRALITY : 0.089 557 REMARK 3 PLANARITY : 0.013 605 REMARK 3 DIHEDRAL : 21.751 1423 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND (RESID 112:312 OR RESID 401:401 OR REMARK 3 RESID 501:508 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8355 -77.9061 -7.4746 REMARK 3 T TENSOR REMARK 3 T11: -0.8951 T22: -0.0430 REMARK 3 T33: -0.4708 T12: 0.2776 REMARK 3 T13: 0.7474 T23: -0.1014 REMARK 3 L TENSOR REMARK 3 L11: 0.0816 L22: 0.2812 REMARK 3 L33: 0.1365 L12: 0.0486 REMARK 3 L13: -0.0605 L23: -0.0600 REMARK 3 S TENSOR REMARK 3 S11: -0.2381 S12: 0.1654 S13: 0.1193 REMARK 3 S21: -0.1244 S22: -0.2491 S23: -0.4413 REMARK 3 S31: -0.0795 S32: -0.0511 S33: -0.4024 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND (RESID 113:312 OR RESID 401:401 OR REMARK 3 RESID 501:508 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.7204 -61.2945 2.4066 REMARK 3 T TENSOR REMARK 3 T11: -0.2824 T22: -0.0195 REMARK 3 T33: -0.2792 T12: 0.4350 REMARK 3 T13: 0.3353 T23: -0.3988 REMARK 3 L TENSOR REMARK 3 L11: 0.1368 L22: 0.1259 REMARK 3 L33: 0.1153 L12: 0.0422 REMARK 3 L13: 0.0242 L23: 0.1441 REMARK 3 S TENSOR REMARK 3 S11: -0.1104 S12: 0.0449 S13: 0.3369 REMARK 3 S21: -0.1770 S22: -0.0399 S23: 0.2397 REMARK 3 S31: -0.5874 S32: -0.2332 S33: -0.1137 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN E AND (RESID 400:409 OR RESID 501:501 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3686 -54.6442 -3.2553 REMARK 3 T TENSOR REMARK 3 T11: 0.4971 T22: 0.4956 REMARK 3 T33: 0.1104 T12: -0.1869 REMARK 3 T13: 0.2181 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.0243 L22: 0.0116 REMARK 3 L33: 0.0162 L12: 0.0054 REMARK 3 L13: -0.0155 L23: 0.0033 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: -0.0327 S13: 0.0877 REMARK 3 S21: 0.0020 S22: 0.0487 S23: -0.0109 REMARK 3 S31: 0.0084 S32: -0.0373 S33: 0.0228 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN F AND (RESID 410:419 OR RESID 501:501 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0469 -54.6786 -2.1771 REMARK 3 T TENSOR REMARK 3 T11: 0.4417 T22: 0.3342 REMARK 3 T33: 0.0675 T12: 0.0324 REMARK 3 T13: 0.0413 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.0297 L22: 0.0158 REMARK 3 L33: 0.0136 L12: 0.0092 REMARK 3 L13: -0.0205 L23: -0.0042 REMARK 3 S TENSOR REMARK 3 S11: 0.0994 S12: 0.1174 S13: 0.0716 REMARK 3 S21: -0.0308 S22: 0.0523 S23: 0.0428 REMARK 3 S31: -0.0658 S32: -0.0184 S33: 0.0225 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 4G82 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000073855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11516 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VD0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 20% PEG3350 , PH 9.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 11.43900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.87800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.15850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.59750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 5.71950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -34.31700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 103 REMARK 465 GLY A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 HIS A 110 REMARK 465 HIS A 111 REMARK 465 MET B 103 REMARK 465 GLY B 104 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 HIS B 107 REMARK 465 HIS B 108 REMARK 465 HIS B 109 REMARK 465 HIS B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 470 PHE B 114 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 312 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN B 162 NE2 REMARK 480 ARG B 293 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 P DG E 400 O3' DC E 409 1554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 168 CD PRO B 168 N -0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC E 403 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DG E 406 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA F 414 C3' - O3' - P ANGL. DEV. = 10.7 DEGREES REMARK 500 DT F 415 O3' - P - O5' ANGL. DEV. = -16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 268 -1.11 82.28 REMARK 500 PRO B 169 -116.92 -36.40 REMARK 500 PRO B 170 139.84 -38.93 REMARK 500 LEU B 285 -75.66 -100.37 REMARK 500 HIS B 308 0.24 -66.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 169 PRO B 170 -142.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 193 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 194 SG REMARK 620 2 HIS A 197 ND1 92.9 REMARK 620 3 CYS A 258 SG 101.2 113.5 REMARK 620 4 CYS A 262 SG 119.4 102.5 123.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 194 SG REMARK 620 2 HIS B 197 ND1 96.8 REMARK 620 3 CYS B 258 SG 119.9 114.8 REMARK 620 4 CYS B 262 SG 131.2 90.4 99.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VD0 RELATED DB: PDB REMARK 900 STRUCTURE OF P73 DNA-BINDING DOMAIN TETRAMER MODULATES P73 REMARK 900 TRANSACTIVATION. REMARK 900 RELATED ID: 3VD1 RELATED DB: PDB REMARK 900 STRUCTURE OF P73 DNA-BINDING DOMAIN TETRAMER MODULATES P73 REMARK 900 TRANSACTIVATION. REMARK 900 RELATED ID: 3VD2 RELATED DB: PDB REMARK 900 STRUCTURE OF P73 DNA-BINDING DOMAIN TETRAMER MODULATES P73 REMARK 900 TRANSACTIVATION. DBREF 4G82 A 115 312 UNP O15350 P73_HUMAN 115 312 DBREF 4G82 B 115 312 UNP O15350 P73_HUMAN 115 312 DBREF 4G82 E 400 409 PDB 4G82 4G82 400 409 DBREF 4G82 F 410 419 PDB 4G82 4G82 410 419 SEQADV 4G82 MET A 103 UNP O15350 EXPRESSION TAG SEQADV 4G82 GLY A 104 UNP O15350 EXPRESSION TAG SEQADV 4G82 HIS A 105 UNP O15350 EXPRESSION TAG SEQADV 4G82 HIS A 106 UNP O15350 EXPRESSION TAG SEQADV 4G82 HIS A 107 UNP O15350 EXPRESSION TAG SEQADV 4G82 HIS A 108 UNP O15350 EXPRESSION TAG SEQADV 4G82 HIS A 109 UNP O15350 EXPRESSION TAG SEQADV 4G82 HIS A 110 UNP O15350 EXPRESSION TAG SEQADV 4G82 HIS A 111 UNP O15350 EXPRESSION TAG SEQADV 4G82 HIS A 112 UNP O15350 EXPRESSION TAG SEQADV 4G82 GLU A 113 UNP O15350 EXPRESSION TAG SEQADV 4G82 PHE A 114 UNP O15350 EXPRESSION TAG SEQADV 4G82 MET B 103 UNP O15350 EXPRESSION TAG SEQADV 4G82 GLY B 104 UNP O15350 EXPRESSION TAG SEQADV 4G82 HIS B 105 UNP O15350 EXPRESSION TAG SEQADV 4G82 HIS B 106 UNP O15350 EXPRESSION TAG SEQADV 4G82 HIS B 107 UNP O15350 EXPRESSION TAG SEQADV 4G82 HIS B 108 UNP O15350 EXPRESSION TAG SEQADV 4G82 HIS B 109 UNP O15350 EXPRESSION TAG SEQADV 4G82 HIS B 110 UNP O15350 EXPRESSION TAG SEQADV 4G82 HIS B 111 UNP O15350 EXPRESSION TAG SEQADV 4G82 HIS B 112 UNP O15350 EXPRESSION TAG SEQADV 4G82 GLU B 113 UNP O15350 EXPRESSION TAG SEQADV 4G82 PHE B 114 UNP O15350 EXPRESSION TAG SEQRES 1 A 210 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS GLU PHE ILE SEQRES 2 A 210 PRO SER ASN THR ASP TYR PRO GLY PRO HIS HIS PHE GLU SEQRES 3 A 210 VAL THR PHE GLN GLN SER SER THR ALA LYS SER ALA THR SEQRES 4 A 210 TRP THR TYR SER PRO LEU LEU LYS LYS LEU TYR CYS GLN SEQRES 5 A 210 ILE ALA LYS THR CYS PRO ILE GLN ILE LYS VAL SER THR SEQRES 6 A 210 PRO PRO PRO PRO GLY THR ALA ILE ARG ALA MET PRO VAL SEQRES 7 A 210 TYR LYS LYS ALA GLU HIS VAL THR ASP VAL VAL LYS ARG SEQRES 8 A 210 CYS PRO ASN HIS GLU LEU GLY ARG ASP PHE ASN GLU GLY SEQRES 9 A 210 GLN SER ALA PRO ALA SER HIS LEU ILE ARG VAL GLU GLY SEQRES 10 A 210 ASN ASN LEU SER GLN TYR VAL ASP ASP PRO VAL THR GLY SEQRES 11 A 210 ARG GLN SER VAL VAL VAL PRO TYR GLU PRO PRO GLN VAL SEQRES 12 A 210 GLY THR GLU PHE THR THR ILE LEU TYR ASN PHE MET CYS SEQRES 13 A 210 ASN SER SER CYS VAL GLY GLY MET ASN ARG ARG PRO ILE SEQRES 14 A 210 LEU ILE ILE ILE THR LEU GLU MET ARG ASP GLY GLN VAL SEQRES 15 A 210 LEU GLY ARG ARG SER PHE GLU GLY ARG ILE CYS ALA CYS SEQRES 16 A 210 PRO GLY ARG ASP ARG LYS ALA ASP GLU ASP HIS TYR ARG SEQRES 17 A 210 GLU GLN SEQRES 1 B 210 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS GLU PHE ILE SEQRES 2 B 210 PRO SER ASN THR ASP TYR PRO GLY PRO HIS HIS PHE GLU SEQRES 3 B 210 VAL THR PHE GLN GLN SER SER THR ALA LYS SER ALA THR SEQRES 4 B 210 TRP THR TYR SER PRO LEU LEU LYS LYS LEU TYR CYS GLN SEQRES 5 B 210 ILE ALA LYS THR CYS PRO ILE GLN ILE LYS VAL SER THR SEQRES 6 B 210 PRO PRO PRO PRO GLY THR ALA ILE ARG ALA MET PRO VAL SEQRES 7 B 210 TYR LYS LYS ALA GLU HIS VAL THR ASP VAL VAL LYS ARG SEQRES 8 B 210 CYS PRO ASN HIS GLU LEU GLY ARG ASP PHE ASN GLU GLY SEQRES 9 B 210 GLN SER ALA PRO ALA SER HIS LEU ILE ARG VAL GLU GLY SEQRES 10 B 210 ASN ASN LEU SER GLN TYR VAL ASP ASP PRO VAL THR GLY SEQRES 11 B 210 ARG GLN SER VAL VAL VAL PRO TYR GLU PRO PRO GLN VAL SEQRES 12 B 210 GLY THR GLU PHE THR THR ILE LEU TYR ASN PHE MET CYS SEQRES 13 B 210 ASN SER SER CYS VAL GLY GLY MET ASN ARG ARG PRO ILE SEQRES 14 B 210 LEU ILE ILE ILE THR LEU GLU MET ARG ASP GLY GLN VAL SEQRES 15 B 210 LEU GLY ARG ARG SER PHE GLU GLY ARG ILE CYS ALA CYS SEQRES 16 B 210 PRO GLY ARG ASP ARG LYS ALA ASP GLU ASP HIS TYR ARG SEQRES 17 B 210 GLU GLN SEQRES 1 E 10 DG DA DA DC DA DT DG DT DT DC SEQRES 1 F 10 DG DA DA DC DA DT DG DT DT DC HET ZN A 401 1 HET ZN B 401 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *16(H2 O) HELIX 1 1 LYS A 183 THR A 188 1 6 HELIX 2 2 CYS A 194 LEU A 199 1 6 HELIX 3 3 CYS A 297 GLN A 312 1 16 HELIX 4 4 CYS B 194 LEU B 199 1 6 HELIX 5 5 CYS B 297 GLU B 311 1 15 SHEET 1 A 4 PHE A 127 THR A 130 0 SHEET 2 A 4 THR A 158 VAL A 165 -1 O GLN A 162 N THR A 130 SHEET 3 A 4 THR A 250 PHE A 256 -1 O THR A 250 N ILE A 163 SHEET 4 A 4 ILE A 215 GLU A 218 -1 N GLU A 218 O LEU A 253 SHEET 1 B 7 TRP A 142 SER A 145 0 SHEET 2 B 7 LYS A 150 CYS A 153 -1 O LYS A 150 N SER A 145 SHEET 3 B 7 VAL A 284 ILE A 294 1 O ARG A 293 N LEU A 151 SHEET 4 B 7 ILE A 271 GLU A 278 -1 N ILE A 271 O GLY A 292 SHEET 5 B 7 ALA A 174 TYR A 181 -1 N ALA A 174 O GLU A 278 SHEET 6 B 7 GLN A 234 PRO A 239 -1 O VAL A 238 N ILE A 175 SHEET 7 B 7 GLN A 224 ASP A 227 -1 N GLN A 224 O VAL A 237 SHEET 1 C 4 GLU B 128 THR B 130 0 SHEET 2 C 4 CYS B 159 LYS B 164 -1 O GLN B 162 N THR B 130 SHEET 3 C 4 THR B 251 PHE B 256 -1 O TYR B 254 N CYS B 159 SHEET 4 C 4 ILE B 215 VAL B 217 -1 N ARG B 216 O ASN B 255 SHEET 1 D 7 THR B 143 SER B 145 0 SHEET 2 D 7 LYS B 150 CYS B 153 -1 O LYS B 150 N SER B 145 SHEET 3 D 7 VAL B 284 ILE B 294 1 O ARG B 293 N LEU B 151 SHEET 4 D 7 ILE B 271 GLU B 278 -1 N ILE B 271 O GLY B 292 SHEET 5 D 7 ALA B 174 TYR B 181 -1 N ALA B 174 O GLU B 278 SHEET 6 D 7 GLN B 234 PRO B 239 -1 O VAL B 238 N ILE B 175 SHEET 7 D 7 GLN B 224 ASP B 227 -1 N GLN B 224 O VAL B 237 LINK SG CYS A 194 ZN ZN A 401 1555 1555 2.26 LINK ND1 HIS A 197 ZN ZN A 401 1555 1555 2.01 LINK SG CYS A 258 ZN ZN A 401 1555 1555 2.37 LINK SG CYS A 262 ZN ZN A 401 1555 1555 2.48 LINK SG CYS B 194 ZN ZN B 401 1555 1555 2.28 LINK ND1 HIS B 197 ZN ZN B 401 1555 1555 1.97 LINK SG CYS B 258 ZN ZN B 401 1555 1555 2.27 LINK SG CYS B 262 ZN ZN B 401 1555 1555 2.30 SITE 1 AC1 4 CYS A 194 HIS A 197 CYS A 258 CYS A 262 SITE 1 AC2 4 CYS B 194 HIS B 197 CYS B 258 CYS B 262 CRYST1 175.472 175.472 34.317 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005699 0.003290 0.000000 0.00000 SCALE2 0.000000 0.006581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029140 0.00000