HEADER ISOMERASE 23-JUL-12 4G9B TITLE CRYSTAL STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE HOMOLOG FROM ESCHERICHIA TITLE 2 COLI, TARGET EFI-501172, WITH BOUND MG, OPEN LID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-PHOSPHOGLUCOMUTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-PGM; COMPND 5 EC: 5.4.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: STR. K-12 SUBSTR. MG1655; SOURCE 5 GENE: YCJU, B1317, JW1310; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS HAD, PUTATIVE PHOSPHOGLUCOMUTASE, ENZYME FUNCTION INITIATIVE, EFI, KEYWDS 2 STRUCTURAL GENOMICS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN, AUTHOR 2 S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, AUTHOR 3 B.HILLERICH,J.LOVE,R.D.SEIDEL,H.J.IMKER,D.DUNAWAY-MARIANO,K.N.ALLEN, AUTHOR 4 J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 2 13-SEP-23 4G9B 1 REMARK SEQADV LINK REVDAT 1 15-AUG-12 4G9B 0 JRNL AUTH M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO, JRNL AUTH 2 S.R.WASSERMAN,S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN, JRNL AUTH 3 S.CHOWDHURY,B.EVANS,J.HAMMONDS,B.HILLERICH,J.LOVE, JRNL AUTH 4 R.D.SEIDEL,H.J.IMKER,D.DUNAWAY-MARIANO,K.N.ALLEN,J.A.GERLT, JRNL AUTH 5 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE HOMOLOG FROM JRNL TITL 2 ESCHERICHIA COLI, TARGET EFI-501172, WITH BOUND MG, OPEN LID JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.5912 - 3.7776 0.98 2678 127 0.1504 0.1872 REMARK 3 2 3.7776 - 2.9997 1.00 2647 138 0.1580 0.2003 REMARK 3 3 2.9997 - 2.6209 1.00 2600 145 0.1688 0.2251 REMARK 3 4 2.6209 - 2.3814 1.00 2596 154 0.1617 0.2014 REMARK 3 5 2.3814 - 2.2108 1.00 2609 133 0.1588 0.1708 REMARK 3 6 2.2108 - 2.0805 1.00 2609 122 0.1655 0.1939 REMARK 3 7 2.0805 - 1.9764 1.00 2607 135 0.1667 0.1967 REMARK 3 8 1.9764 - 1.8904 1.00 2571 153 0.1801 0.2085 REMARK 3 9 1.8904 - 1.8176 1.00 2570 146 0.1952 0.2453 REMARK 3 10 1.8176 - 1.7549 1.00 2602 128 0.2207 0.2763 REMARK 3 11 1.7549 - 1.7000 1.00 2564 146 0.2539 0.2729 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1845 REMARK 3 ANGLE : 1.019 2521 REMARK 3 CHIRALITY : 0.069 283 REMARK 3 PLANARITY : 0.004 326 REMARK 3 DIHEDRAL : 17.230 661 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 0:17) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7111 23.1089 21.2926 REMARK 3 T TENSOR REMARK 3 T11: 0.1812 T22: 0.0864 REMARK 3 T33: 0.1691 T12: 0.0088 REMARK 3 T13: -0.0140 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 7.5676 L22: 5.7890 REMARK 3 L33: 4.9763 L12: 4.8145 REMARK 3 L13: 2.5991 L23: 1.4875 REMARK 3 S TENSOR REMARK 3 S11: -0.1903 S12: 0.1186 S13: 0.4282 REMARK 3 S21: -0.0740 S22: 0.0549 S23: 0.1449 REMARK 3 S31: 0.1026 S32: -0.0723 S33: 0.1016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 18:67) REMARK 3 ORIGIN FOR THE GROUP (A): -29.7503 14.2260 27.3392 REMARK 3 T TENSOR REMARK 3 T11: 0.2816 T22: 0.2197 REMARK 3 T33: 0.2705 T12: 0.0522 REMARK 3 T13: 0.0312 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 5.7341 L22: 2.8921 REMARK 3 L33: 5.1986 L12: -0.6086 REMARK 3 L13: -2.9205 L23: 1.4227 REMARK 3 S TENSOR REMARK 3 S11: 0.2916 S12: 0.1875 S13: 0.6185 REMARK 3 S21: -0.1424 S22: -0.0855 S23: 0.0267 REMARK 3 S31: -0.6324 S32: -0.1571 S33: -0.1738 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 68:87) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6993 5.8065 30.2421 REMARK 3 T TENSOR REMARK 3 T11: 0.1403 T22: 0.1263 REMARK 3 T33: 0.1596 T12: -0.0263 REMARK 3 T13: -0.0133 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 9.0177 L22: 4.1505 REMARK 3 L33: 6.8500 L12: -2.7707 REMARK 3 L13: -4.7914 L23: 2.2238 REMARK 3 S TENSOR REMARK 3 S11: -0.1360 S12: -0.4830 S13: -0.1628 REMARK 3 S21: 0.1447 S22: 0.1659 S23: 0.0276 REMARK 3 S31: -0.0630 S32: 0.1674 S33: -0.0200 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 88:226) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1474 24.4758 22.1076 REMARK 3 T TENSOR REMARK 3 T11: 0.1212 T22: 0.0811 REMARK 3 T33: 0.1094 T12: -0.0101 REMARK 3 T13: 0.0022 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 1.6543 L22: 2.4590 REMARK 3 L33: 2.3896 L12: -0.1101 REMARK 3 L13: -0.0620 L23: 0.9962 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: 0.0772 S13: 0.0600 REMARK 3 S21: 0.0477 S22: -0.0034 S23: -0.0612 REMARK 3 S31: 0.1398 S32: -0.0497 S33: 0.0142 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS REFINED UTILIZING THE REMARK 3 STRUCTURE AND GEOMETRIC RESTRAINTS OF BENOZIC ACID, HOWEVER THE REMARK 3 EXPERIMENTERS CAN NOT BE CERTAIN OF THE LIGANDS IDENTITY AS REMARK 3 BENZOIC ACID WAS NOT A COMPONENT OF THE CRYSTALLIZATION OR REMARK 3 PURIFICATION. REMARK 4 REMARK 4 4G9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX 225 HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30181 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 68.063 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : 0.10800 REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.87500 REMARK 200 R SYM FOR SHELL (I) : 0.87500 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3NAS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES PH 7.5, 150 MM REMARK 280 NACL, 10% GLYCEROL, 1 MM DTT, 5 MM MGCL); RESERVOIR (0.1 M BIS- REMARK 280 TRIS PROPANE:HCL, 1.8 M MAGNESIUM SULFATE); CRYOPROTECTION REMARK 280 (RESERVOIR, + 20% GLYCEROL), SITTING DROP VAPOR DIFFUCTION, REMARK 280 TEMPERATURE 298K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 64.58400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.28759 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 28.58867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 64.58400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 37.28759 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 28.58867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 64.58400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 37.28759 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 28.58867 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 64.58400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 37.28759 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 28.58867 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 64.58400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 37.28759 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 28.58867 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 64.58400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 37.28759 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.58867 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 74.57518 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 57.17733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 74.57518 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 57.17733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 74.57518 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 57.17733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 74.57518 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 57.17733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 74.57518 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 57.17733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 74.57518 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 57.17733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -160.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 74.57518 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 57.17733 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 407 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 410 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 431 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 437 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 448 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 TRP A 234 REMARK 465 SER A 235 REMARK 465 HIS A 236 REMARK 465 PRO A 237 REMARK 465 GLN A 238 REMARK 465 PHE A 239 REMARK 465 GLU A 240 REMARK 465 LYS A 241 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 10 -69.37 -94.76 REMARK 500 LEU A 10 -71.91 -95.17 REMARK 500 VAL A 13 -56.67 -124.81 REMARK 500 VAL A 13 -56.59 -124.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD2 REMARK 620 2 ASP A 11 O 89.5 REMARK 620 3 ASP A 172 OD1 87.4 92.8 REMARK 620 4 HOH A 401 O 178.5 91.3 93.8 REMARK 620 5 HOH A 402 O 88.8 172.9 94.1 90.2 REMARK 620 6 HOH A 403 O 89.0 95.6 170.9 89.6 77.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 404 O REMARK 620 2 HOH A 405 O 91.7 REMARK 620 3 HOH A 406 O 85.0 173.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 423 O REMARK 620 2 HOH A 449 O 96.5 REMARK 620 3 HOH A 496 O 170.4 88.1 REMARK 620 4 HOH A 551 O 88.6 84.9 83.3 REMARK 620 5 HOH A 567 O 94.0 100.6 93.5 173.6 REMARK 620 6 HOH A 568 O 84.2 166.6 89.4 81.8 92.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 310 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-501172 RELATED DB: TARGETTRACK DBREF 4G9B A 1 219 UNP P77366 PGMB_ECOLI 1 219 SEQADV 4G9B MET A -1 UNP P77366 INITIATING METHIONINE SEQADV 4G9B VAL A 0 UNP P77366 EXPRESSION TAG SEQADV 4G9B ALA A 220 UNP P77366 EXPRESSION TAG SEQADV 4G9B GLU A 221 UNP P77366 EXPRESSION TAG SEQADV 4G9B ASN A 222 UNP P77366 EXPRESSION TAG SEQADV 4G9B LEU A 223 UNP P77366 EXPRESSION TAG SEQADV 4G9B TYR A 224 UNP P77366 EXPRESSION TAG SEQADV 4G9B PHE A 225 UNP P77366 EXPRESSION TAG SEQADV 4G9B GLN A 226 UNP P77366 EXPRESSION TAG SEQADV 4G9B SER A 227 UNP P77366 EXPRESSION TAG SEQADV 4G9B HIS A 228 UNP P77366 EXPRESSION TAG SEQADV 4G9B HIS A 229 UNP P77366 EXPRESSION TAG SEQADV 4G9B HIS A 230 UNP P77366 EXPRESSION TAG SEQADV 4G9B HIS A 231 UNP P77366 EXPRESSION TAG SEQADV 4G9B HIS A 232 UNP P77366 EXPRESSION TAG SEQADV 4G9B HIS A 233 UNP P77366 EXPRESSION TAG SEQADV 4G9B TRP A 234 UNP P77366 EXPRESSION TAG SEQADV 4G9B SER A 235 UNP P77366 EXPRESSION TAG SEQADV 4G9B HIS A 236 UNP P77366 EXPRESSION TAG SEQADV 4G9B PRO A 237 UNP P77366 EXPRESSION TAG SEQADV 4G9B GLN A 238 UNP P77366 EXPRESSION TAG SEQADV 4G9B PHE A 239 UNP P77366 EXPRESSION TAG SEQADV 4G9B GLU A 240 UNP P77366 EXPRESSION TAG SEQADV 4G9B LYS A 241 UNP P77366 EXPRESSION TAG SEQRES 1 A 243 MET VAL MET LYS LEU GLN GLY VAL ILE PHE ASP LEU ASP SEQRES 2 A 243 GLY VAL ILE THR ASP THR ALA HIS LEU HIS PHE GLN ALA SEQRES 3 A 243 TRP GLN GLN ILE ALA ALA GLU ILE GLY ILE SER ILE ASP SEQRES 4 A 243 ALA GLN PHE ASN GLU SER LEU LYS GLY ILE SER ARG ASP SEQRES 5 A 243 GLU SER LEU ARG ARG ILE LEU GLN HIS GLY GLY LYS GLU SEQRES 6 A 243 GLY ASP PHE ASN SER GLN GLU ARG ALA GLN LEU ALA TYR SEQRES 7 A 243 ARG LYS ASN LEU LEU TYR VAL HIS SER LEU ARG GLU LEU SEQRES 8 A 243 THR VAL ASN ALA VAL LEU PRO GLY ILE ARG SER LEU LEU SEQRES 9 A 243 ALA ASP LEU ARG ALA GLN GLN ILE SER VAL GLY LEU ALA SEQRES 10 A 243 SER VAL SER LEU ASN ALA PRO THR ILE LEU ALA ALA LEU SEQRES 11 A 243 GLU LEU ARG GLU PHE PHE THR PHE CYS ALA ASP ALA SER SEQRES 12 A 243 GLN LEU LYS ASN SER LYS PRO ASP PRO GLU ILE PHE LEU SEQRES 13 A 243 ALA ALA CYS ALA GLY LEU GLY VAL PRO PRO GLN ALA CYS SEQRES 14 A 243 ILE GLY ILE GLU ASP ALA GLN ALA GLY ILE ASP ALA ILE SEQRES 15 A 243 ASN ALA SER GLY MET ARG SER VAL GLY ILE GLY ALA GLY SEQRES 16 A 243 LEU THR GLY ALA GLN LEU LEU LEU PRO SER THR GLU SER SEQRES 17 A 243 LEU THR TRP PRO ARG LEU SER ALA PHE TRP GLN ASN VAL SEQRES 18 A 243 ALA GLU ASN LEU TYR PHE GLN SER HIS HIS HIS HIS HIS SEQRES 19 A 243 HIS TRP SER HIS PRO GLN PHE GLU LYS HET MG A 301 1 HET MG A 302 1 HET CL A 303 1 HET MG A 304 1 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET CL A 308 1 HET UNL A 309 9 HET GOL A 310 6 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM UNL UNKNOWN LIGAND HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG 3(MG 2+) FORMUL 4 CL 2(CL 1-) FORMUL 6 SO4 3(O4 S 2-) FORMUL 11 GOL C3 H8 O3 FORMUL 12 HOH *180(H2 O) HELIX 1 1 THR A 17 ILE A 32 1 16 HELIX 2 2 GLN A 39 LYS A 45 5 7 HELIX 3 3 SER A 48 GLY A 60 1 13 HELIX 4 4 LYS A 62 PHE A 66 5 5 HELIX 5 5 ASN A 67 GLU A 88 1 22 HELIX 6 6 THR A 90 VAL A 94 5 5 HELIX 7 7 GLY A 97 GLN A 108 1 12 HELIX 8 8 ASN A 120 LEU A 128 1 9 HELIX 9 9 LEU A 130 PHE A 134 5 5 HELIX 10 10 ASP A 139 LEU A 143 5 5 HELIX 11 11 PRO A 150 GLY A 161 1 12 HELIX 12 12 PRO A 163 GLN A 165 5 3 HELIX 13 13 ALA A 173 GLY A 184 1 12 HELIX 14 14 SER A 203 LEU A 207 5 5 HELIX 15 15 THR A 208 ALA A 220 1 13 HELIX 16 16 ASN A 222 GLN A 226 5 5 SHEET 1 A 6 PHE A 136 CYS A 137 0 SHEET 2 A 6 SER A 111 LEU A 114 1 N LEU A 114 O PHE A 136 SHEET 3 A 6 GLY A 5 PHE A 8 1 N PHE A 8 O GLY A 113 SHEET 4 A 6 CYS A 167 GLU A 171 1 O ILE A 168 N ILE A 7 SHEET 5 A 6 ARG A 186 ILE A 190 1 O ARG A 186 N GLY A 169 SHEET 6 A 6 LEU A 199 LEU A 201 1 O LEU A 201 N GLY A 189 LINK OD2 ASP A 9 MG MG A 301 1555 1555 2.00 LINK O ASP A 11 MG MG A 301 1555 1555 2.02 LINK OD1 ASP A 172 MG MG A 301 1555 1555 2.06 LINK MG MG A 301 O HOH A 401 1555 1555 2.04 LINK MG MG A 301 O HOH A 402 1555 1555 2.06 LINK MG MG A 301 O HOH A 403 1555 1555 2.06 LINK MG MG A 302 O HOH A 404 1555 1555 2.12 LINK MG MG A 302 O HOH A 405 1555 1555 2.10 LINK MG MG A 302 O HOH A 406 1555 1555 2.12 LINK MG MG A 304 O HOH A 423 1555 1555 2.07 LINK MG MG A 304 O HOH A 449 1555 1555 2.07 LINK MG MG A 304 O HOH A 496 1555 1555 2.06 LINK MG MG A 304 O HOH A 551 1555 1555 2.06 LINK MG MG A 304 O HOH A 567 1555 1555 2.05 LINK MG MG A 304 O HOH A 568 1555 1555 2.06 CISPEP 1 LYS A 147 PRO A 148 0 11.09 SITE 1 AC1 6 ASP A 9 ASP A 11 ASP A 172 HOH A 401 SITE 2 AC1 6 HOH A 402 HOH A 403 SITE 1 AC2 3 HOH A 404 HOH A 405 HOH A 406 SITE 1 AC3 5 ASP A 9 LEU A 10 ASP A 11 SER A 116 SITE 2 AC3 5 HOH A 463 SITE 1 AC4 6 HOH A 423 HOH A 449 HOH A 496 HOH A 551 SITE 2 AC4 6 HOH A 567 HOH A 568 SITE 1 AC5 5 GLY A 97 ILE A 98 ARG A 99 SER A 100 SITE 2 AC5 5 HOH A 414 SITE 1 AC6 5 GLU A 129 LEU A 130 ARG A 131 GLU A 132 SITE 2 AC6 5 HOH A 493 SITE 1 AC7 6 HIS A 21 TYR A 82 SER A 118 ASN A 120 SITE 2 AC7 6 HOH A 453 HOH A 455 SITE 1 AC8 1 GLN A 174 SITE 1 AC9 4 LYS A 2 LEU A 3 TRP A 209 SER A 213 CRYST1 129.168 129.168 85.766 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007742 0.004470 0.000000 0.00000 SCALE2 0.000000 0.008940 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011660 0.00000