HEADER OXIDOREDUCTASE 24-JUL-12 4G9P TITLE STRUCTURE OF THE GCPE-MECPP (ISPG) COMPLEX FROM THERMUS THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1-HYDROXY-2-METHYL-2-(E)-BUTENYL 4-DIPHOSPHATE SYNTHASE; COMPND 5 EC: 1.17.7.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27 / ATCC BAA-163 / DSM 7039; SOURCE 5 GENE: GCPE, ISPG, TT_C1677; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQETTGCPE KEYWDS OXIDOREDUCTASE, ISOPRENOID BIOSYNTHESIS, NON MEVALONATE PATHWAY, KEYWDS 2 IRON-SULPHUR-CLUSTER, TIM-BARREL, MECPP EXPDTA X-RAY DIFFRACTION AUTHOR I.REKITTKE,H.JOMAA,U.ERMLER REVDAT 4 28-FEB-24 4G9P 1 REMARK LINK REVDAT 3 15-NOV-17 4G9P 1 REMARK REVDAT 2 17-OCT-12 4G9P 1 JRNL REVDAT 1 26-SEP-12 4G9P 0 JRNL AUTH I.REKITTKE,H.JOMAA,U.ERMLER JRNL TITL STRUCTURE OF THE GCPE (ISPG)-MECPP COMPLEX FROM THERMUS JRNL TITL 2 THERMOPHILUS. JRNL REF FEBS LETT. V. 586 3452 2012 JRNL REFN ISSN 0014-5793 JRNL PMID 22967895 JRNL DOI 10.1016/J.FEBSLET.2012.07.070 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 77355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3870 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8034 - 4.7052 1.00 3103 160 0.1875 0.1844 REMARK 3 2 4.7052 - 3.7351 1.00 2827 156 0.1451 0.1652 REMARK 3 3 3.7351 - 3.2631 1.00 2815 134 0.1618 0.1851 REMARK 3 4 3.2631 - 2.9648 1.00 2764 142 0.1790 0.2056 REMARK 3 5 2.9648 - 2.7524 1.00 2697 152 0.1701 0.2133 REMARK 3 6 2.7524 - 2.5901 1.00 2738 148 0.1691 0.2002 REMARK 3 7 2.5901 - 2.4604 1.00 2693 140 0.1694 0.1920 REMARK 3 8 2.4604 - 2.3533 1.00 2668 153 0.1670 0.1956 REMARK 3 9 2.3533 - 2.2627 1.00 2667 167 0.1621 0.1712 REMARK 3 10 2.2627 - 2.1846 1.00 2668 138 0.1730 0.2273 REMARK 3 11 2.1846 - 2.1163 1.00 2652 149 0.1750 0.1906 REMARK 3 12 2.1163 - 2.0558 1.00 2655 148 0.1746 0.2030 REMARK 3 13 2.0558 - 2.0017 1.00 2663 141 0.1748 0.2194 REMARK 3 14 2.0017 - 1.9529 1.00 2667 163 0.1779 0.2057 REMARK 3 15 1.9529 - 1.9085 1.00 2626 138 0.1791 0.2086 REMARK 3 16 1.9085 - 1.8678 1.00 2615 137 0.1774 0.2237 REMARK 3 17 1.8678 - 1.8305 1.00 2667 139 0.1883 0.2349 REMARK 3 18 1.8305 - 1.7959 1.00 2688 120 0.1789 0.2296 REMARK 3 19 1.7959 - 1.7639 1.00 2602 139 0.1894 0.2158 REMARK 3 20 1.7639 - 1.7340 1.00 2630 127 0.1864 0.2167 REMARK 3 21 1.7340 - 1.7060 0.99 2638 123 0.1898 0.2059 REMARK 3 22 1.7060 - 1.6797 0.98 2554 119 0.1998 0.2655 REMARK 3 23 1.6797 - 1.6550 0.97 2582 134 0.2181 0.2564 REMARK 3 24 1.6550 - 1.6317 0.94 2437 119 0.2332 0.2647 REMARK 3 25 1.6317 - 1.6097 0.92 2454 126 0.2387 0.2477 REMARK 3 26 1.6097 - 1.5888 0.89 2306 108 0.2706 0.2965 REMARK 3 27 1.5888 - 1.5689 0.87 2310 119 0.2914 0.3619 REMARK 3 28 1.5689 - 1.5500 0.83 2099 131 0.3004 0.3426 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 44.87 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.05730 REMARK 3 B22 (A**2) : 1.05730 REMARK 3 B33 (A**2) : -2.11450 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3269 REMARK 3 ANGLE : 1.791 4451 REMARK 3 CHIRALITY : 0.072 499 REMARK 3 PLANARITY : 0.007 575 REMARK 3 DIHEDRAL : 13.659 1280 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 2:50) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6153 20.6305 4.6609 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.0500 REMARK 3 T33: 0.1104 T12: -0.0184 REMARK 3 T13: -0.0129 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 3.0889 L22: 1.0015 REMARK 3 L33: 0.9172 L12: -0.4250 REMARK 3 L13: 0.7377 L23: -0.3691 REMARK 3 S TENSOR REMARK 3 S11: -0.0431 S12: 0.1271 S13: 0.0568 REMARK 3 S21: -0.0598 S22: 0.0386 S23: 0.0449 REMARK 3 S31: -0.3128 S32: 0.0686 S33: -0.0463 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 51:119) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5114 25.8878 16.8765 REMARK 3 T TENSOR REMARK 3 T11: 0.3701 T22: 0.0378 REMARK 3 T33: 0.1528 T12: -0.0336 REMARK 3 T13: -0.0098 T23: -0.0540 REMARK 3 L TENSOR REMARK 3 L11: 0.7414 L22: 0.6643 REMARK 3 L33: 0.6856 L12: -0.0039 REMARK 3 L13: -0.0747 L23: 0.2397 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: -0.0969 S13: 0.3437 REMARK 3 S21: 0.1911 S22: 0.0150 S23: -0.0238 REMARK 3 S31: -0.4285 S32: 0.1210 S33: -0.0110 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 120:169) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0312 14.7414 23.9266 REMARK 3 T TENSOR REMARK 3 T11: 0.2494 T22: 0.2246 REMARK 3 T33: 0.1716 T12: 0.0617 REMARK 3 T13: 0.0377 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.1014 L22: 1.9437 REMARK 3 L33: 1.1201 L12: 0.1975 REMARK 3 L13: -0.3002 L23: -0.5964 REMARK 3 S TENSOR REMARK 3 S11: -0.0717 S12: -0.3285 S13: 0.1795 REMARK 3 S21: 0.2742 S22: 0.1717 S23: 0.3269 REMARK 3 S31: -0.2565 S32: -0.3375 S33: -0.0389 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 170:304) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4205 8.1553 6.1860 REMARK 3 T TENSOR REMARK 3 T11: 0.1410 T22: 0.0606 REMARK 3 T33: 0.1159 T12: 0.0162 REMARK 3 T13: -0.0007 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.3345 L22: 0.3698 REMARK 3 L33: 0.8013 L12: 0.0894 REMARK 3 L13: 0.0839 L23: 0.0969 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: -0.0681 S13: 0.0542 REMARK 3 S21: 0.0215 S22: 0.0153 S23: 0.0802 REMARK 3 S31: -0.1092 S32: -0.0886 S33: -0.0129 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 305:359) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2757 5.7640 -19.1707 REMARK 3 T TENSOR REMARK 3 T11: 0.1705 T22: 0.1221 REMARK 3 T33: 0.1370 T12: -0.0506 REMARK 3 T13: 0.0116 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.9396 L22: 3.0722 REMARK 3 L33: 0.7905 L12: -0.1671 REMARK 3 L13: 0.0940 L23: 0.0772 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: -0.0416 S13: 0.2375 REMARK 3 S21: 0.0152 S22: 0.0359 S23: -0.1939 REMARK 3 S31: -0.2322 S32: 0.1388 S33: 0.0113 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 360:406) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6164 5.2961 -28.5693 REMARK 3 T TENSOR REMARK 3 T11: 0.1815 T22: 0.1667 REMARK 3 T33: 0.0994 T12: -0.0542 REMARK 3 T13: 0.0289 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 3.7024 L22: 5.8508 REMARK 3 L33: 2.6373 L12: -0.7755 REMARK 3 L13: -0.0279 L23: 0.1455 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.2009 S13: 0.1294 REMARK 3 S21: -0.1309 S22: -0.0480 S23: -0.2868 REMARK 3 S31: -0.2017 S32: 0.2345 S33: 0.0420 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G9P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000073914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79313 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45 % PENTAERYTHRIOL PROPOXYLATE 426, REMARK 280 0.1 M MES, 0.4 M KCL, 2.5 MM MECPP, PH 6.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 294.84667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 147.42333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 221.13500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.71167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 368.55833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 294.84667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 147.42333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 73.71167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 221.13500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 368.55833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LYS A 337 HD2 HIS A 355 1.31 REMARK 500 HH11 ARG A 131 O HOH A 1011 1.45 REMARK 500 OE1 GLU A 46 O HOH A 966 1.87 REMARK 500 O HOH A 1043 O HOH A 1046 1.88 REMARK 500 O HOH A 845 O HOH A 903 2.00 REMARK 500 O HOH A 619 O HOH A 699 2.14 REMARK 500 NH1 ARG A 131 O HOH A 1011 2.16 REMARK 500 O HOH A 952 O HOH A 959 2.16 REMARK 500 O HOH A 703 O HOH A 836 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 947 O HOH A 947 8555 1.46 REMARK 500 O HOH A 834 O HOH A 842 8665 1.70 REMARK 500 O HOH A 948 O HOH A 949 8565 1.83 REMARK 500 FE4 SF4 A 501 O1 CDI A 502 8555 1.97 REMARK 500 O HOH A 931 O HOH A 934 8565 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 90 -44.81 75.28 REMARK 500 SER A 148 54.30 -142.94 REMARK 500 ALA A 203 88.92 -156.18 REMARK 500 LYS A 405 137.05 78.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 505 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 266 O REMARK 620 2 PRO A 267 O 71.7 REMARK 620 3 GLU A 269 O 78.2 100.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 297 SG REMARK 620 2 SF4 A 501 S1 110.0 REMARK 620 3 SF4 A 501 S2 109.4 107.7 REMARK 620 4 SF4 A 501 S4 125.1 103.0 100.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 300 SG REMARK 620 2 SF4 A 501 S2 124.6 REMARK 620 3 SF4 A 501 S3 103.2 104.3 REMARK 620 4 SF4 A 501 S4 118.0 98.4 106.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 343 SG REMARK 620 2 SF4 A 501 S1 124.9 REMARK 620 3 SF4 A 501 S3 105.1 103.2 REMARK 620 4 SF4 A 501 S4 110.8 103.7 108.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CDI A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 507 DBREF 4G9P A 1 406 UNP Q72H18 ISPG_THET2 1 406 SEQRES 1 A 406 MET GLU GLY MET ARG ARG PRO THR PRO THR VAL TYR VAL SEQRES 2 A 406 GLY ARG VAL PRO ILE GLY GLY ALA HIS PRO ILE ALA VAL SEQRES 3 A 406 GLN SER MET THR ASN THR PRO THR ARG ASP VAL GLU ALA SEQRES 4 A 406 THR THR ALA GLN VAL LEU GLU LEU HIS ARG ALA GLY SER SEQRES 5 A 406 GLU ILE VAL ARG LEU THR VAL ASN ASP GLU GLU ALA ALA SEQRES 6 A 406 LYS ALA VAL PRO GLU ILE LYS ARG ARG LEU LEU ALA GLU SEQRES 7 A 406 GLY VAL GLU VAL PRO LEU VAL GLY ASP PHE HIS PHE ASN SEQRES 8 A 406 GLY HIS LEU LEU LEU ARG LYS TYR PRO LYS MET ALA GLU SEQRES 9 A 406 ALA LEU ASP LYS PHE ARG ILE ASN PRO GLY THR LEU GLY SEQRES 10 A 406 ARG GLY ARG HIS LYS ASP GLU HIS PHE ALA GLU MET ILE SEQRES 11 A 406 ARG ILE ALA MET ASP LEU GLY LYS PRO VAL ARG ILE GLY SEQRES 12 A 406 ALA ASN TRP GLY SER LEU ASP PRO ALA LEU LEU THR GLU SEQRES 13 A 406 LEU MET ASP ARG ASN ALA SER ARG PRO GLU PRO LYS SER SEQRES 14 A 406 ALA HIS GLU VAL VAL LEU GLU ALA LEU VAL GLU SER ALA SEQRES 15 A 406 VAL ARG ALA TYR GLU ALA ALA LEU GLU MET GLY LEU GLY SEQRES 16 A 406 GLU ASP LYS LEU VAL LEU SER ALA LYS VAL SER LYS ALA SEQRES 17 A 406 ARG ASP LEU VAL TRP VAL TYR ARG GLU LEU ALA ARG ARG SEQRES 18 A 406 THR GLN ALA PRO LEU HIS LEU GLY LEU THR GLU ALA GLY SEQRES 19 A 406 MET GLY VAL LYS GLY ILE VAL ALA SER ALA ALA ALA LEU SEQRES 20 A 406 ALA PRO LEU LEU LEU GLU GLY ILE GLY ASP THR ILE ARG SEQRES 21 A 406 VAL SER LEU THR PRO SER PRO LYS GLU PRO ARG THR LYS SEQRES 22 A 406 GLU VAL GLU VAL ALA GLN GLU ILE LEU GLN ALA LEU GLY SEQRES 23 A 406 LEU ARG ALA PHE ALA PRO GLU VAL THR SER CYS PRO GLY SEQRES 24 A 406 CYS GLY ARG THR THR SER THR PHE PHE GLN GLU LEU ALA SEQRES 25 A 406 GLU GLU VAL SER ARG ARG LEU LYS GLU ARG LEU PRO GLU SEQRES 26 A 406 TRP ARG ALA ARG TYR PRO GLY VAL GLU GLU LEU LYS VAL SEQRES 27 A 406 ALA VAL MET GLY CYS VAL VAL ASN GLY PRO GLY GLU SER SEQRES 28 A 406 LYS HIS ALA HIS ILE GLY ILE SER LEU PRO GLY ALA GLY SEQRES 29 A 406 GLU GLU PRO LYS ALA PRO VAL TYR ALA ASP GLY LYS LEU SEQRES 30 A 406 LEU THR ILE LEU LYS GLY GLU GLY ILE ALA GLU GLU PHE SEQRES 31 A 406 LEU ARG LEU VAL GLU ASP TYR VAL LYS THR ARG PHE ALA SEQRES 32 A 406 PRO LYS ALA HET SF4 A 501 8 HET CDI A 502 16 HET MES A 503 25 HET CL A 504 1 HET K A 505 1 HET MES A 506 25 HET CL A 507 1 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM CDI 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM CL CHLORIDE ION HETNAM K POTASSIUM ION FORMUL 2 SF4 FE4 S4 FORMUL 3 CDI C5 H12 O9 P2 FORMUL 4 MES 2(C6 H13 N O4 S) FORMUL 5 CL 2(CL 1-) FORMUL 6 K K 1+ FORMUL 9 HOH *455(H2 O) HELIX 1 1 ASP A 36 GLY A 51 1 16 HELIX 2 2 ASP A 61 GLU A 78 1 18 HELIX 3 3 ASN A 91 TYR A 99 1 9 HELIX 4 4 TYR A 99 LEU A 106 1 8 HELIX 5 5 GLY A 119 GLY A 137 1 19 HELIX 6 6 GLY A 147 LEU A 149 5 3 HELIX 7 7 ASP A 150 ARG A 164 1 15 HELIX 8 8 SER A 169 GLY A 193 1 25 HELIX 9 9 GLY A 195 ASP A 197 5 3 HELIX 10 10 LYS A 207 THR A 222 1 16 HELIX 11 11 MET A 235 GLU A 253 1 19 HELIX 12 12 THR A 272 LEU A 285 1 14 HELIX 13 13 THR A 304 TYR A 330 1 27 HELIX 14 14 GLY A 332 GLU A 335 5 4 HELIX 15 15 ASN A 346 ALA A 354 1 9 HELIX 16 16 GLY A 385 PHE A 402 1 18 SHEET 1 A 2 VAL A 11 VAL A 13 0 SHEET 2 A 2 VAL A 16 ILE A 18 -1 O VAL A 16 N VAL A 13 SHEET 1 B 8 LEU A 199 LYS A 204 0 SHEET 2 B 8 VAL A 140 ASN A 145 1 N ILE A 142 O VAL A 200 SHEET 3 B 8 LYS A 108 ILE A 111 1 N ILE A 111 O GLY A 143 SHEET 4 B 8 LEU A 84 ASP A 87 1 N GLY A 86 O ARG A 110 SHEET 5 B 8 ILE A 54 THR A 58 1 N LEU A 57 O VAL A 85 SHEET 6 B 8 ALA A 25 MET A 29 1 N SER A 28 O ARG A 56 SHEET 7 B 8 THR A 258 ILE A 259 1 O ILE A 259 N ALA A 25 SHEET 8 B 8 HIS A 227 LEU A 228 1 N LEU A 228 O THR A 258 SHEET 1 C 5 GLU A 293 SER A 296 0 SHEET 2 C 5 LYS A 337 MET A 341 1 O VAL A 338 N THR A 295 SHEET 3 C 5 ILE A 356 SER A 359 1 O ILE A 358 N MET A 341 SHEET 4 C 5 LYS A 368 ALA A 373 -1 O TYR A 372 N GLY A 357 SHEET 5 C 5 LYS A 376 LYS A 382 -1 O LEU A 378 N VAL A 371 LINK O SER A 266 K K A 505 1555 1555 2.86 LINK O PRO A 267 K K A 505 1555 1555 3.03 LINK O GLU A 269 K K A 505 1555 1555 2.66 LINK SG CYS A 297 FE3 SF4 A 501 1555 1555 2.32 LINK SG CYS A 300 FE1 SF4 A 501 1555 1555 2.31 LINK SG CYS A 343 FE2 SF4 A 501 1555 1555 2.31 CISPEP 1 GLU A 2 GLY A 3 0 -1.97 CISPEP 2 GLY A 3 MET A 4 0 -7.53 CISPEP 3 LYS A 405 ALA A 406 0 -3.26 SITE 1 AC1 5 CYS A 297 GLY A 299 CYS A 300 CYS A 343 SITE 2 AC1 5 CDI A 502 SITE 1 AC2 13 ARG A 56 ASP A 87 HIS A 89 ARG A 110 SITE 2 AC2 13 ARG A 141 ASN A 145 LYS A 204 THR A 231 SITE 3 AC2 13 GLU A 232 ARG A 260 SER A 262 ASN A 346 SITE 4 AC2 13 SF4 A 501 SITE 1 AC3 10 GLU A 280 GLN A 283 ALA A 291 PRO A 292 SITE 2 AC3 10 GLU A 293 VAL A 294 SER A 316 HOH A 613 SITE 3 AC3 10 HOH A 630 HOH A 761 SITE 1 AC4 4 ASN A 31 GLN A 309 K A 505 HOH A 717 SITE 1 AC5 5 SER A 266 PRO A 267 GLU A 269 GLN A 309 SITE 2 AC5 5 CL A 504 SITE 1 AC6 4 LYS A 122 ASP A 123 PHE A 126 ALA A 185 SITE 1 AC7 4 GLN A 27 SER A 28 ARG A 56 ARG A 260 CRYST1 63.650 63.650 442.270 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015711 0.009071 0.000000 0.00000 SCALE2 0.000000 0.018141 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002261 0.00000