HEADER IMMUNE SYSTEM 25-JUL-12 4GAG TITLE STRUCTURE OF THE BROADLY NEUTRALIZING ANTIBODY AP33 IN COMPLEX WITH TITLE 2 ITS HCV EPITOPE (E2 RESIDUES 412-423) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN; COMPND 6 CHAIN: L; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: GENOME POLYPROTEIN; COMPND 9 CHAIN: P; COMPND 10 FRAGMENT: RESIDUES 412-423 OF HCV E2; COMPND 11 SYNONYM: CORE PROTEIN P21, CAPSID PROTEIN C, P21, CORE PROTEIN P19, COMPND 12 ENVELOPE GLYCOPROTEIN E1, GP32, GP35, ENVELOPE GLYCOPROTEIN E2, NS1, COMPND 13 GP68, GP70, P7, PROTEASE NS2-3, P23; COMPND 14 EC: 3.4.22.-; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 6 ORGANISM_TAXID: 10090; SOURCE 7 MOL_ID: 3; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS (ISOLATE GLASGOW); SOURCE 10 ORGANISM_COMMON: HCV; SOURCE 11 ORGANISM_TAXID: 329389 KEYWDS ANTIBODY FAB, NEUTRALIZING ANTIBODY, HCV E2 BINDING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.A.POTTER,A.OWSIANKA,A.G.N.ANGUS,N.JEFFERY,D.MATTHEWS,Z.KECK,P.LAU, AUTHOR 2 S.K.H.FOUNG,G.L.TAYLOR,A.H.PATEL REVDAT 3 25-DEC-19 4GAG 1 SEQADV SEQRES LINK REVDAT 2 21-NOV-12 4GAG 1 JRNL REVDAT 1 10-OCT-12 4GAG 0 JRNL AUTH J.A.POTTER,A.M.OWSIANKA,N.JEFFERY,D.J.MATTHEWS,Z.Y.KECK, JRNL AUTH 2 P.LAU,S.K.FOUNG,G.L.TAYLOR,A.H.PATEL JRNL TITL TOWARD A HEPATITIS C VIRUS VACCINE: THE STRUCTURAL BASIS OF JRNL TITL 2 HEPATITIS C VIRUS NEUTRALIZATION BY AP33, A BROADLY JRNL TITL 3 NEUTRALIZING ANTIBODY. JRNL REF J.VIROL. V. 86 12923 2012 JRNL REFN ISSN 0022-538X JRNL PMID 22993159 JRNL DOI 10.1128/JVI.02052-12 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 46640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2492 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2859 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3384 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 346 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.21000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3520 ; 0.028 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4823 ; 2.211 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 7.197 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;36.552 ;24.420 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 548 ;13.296 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;22.400 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 553 ; 0.196 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2649 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2215 ; 1.469 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3628 ; 2.466 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1303 ; 3.455 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1184 ; 5.474 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GAG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000073941. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49991 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 8K, 0.1M TRISHCL, 0.2M CACL2, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.82450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.45150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.82450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.45150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS ONE BIOLOGICAL UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 127 REMARK 465 SER H 128 REMARK 465 ALA H 129 REMARK 465 ALA H 130 REMARK 465 GLN H 131 REMARK 465 THR H 132 REMARK 465 ASN L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS L 134 CB CYS L 134 SG -0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 71 NH1 - CZ - NH2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG H 71 NE - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ASP H 101 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG L 18 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -11.02 78.67 REMARK 500 ASN H 43 -6.54 89.21 REMARK 500 SER H 160 -46.62 -133.30 REMARK 500 ALA L 51 -39.04 70.20 REMARK 500 ARG L 68 -88.21 67.58 REMARK 500 ASP L 76 117.30 -160.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GAJ RELATED DB: PDB REMARK 900 RELATED ID: 4GAY RELATED DB: PDB DBREF 4GAG P 412 423 UNP Q5EG65 POLG_HCVGL 412 423 DBREF 4GAG H 1 213 PDB 4GAG 4GAG 1 213 DBREF 4GAG L 1 214 PDB 4GAG 4GAG 1 214 SEQRES 1 H 218 GLU VAL GLN LEU GLN GLU SER GLY PRO SER LEU VAL LYS SEQRES 2 H 218 PRO SER GLN THR LEU SER LEU THR CYS SER VAL THR GLY SEQRES 3 H 218 ASP SER ILE THR SER GLY TYR TRP ASN TRP ILE ARG LYS SEQRES 4 H 218 PHE PRO GLY ASN LYS LEU GLU TYR MET GLY TYR ILE SER SEQRES 5 H 218 TYR SER GLY SER THR TYR TYR ASN LEU SER LEU ARG SER SEQRES 6 H 218 ARG ILE SER ILE THR ARG ASP THR SER LYS ASN GLN TYR SEQRES 7 H 218 TYR LEU GLN LEU ASN SER VAL THR THR GLU ASP THR ALA SEQRES 8 H 218 THR TYR TYR CYS ALA LEU ILE THR THR THR THR TYR ALA SEQRES 9 H 218 MET ASP TYR TRP GLY GLN GLY THR SER VAL THR VAL SER SEQRES 10 H 218 SER ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA SEQRES 11 H 218 PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR LEU SEQRES 12 H 218 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 218 VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 H 218 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 H 218 SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SER SEQRES 16 H 218 GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 H 218 THR LYS VAL ASP LYS LYS ILE VAL PRO ARG SEQRES 1 L 218 ASN ILE VAL LEU THR GLN SER PRO VAL SER LEU ALA VAL SEQRES 2 L 218 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 L 218 GLU SER VAL ASP GLY TYR GLY ASN SER PHE LEU HIS TRP SEQRES 4 L 218 PHE GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 L 218 TYR LEU ALA SER ASN LEU ASN SER GLY VAL PRO ALA ARG SEQRES 6 L 218 PHE SER GLY SER GLY SER ARG THR ASP PHE THR LEU THR SEQRES 7 L 218 ILE ASP PRO VAL GLU ALA ASP ASP ALA ALA THR TYR TYR SEQRES 8 L 218 CYS GLN GLN ASN ASN VAL ASP PRO TRP THR PHE GLY GLY SEQRES 9 L 218 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 L 218 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 L 218 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 L 218 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 L 218 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP SEQRES 14 L 218 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 L 218 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 L 218 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 L 218 ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 P 12 PCA LEU ILE ASN THR ASN GLY SER TRP HIS VAL ASN MODRES 4GAG PCA P 412 GLN PYROGLUTAMIC ACID HET PCA P 412 8 HET GOL H 301 6 HET GOL H 302 6 HETNAM PCA PYROGLUTAMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PCA C5 H7 N O3 FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *346(H2 O) HELIX 1 1 THR H 83 THR H 87 5 5 HELIX 2 2 SER H 156 SER H 158 5 3 HELIX 3 3 PRO H 200 SER H 203 5 4 HELIX 4 4 GLU L 79 ALA L 83 5 5 HELIX 5 5 SER L 121 SER L 127 1 7 HELIX 6 6 LYS L 183 GLU L 187 1 5 SHEET 1 A 4 GLN H 3 SER H 7 0 SHEET 2 A 4 LEU H 18 THR H 25 -1 O SER H 23 N GLN H 5 SHEET 3 A 4 GLN H 77 LEU H 82 -1 O TYR H 78 N CYS H 22 SHEET 4 A 4 ILE H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 B 6 LEU H 11 VAL H 12 0 SHEET 2 B 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 B 6 ALA H 88 ILE H 95 -1 N TYR H 90 O THR H 107 SHEET 4 B 6 TYR H 33 LYS H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 B 6 LEU H 45 SER H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 B 6 THR H 57 TYR H 59 -1 O TYR H 58 N TYR H 50 SHEET 1 C 4 LEU H 11 VAL H 12 0 SHEET 2 C 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 C 4 ALA H 88 ILE H 95 -1 N TYR H 90 O THR H 107 SHEET 4 C 4 MET H 100B TRP H 103 -1 O TYR H 102 N LEU H 94 SHEET 1 D 4 SER H 120 LEU H 124 0 SHEET 2 D 4 MET H 135 TYR H 145 -1 O LEU H 141 N TYR H 122 SHEET 3 D 4 LEU H 174 PRO H 184 -1 O LEU H 177 N VAL H 142 SHEET 4 D 4 VAL H 163 THR H 165 -1 N HIS H 164 O SER H 180 SHEET 1 E 4 SER H 120 LEU H 124 0 SHEET 2 E 4 MET H 135 TYR H 145 -1 O LEU H 141 N TYR H 122 SHEET 3 E 4 LEU H 174 PRO H 184 -1 O LEU H 177 N VAL H 142 SHEET 4 E 4 VAL H 169 GLN H 171 -1 N GLN H 171 O LEU H 174 SHEET 1 F 3 THR H 151 TRP H 154 0 SHEET 2 F 3 THR H 194 HIS H 199 -1 O ASN H 196 N THR H 153 SHEET 3 F 3 THR H 204 LYS H 209 -1 O VAL H 206 N VAL H 197 SHEET 1 G 4 LEU L 4 SER L 7 0 SHEET 2 G 4 ALA L 19 ALA L 25 -1 O SER L 22 N SER L 7 SHEET 3 G 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 G 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 H 6 SER L 10 SER L 14 0 SHEET 2 H 6 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 H 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 H 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 H 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 H 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 I 4 SER L 10 SER L 14 0 SHEET 2 I 4 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 I 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 I 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 J 2 ASP L 27C GLY L 27D 0 SHEET 2 J 2 ASN L 30 SER L 31 -1 O ASN L 30 N GLY L 27D SHEET 1 K 4 THR L 114 PHE L 118 0 SHEET 2 K 4 GLY L 129 PHE L 139 -1 O ASN L 137 N THR L 114 SHEET 3 K 4 TYR L 173 THR L 182 -1 O SER L 177 N CYS L 134 SHEET 4 K 4 VAL L 159 TRP L 163 -1 N SER L 162 O SER L 176 SHEET 1 L 4 SER L 153 ARG L 155 0 SHEET 2 L 4 ILE L 144 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 L 4 SER L 191 HIS L 198 -1 O THR L 193 N LYS L 149 SHEET 4 L 4 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SHEET 1 M 2 ILE P 414 THR P 416 0 SHEET 2 M 2 SER P 419 HIS P 421 -1 O HIS P 421 N ILE P 414 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.10 SSBOND 2 CYS H 140 CYS H 195 1555 1555 2.02 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.16 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.08 LINK C PCA P 412 N LEU P 413 1555 1555 1.35 CISPEP 1 PHE H 146 PRO H 147 0 -7.48 CISPEP 2 GLU H 148 PRO H 149 0 6.19 CISPEP 3 TRP H 188 PRO H 189 0 5.01 CISPEP 4 SER L 7 PRO L 8 0 -0.48 CISPEP 5 ASP L 76 PRO L 77 0 -4.53 CISPEP 6 ASP L 94 PRO L 95 0 -2.12 CISPEP 7 TYR L 140 PRO L 141 0 -0.52 SITE 1 AC1 8 PRO H 118 PRO H 119 SER H 120 VAL H 121 SITE 2 AC1 8 THR H 204 LYS H 208 HOH H 481 GLU L 123 SITE 1 AC2 7 HIS H 164 HOH H 471 HOH H 490 THR L 164 SITE 2 AC2 7 ASP L 165 GLN L 166 ASP L 167 CRYST1 127.649 56.903 81.802 90.00 113.90 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007834 0.000000 0.003471 0.00000 SCALE2 0.000000 0.017574 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013371 0.00000