data_4GAK # _entry.id 4GAK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4GAK RCSB RCSB073945 WWPDB D_1000073945 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id APC103790 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4GAK _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-07-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category CASP _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, C.' 1 'Wu, R.' 2 'Endres, M.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal structure of acyl-ACP thioesterase from Spirosoma linguale' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chang, C.' 1 primary 'Wu, R.' 2 primary 'Endres, M.' 3 primary 'Joachimiak, A.' 4 # _cell.length_a 61.657 _cell.length_b 61.657 _cell.length_c 155.945 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4GAK _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 4GAK _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 92 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Acyl-ACP thioesterase' 28969.480 1 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 205 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)AFIQTDTFTLRGYECDAFGR(MSE)SIPAL(MSE)NL(MSE)QESANRNAIDYGIGIADLAQKGVGW(MSE) L(MSE)RFCLRIHQYPRYGDTIQL(MSE)TYPTTVDKYFIHRDFRVLATDGTLLADARSTWLVFS(MSE)EKRS(MSE)V PLPDFIRQLSPPANVDPLPALPLKPDFQTASFATAASKSVQVGWLNIDQNQHVNNVAYVQWLLEGVDSEIVQTREIAEID LVYRTESHWHDWLSVQSVTETDNSVLHRISQTESGKDVLLARSRWR ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMAFIQTDTFTLRGYECDAFGRMSIPALMNLMQESANRNAIDYGIGIADLAQKGVGWMLMRFCLRIHQYPRYGDTIQL MTYPTTVDKYFIHRDFRVLATDGTLLADARSTWLVFSMEKRSMVPLPDFIRQLSPPANVDPLPALPLKPDFQTASFATAA SKSVQVGWLNIDQNQHVNNVAYVQWLLEGVDSEIVQTREIAEIDLVYRTESHWHDWLSVQSVTETDNSVLHRISQTESGK DVLLARSRWR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC103790 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ALA n 1 6 PHE n 1 7 ILE n 1 8 GLN n 1 9 THR n 1 10 ASP n 1 11 THR n 1 12 PHE n 1 13 THR n 1 14 LEU n 1 15 ARG n 1 16 GLY n 1 17 TYR n 1 18 GLU n 1 19 CYS n 1 20 ASP n 1 21 ALA n 1 22 PHE n 1 23 GLY n 1 24 ARG n 1 25 MSE n 1 26 SER n 1 27 ILE n 1 28 PRO n 1 29 ALA n 1 30 LEU n 1 31 MSE n 1 32 ASN n 1 33 LEU n 1 34 MSE n 1 35 GLN n 1 36 GLU n 1 37 SER n 1 38 ALA n 1 39 ASN n 1 40 ARG n 1 41 ASN n 1 42 ALA n 1 43 ILE n 1 44 ASP n 1 45 TYR n 1 46 GLY n 1 47 ILE n 1 48 GLY n 1 49 ILE n 1 50 ALA n 1 51 ASP n 1 52 LEU n 1 53 ALA n 1 54 GLN n 1 55 LYS n 1 56 GLY n 1 57 VAL n 1 58 GLY n 1 59 TRP n 1 60 MSE n 1 61 LEU n 1 62 MSE n 1 63 ARG n 1 64 PHE n 1 65 CYS n 1 66 LEU n 1 67 ARG n 1 68 ILE n 1 69 HIS n 1 70 GLN n 1 71 TYR n 1 72 PRO n 1 73 ARG n 1 74 TYR n 1 75 GLY n 1 76 ASP n 1 77 THR n 1 78 ILE n 1 79 GLN n 1 80 LEU n 1 81 MSE n 1 82 THR n 1 83 TYR n 1 84 PRO n 1 85 THR n 1 86 THR n 1 87 VAL n 1 88 ASP n 1 89 LYS n 1 90 TYR n 1 91 PHE n 1 92 ILE n 1 93 HIS n 1 94 ARG n 1 95 ASP n 1 96 PHE n 1 97 ARG n 1 98 VAL n 1 99 LEU n 1 100 ALA n 1 101 THR n 1 102 ASP n 1 103 GLY n 1 104 THR n 1 105 LEU n 1 106 LEU n 1 107 ALA n 1 108 ASP n 1 109 ALA n 1 110 ARG n 1 111 SER n 1 112 THR n 1 113 TRP n 1 114 LEU n 1 115 VAL n 1 116 PHE n 1 117 SER n 1 118 MSE n 1 119 GLU n 1 120 LYS n 1 121 ARG n 1 122 SER n 1 123 MSE n 1 124 VAL n 1 125 PRO n 1 126 LEU n 1 127 PRO n 1 128 ASP n 1 129 PHE n 1 130 ILE n 1 131 ARG n 1 132 GLN n 1 133 LEU n 1 134 SER n 1 135 PRO n 1 136 PRO n 1 137 ALA n 1 138 ASN n 1 139 VAL n 1 140 ASP n 1 141 PRO n 1 142 LEU n 1 143 PRO n 1 144 ALA n 1 145 LEU n 1 146 PRO n 1 147 LEU n 1 148 LYS n 1 149 PRO n 1 150 ASP n 1 151 PHE n 1 152 GLN n 1 153 THR n 1 154 ALA n 1 155 SER n 1 156 PHE n 1 157 ALA n 1 158 THR n 1 159 ALA n 1 160 ALA n 1 161 SER n 1 162 LYS n 1 163 SER n 1 164 VAL n 1 165 GLN n 1 166 VAL n 1 167 GLY n 1 168 TRP n 1 169 LEU n 1 170 ASN n 1 171 ILE n 1 172 ASP n 1 173 GLN n 1 174 ASN n 1 175 GLN n 1 176 HIS n 1 177 VAL n 1 178 ASN n 1 179 ASN n 1 180 VAL n 1 181 ALA n 1 182 TYR n 1 183 VAL n 1 184 GLN n 1 185 TRP n 1 186 LEU n 1 187 LEU n 1 188 GLU n 1 189 GLY n 1 190 VAL n 1 191 ASP n 1 192 SER n 1 193 GLU n 1 194 ILE n 1 195 VAL n 1 196 GLN n 1 197 THR n 1 198 ARG n 1 199 GLU n 1 200 ILE n 1 201 ALA n 1 202 GLU n 1 203 ILE n 1 204 ASP n 1 205 LEU n 1 206 VAL n 1 207 TYR n 1 208 ARG n 1 209 THR n 1 210 GLU n 1 211 SER n 1 212 HIS n 1 213 TRP n 1 214 HIS n 1 215 ASP n 1 216 TRP n 1 217 LEU n 1 218 SER n 1 219 VAL n 1 220 GLN n 1 221 SER n 1 222 VAL n 1 223 THR n 1 224 GLU n 1 225 THR n 1 226 ASP n 1 227 ASN n 1 228 SER n 1 229 VAL n 1 230 LEU n 1 231 HIS n 1 232 ARG n 1 233 ILE n 1 234 SER n 1 235 GLN n 1 236 THR n 1 237 GLU n 1 238 SER n 1 239 GLY n 1 240 LYS n 1 241 ASP n 1 242 VAL n 1 243 LEU n 1 244 LEU n 1 245 ALA n 1 246 ARG n 1 247 SER n 1 248 ARG n 1 249 TRP n 1 250 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Slin_6353 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 33905 / DSM 74 / LMG 10896' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Spirosoma linguale' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 504472 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pMCSG68 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D2QU30_SPILD _struct_ref.pdbx_db_accession D2QU30 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAFIQTDTFTLRGYECDAFGRMSIPALMNLMQESANRNAIDYGIGIADLAQKGVGWMLMRFCLRIHQYPRYGDTIQLMTY PTTVDKYFIHRDFRVLATDGTLLADARSTWLVFSMEKRSMVPLPDFIRQLSPPANVDPLPALPLKPDFQTASFATAASKS VQVGWLNIDQNQHVNNVAYVQWLLEGVDSEIVQTREIAEIDLVYRTESHWHDWLSVQSVTETDNSVLHRISQTESGKDVL LARSRWR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4GAK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 250 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession D2QU30 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 247 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 247 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4GAK SER A 1 ? UNP D2QU30 ? ? 'EXPRESSION TAG' -2 1 1 4GAK ASN A 2 ? UNP D2QU30 ? ? 'EXPRESSION TAG' -1 2 1 4GAK ALA A 3 ? UNP D2QU30 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4GAK _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.56 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 51.92 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M MES, 1.26M Ammonium Sulfate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-06-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(111) double crystal' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97929 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97929 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 4GAK _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.9 _reflns.d_resolution_low 50 _reflns.number_all 24520 _reflns.number_obs 24494 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.111 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 42.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 13.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.92 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.619 _reflns_shell.meanI_over_sigI_obs 4.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 11.7 _reflns_shell.number_unique_all 614 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4GAK _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 50 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.0400 _refine.ls_number_reflns_obs 24327 _refine.ls_number_reflns_all 24327 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all 0.1872 _refine.ls_R_factor_obs 0.1872 _refine.ls_R_factor_R_work 0.1854 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2236 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1237 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 43.0480 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.8200 _refine.aniso_B[2][2] -0.8200 _refine.aniso_B[3][3] 1.6400 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9670 _refine.correlation_coeff_Fo_to_Fc_free 0.9540 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1440 _refine.pdbx_overall_ESU_R_Free 0.1360 _refine.overall_SU_ML 0.1020 _refine.overall_SU_B 6.6930 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 95.890 _refine.B_iso_min 24.470 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2008 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 205 _refine_hist.number_atoms_total 2226 _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2105 0.013 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2866 1.674 1.940 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 257 6.112 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 102 30.506 23.431 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 350 14.918 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 18 16.114 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 318 0.105 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1618 0.007 0.021 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.9010 _refine_ls_shell.d_res_low 1.9510 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 93.1300 _refine_ls_shell.number_reflns_R_work 1409 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3190 _refine_ls_shell.R_factor_R_free 0.3390 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 82 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1491 _refine_ls_shell.number_reflns_obs 14327 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4GAK _struct.title 'Crystal structure of acyl-ACP thioesterase from Spirosoma linguale' _struct.pdbx_descriptor 'Acyl-ACP thioesterase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GAK _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'MCSG, PSI-BIOLOGY, STRUCTURAL GENOMICS, Midwest Center for Structural Genomics, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 15 ? CYS A 19 ? ARG A 12 CYS A 16 5 ? 5 HELX_P HELX_P2 2 SER A 26 ? TYR A 45 ? SER A 23 TYR A 42 1 ? 20 HELX_P HELX_P3 3 GLY A 48 ? GLN A 54 ? GLY A 45 GLN A 51 1 ? 7 HELX_P HELX_P4 4 PRO A 127 ? GLN A 132 ? PRO A 124 GLN A 129 1 ? 6 HELX_P HELX_P5 5 PRO A 149 ? ALA A 154 ? PRO A 146 ALA A 151 5 ? 6 HELX_P HELX_P6 6 GLY A 167 ? ILE A 171 ? GLY A 164 ILE A 168 5 ? 5 HELX_P HELX_P7 7 ASN A 178 ? GLY A 189 ? ASN A 175 GLY A 186 1 ? 12 HELX_P HELX_P8 8 ASP A 191 ? ARG A 198 ? ASP A 188 ARG A 195 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.326 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A ALA 5 N ? ? A MSE 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A ARG 24 C A ? ? 1_555 A MSE 25 N ? ? A ARG 21 A MSE 22 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale ? ? A ARG 24 C B ? ? 1_555 A MSE 25 N ? ? A ARG 21 A MSE 22 1_555 ? ? ? ? ? ? ? 1.338 ? covale5 covale ? ? A MSE 25 C ? ? ? 1_555 A SER 26 N ? ? A MSE 22 A SER 23 1_555 ? ? ? ? ? ? ? 1.337 ? covale6 covale ? ? A LEU 30 C ? ? ? 1_555 A MSE 31 N ? ? A LEU 27 A MSE 28 1_555 ? ? ? ? ? ? ? 1.319 ? covale7 covale ? ? A MSE 31 C ? ? ? 1_555 A ASN 32 N ? ? A MSE 28 A ASN 29 1_555 ? ? ? ? ? ? ? 1.318 ? covale8 covale ? ? A LEU 33 C ? ? ? 1_555 A MSE 34 N ? ? A LEU 30 A MSE 31 1_555 ? ? ? ? ? ? ? 1.330 ? covale9 covale ? ? A MSE 34 C ? ? ? 1_555 A GLN 35 N ? ? A MSE 31 A GLN 32 1_555 ? ? ? ? ? ? ? 1.338 ? covale10 covale ? ? A TRP 59 C ? ? ? 1_555 A MSE 60 N A ? A TRP 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.329 ? covale11 covale ? ? A TRP 59 C ? ? ? 1_555 A MSE 60 N B ? A TRP 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.333 ? covale12 covale ? ? A MSE 60 C A ? ? 1_555 A LEU 61 N ? ? A MSE 57 A LEU 58 1_555 ? ? ? ? ? ? ? 1.329 ? covale13 covale ? ? A MSE 60 C B ? ? 1_555 A LEU 61 N ? ? A MSE 57 A LEU 58 1_555 ? ? ? ? ? ? ? 1.333 ? covale14 covale ? ? A LEU 61 C ? ? ? 1_555 A MSE 62 N A ? A LEU 58 A MSE 59 1_555 ? ? ? ? ? ? ? 1.331 ? covale15 covale ? ? A LEU 61 C ? ? ? 1_555 A MSE 62 N B ? A LEU 58 A MSE 59 1_555 ? ? ? ? ? ? ? 1.328 ? covale16 covale ? ? A MSE 62 C A ? ? 1_555 A ARG 63 N ? ? A MSE 59 A ARG 60 1_555 ? ? ? ? ? ? ? 1.333 ? covale17 covale ? ? A MSE 62 C B ? ? 1_555 A ARG 63 N ? ? A MSE 59 A ARG 60 1_555 ? ? ? ? ? ? ? 1.331 ? covale18 covale ? ? A LEU 80 C ? ? ? 1_555 A MSE 81 N ? ? A LEU 77 A MSE 78 1_555 ? ? ? ? ? ? ? 1.347 ? covale19 covale ? ? A MSE 81 C ? ? ? 1_555 A THR 82 N ? ? A MSE 78 A THR 79 1_555 ? ? ? ? ? ? ? 1.317 ? covale20 covale ? ? A SER 117 C ? ? ? 1_555 A MSE 118 N ? ? A SER 114 A MSE 115 1_555 ? ? ? ? ? ? ? 1.332 ? covale21 covale ? ? A MSE 118 C ? ? ? 1_555 A GLU 119 N ? ? A MSE 115 A GLU 116 1_555 ? ? ? ? ? ? ? 1.331 ? covale22 covale ? ? A SER 122 C ? ? ? 1_555 A MSE 123 N ? ? A SER 119 A MSE 120 1_555 ? ? ? ? ? ? ? 1.327 ? covale23 covale ? ? A MSE 123 C ? ? ? 1_555 A VAL 124 N ? ? A MSE 120 A VAL 121 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 10 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel B 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 8 ? THR A 13 ? GLN A 5 THR A 10 A 2 THR A 77 ? VAL A 87 ? THR A 74 VAL A 84 A 3 PHE A 91 ? ALA A 100 ? PHE A 88 ALA A 97 A 4 LEU A 105 ? SER A 117 ? LEU A 102 SER A 114 A 5 SER A 122 ? VAL A 124 ? SER A 119 VAL A 121 B 1 GLN A 8 ? THR A 13 ? GLN A 5 THR A 10 B 2 THR A 77 ? VAL A 87 ? THR A 74 VAL A 84 B 3 PHE A 91 ? ALA A 100 ? PHE A 88 ALA A 97 B 4 LEU A 105 ? SER A 117 ? LEU A 102 SER A 114 B 5 VAL A 57 ? ILE A 68 ? VAL A 54 ILE A 65 B 6 ILE A 200 ? TYR A 207 ? ILE A 197 TYR A 204 B 7 ASP A 241 ? TRP A 249 ? ASP A 238 TRP A 246 B 8 SER A 228 ? GLN A 235 ? SER A 225 GLN A 232 B 9 TRP A 216 ? THR A 225 ? TRP A 213 THR A 222 B 10 LYS A 162 ? GLN A 165 ? LYS A 159 GLN A 162 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 12 ? N PHE A 9 O ILE A 78 ? O ILE A 75 A 2 3 N MSE A 81 ? N MSE A 78 O ARG A 97 ? O ARG A 94 A 3 4 N ILE A 92 ? N ILE A 89 O TRP A 113 ? O TRP A 110 A 4 5 N SER A 117 ? N SER A 114 O SER A 122 ? O SER A 119 B 1 2 N PHE A 12 ? N PHE A 9 O ILE A 78 ? O ILE A 75 B 2 3 N MSE A 81 ? N MSE A 78 O ARG A 97 ? O ARG A 94 B 3 4 N ILE A 92 ? N ILE A 89 O TRP A 113 ? O TRP A 110 B 4 5 O ASP A 108 ? O ASP A 105 N ARG A 67 ? N ARG A 64 B 5 6 N PHE A 64 ? N PHE A 61 O LEU A 205 ? O LEU A 202 B 6 7 N ALA A 201 ? N ALA A 198 O ARG A 248 ? O ARG A 245 B 7 8 O VAL A 242 ? O VAL A 239 N ILE A 233 ? N ILE A 230 B 8 9 O ARG A 232 ? O ARG A 229 N GLN A 220 ? N GLN A 217 B 9 10 O LEU A 217 ? O LEU A 214 N VAL A 164 ? N VAL A 161 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL A 301' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A 302' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CL A 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 PHE A 12 ? PHE A 9 . ? 1_555 ? 2 AC1 8 THR A 13 ? THR A 10 . ? 7_556 ? 3 AC1 8 THR A 13 ? THR A 10 . ? 1_555 ? 4 AC1 8 ARG A 15 ? ARG A 12 . ? 7_556 ? 5 AC1 8 ARG A 15 ? ARG A 12 . ? 1_555 ? 6 AC1 8 HOH E . ? HOH A 502 . ? 7_556 ? 7 AC1 8 HOH E . ? HOH A 502 . ? 1_555 ? 8 AC1 8 HOH E . ? HOH A 553 . ? 1_555 ? 9 AC2 6 ALA A 38 ? ALA A 35 . ? 1_555 ? 10 AC2 6 ASN A 39 ? ASN A 36 . ? 1_555 ? 11 AC2 6 ALA A 42 ? ALA A 39 . ? 1_555 ? 12 AC2 6 TRP A 59 ? TRP A 56 . ? 1_555 ? 13 AC2 6 ARG A 94 ? ARG A 91 . ? 1_555 ? 14 AC2 6 HOH E . ? HOH A 433 . ? 1_555 ? 15 AC3 2 ASP A 150 ? ASP A 147 . ? 1_555 ? 16 AC3 2 ARG A 246 ? ARG A 243 . ? 1_555 ? # _atom_sites.entry_id 4GAK _atom_sites.fract_transf_matrix[1][1] 0.016219 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016219 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006413 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 -2 SER SER A . n A 1 2 ASN 2 -1 -1 ASN ASN A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 ALA 5 2 2 ALA ALA A . n A 1 6 PHE 6 3 3 PHE PHE A . n A 1 7 ILE 7 4 4 ILE ILE A . n A 1 8 GLN 8 5 5 GLN GLN A . n A 1 9 THR 9 6 6 THR THR A . n A 1 10 ASP 10 7 7 ASP ASP A . n A 1 11 THR 11 8 8 THR THR A . n A 1 12 PHE 12 9 9 PHE PHE A . n A 1 13 THR 13 10 10 THR THR A . n A 1 14 LEU 14 11 11 LEU LEU A . n A 1 15 ARG 15 12 12 ARG ARG A . n A 1 16 GLY 16 13 13 GLY GLY A . n A 1 17 TYR 17 14 14 TYR TYR A . n A 1 18 GLU 18 15 15 GLU GLU A . n A 1 19 CYS 19 16 16 CYS CYS A . n A 1 20 ASP 20 17 17 ASP ASP A . n A 1 21 ALA 21 18 18 ALA ALA A . n A 1 22 PHE 22 19 19 PHE PHE A . n A 1 23 GLY 23 20 20 GLY GLY A . n A 1 24 ARG 24 21 21 ARG ARG A . n A 1 25 MSE 25 22 22 MSE MSE A . n A 1 26 SER 26 23 23 SER SER A . n A 1 27 ILE 27 24 24 ILE ILE A . n A 1 28 PRO 28 25 25 PRO PRO A . n A 1 29 ALA 29 26 26 ALA ALA A . n A 1 30 LEU 30 27 27 LEU LEU A . n A 1 31 MSE 31 28 28 MSE MSE A . n A 1 32 ASN 32 29 29 ASN ASN A . n A 1 33 LEU 33 30 30 LEU LEU A . n A 1 34 MSE 34 31 31 MSE MSE A . n A 1 35 GLN 35 32 32 GLN GLN A . n A 1 36 GLU 36 33 33 GLU GLU A . n A 1 37 SER 37 34 34 SER SER A . n A 1 38 ALA 38 35 35 ALA ALA A . n A 1 39 ASN 39 36 36 ASN ASN A . n A 1 40 ARG 40 37 37 ARG ARG A . n A 1 41 ASN 41 38 38 ASN ASN A . n A 1 42 ALA 42 39 39 ALA ALA A . n A 1 43 ILE 43 40 40 ILE ILE A . n A 1 44 ASP 44 41 41 ASP ASP A . n A 1 45 TYR 45 42 42 TYR TYR A . n A 1 46 GLY 46 43 43 GLY GLY A . n A 1 47 ILE 47 44 44 ILE ILE A . n A 1 48 GLY 48 45 45 GLY GLY A . n A 1 49 ILE 49 46 46 ILE ILE A . n A 1 50 ALA 50 47 47 ALA ALA A . n A 1 51 ASP 51 48 48 ASP ASP A . n A 1 52 LEU 52 49 49 LEU LEU A . n A 1 53 ALA 53 50 50 ALA ALA A . n A 1 54 GLN 54 51 51 GLN GLN A . n A 1 55 LYS 55 52 52 LYS LYS A . n A 1 56 GLY 56 53 53 GLY GLY A . n A 1 57 VAL 57 54 54 VAL VAL A . n A 1 58 GLY 58 55 55 GLY GLY A . n A 1 59 TRP 59 56 56 TRP TRP A . n A 1 60 MSE 60 57 57 MSE MSE A . n A 1 61 LEU 61 58 58 LEU LEU A . n A 1 62 MSE 62 59 59 MSE MSE A . n A 1 63 ARG 63 60 60 ARG ARG A . n A 1 64 PHE 64 61 61 PHE PHE A . n A 1 65 CYS 65 62 62 CYS CYS A . n A 1 66 LEU 66 63 63 LEU LEU A . n A 1 67 ARG 67 64 64 ARG ARG A . n A 1 68 ILE 68 65 65 ILE ILE A . n A 1 69 HIS 69 66 66 HIS HIS A . n A 1 70 GLN 70 67 67 GLN GLN A . n A 1 71 TYR 71 68 68 TYR TYR A . n A 1 72 PRO 72 69 69 PRO PRO A . n A 1 73 ARG 73 70 70 ARG ARG A . n A 1 74 TYR 74 71 71 TYR TYR A . n A 1 75 GLY 75 72 72 GLY GLY A . n A 1 76 ASP 76 73 73 ASP ASP A . n A 1 77 THR 77 74 74 THR THR A . n A 1 78 ILE 78 75 75 ILE ILE A . n A 1 79 GLN 79 76 76 GLN GLN A . n A 1 80 LEU 80 77 77 LEU LEU A . n A 1 81 MSE 81 78 78 MSE MSE A . n A 1 82 THR 82 79 79 THR THR A . n A 1 83 TYR 83 80 80 TYR TYR A . n A 1 84 PRO 84 81 81 PRO PRO A . n A 1 85 THR 85 82 82 THR THR A . n A 1 86 THR 86 83 83 THR THR A . n A 1 87 VAL 87 84 84 VAL VAL A . n A 1 88 ASP 88 85 85 ASP ASP A . n A 1 89 LYS 89 86 86 LYS LYS A . n A 1 90 TYR 90 87 87 TYR TYR A . n A 1 91 PHE 91 88 88 PHE PHE A . n A 1 92 ILE 92 89 89 ILE ILE A . n A 1 93 HIS 93 90 90 HIS HIS A . n A 1 94 ARG 94 91 91 ARG ARG A . n A 1 95 ASP 95 92 92 ASP ASP A . n A 1 96 PHE 96 93 93 PHE PHE A . n A 1 97 ARG 97 94 94 ARG ARG A . n A 1 98 VAL 98 95 95 VAL VAL A . n A 1 99 LEU 99 96 96 LEU LEU A . n A 1 100 ALA 100 97 97 ALA ALA A . n A 1 101 THR 101 98 98 THR THR A . n A 1 102 ASP 102 99 99 ASP ASP A . n A 1 103 GLY 103 100 100 GLY GLY A . n A 1 104 THR 104 101 101 THR THR A . n A 1 105 LEU 105 102 102 LEU LEU A . n A 1 106 LEU 106 103 103 LEU LEU A . n A 1 107 ALA 107 104 104 ALA ALA A . n A 1 108 ASP 108 105 105 ASP ASP A . n A 1 109 ALA 109 106 106 ALA ALA A . n A 1 110 ARG 110 107 107 ARG ARG A . n A 1 111 SER 111 108 108 SER SER A . n A 1 112 THR 112 109 109 THR THR A . n A 1 113 TRP 113 110 110 TRP TRP A . n A 1 114 LEU 114 111 111 LEU LEU A . n A 1 115 VAL 115 112 112 VAL VAL A . n A 1 116 PHE 116 113 113 PHE PHE A . n A 1 117 SER 117 114 114 SER SER A . n A 1 118 MSE 118 115 115 MSE MSE A . n A 1 119 GLU 119 116 116 GLU GLU A . n A 1 120 LYS 120 117 117 LYS LYS A . n A 1 121 ARG 121 118 118 ARG ARG A . n A 1 122 SER 122 119 119 SER SER A . n A 1 123 MSE 123 120 120 MSE MSE A . n A 1 124 VAL 124 121 121 VAL VAL A . n A 1 125 PRO 125 122 122 PRO PRO A . n A 1 126 LEU 126 123 123 LEU LEU A . n A 1 127 PRO 127 124 124 PRO PRO A . n A 1 128 ASP 128 125 125 ASP ASP A . n A 1 129 PHE 129 126 126 PHE PHE A . n A 1 130 ILE 130 127 127 ILE ILE A . n A 1 131 ARG 131 128 128 ARG ARG A . n A 1 132 GLN 132 129 129 GLN GLN A . n A 1 133 LEU 133 130 130 LEU LEU A . n A 1 134 SER 134 131 131 SER SER A . n A 1 135 PRO 135 132 132 PRO PRO A . n A 1 136 PRO 136 133 133 PRO PRO A . n A 1 137 ALA 137 134 134 ALA ALA A . n A 1 138 ASN 138 135 135 ASN ASN A . n A 1 139 VAL 139 136 136 VAL VAL A . n A 1 140 ASP 140 137 137 ASP ASP A . n A 1 141 PRO 141 138 138 PRO PRO A . n A 1 142 LEU 142 139 139 LEU LEU A . n A 1 143 PRO 143 140 140 PRO PRO A . n A 1 144 ALA 144 141 141 ALA ALA A . n A 1 145 LEU 145 142 142 LEU LEU A . n A 1 146 PRO 146 143 143 PRO PRO A . n A 1 147 LEU 147 144 144 LEU LEU A . n A 1 148 LYS 148 145 145 LYS LYS A . n A 1 149 PRO 149 146 146 PRO PRO A . n A 1 150 ASP 150 147 147 ASP ASP A . n A 1 151 PHE 151 148 148 PHE PHE A . n A 1 152 GLN 152 149 149 GLN GLN A . n A 1 153 THR 153 150 150 THR THR A . n A 1 154 ALA 154 151 151 ALA ALA A . n A 1 155 SER 155 152 152 SER SER A . n A 1 156 PHE 156 153 153 PHE PHE A . n A 1 157 ALA 157 154 154 ALA ALA A . n A 1 158 THR 158 155 155 THR THR A . n A 1 159 ALA 159 156 156 ALA ALA A . n A 1 160 ALA 160 157 157 ALA ALA A . n A 1 161 SER 161 158 158 SER SER A . n A 1 162 LYS 162 159 159 LYS LYS A . n A 1 163 SER 163 160 160 SER SER A . n A 1 164 VAL 164 161 161 VAL VAL A . n A 1 165 GLN 165 162 162 GLN GLN A . n A 1 166 VAL 166 163 163 VAL VAL A . n A 1 167 GLY 167 164 164 GLY GLY A . n A 1 168 TRP 168 165 165 TRP TRP A . n A 1 169 LEU 169 166 166 LEU LEU A . n A 1 170 ASN 170 167 167 ASN ASN A . n A 1 171 ILE 171 168 168 ILE ILE A . n A 1 172 ASP 172 169 169 ASP ASP A . n A 1 173 GLN 173 170 170 GLN GLN A . n A 1 174 ASN 174 171 171 ASN ASN A . n A 1 175 GLN 175 172 172 GLN GLN A . n A 1 176 HIS 176 173 173 HIS HIS A . n A 1 177 VAL 177 174 174 VAL VAL A . n A 1 178 ASN 178 175 175 ASN ASN A . n A 1 179 ASN 179 176 176 ASN ASN A . n A 1 180 VAL 180 177 177 VAL VAL A . n A 1 181 ALA 181 178 178 ALA ALA A . n A 1 182 TYR 182 179 179 TYR TYR A . n A 1 183 VAL 183 180 180 VAL VAL A . n A 1 184 GLN 184 181 181 GLN GLN A . n A 1 185 TRP 185 182 182 TRP TRP A . n A 1 186 LEU 186 183 183 LEU LEU A . n A 1 187 LEU 187 184 184 LEU LEU A . n A 1 188 GLU 188 185 185 GLU GLU A . n A 1 189 GLY 189 186 186 GLY GLY A . n A 1 190 VAL 190 187 187 VAL VAL A . n A 1 191 ASP 191 188 188 ASP ASP A . n A 1 192 SER 192 189 189 SER SER A . n A 1 193 GLU 193 190 190 GLU GLU A . n A 1 194 ILE 194 191 191 ILE ILE A . n A 1 195 VAL 195 192 192 VAL VAL A . n A 1 196 GLN 196 193 193 GLN GLN A . n A 1 197 THR 197 194 194 THR THR A . n A 1 198 ARG 198 195 195 ARG ARG A . n A 1 199 GLU 199 196 196 GLU GLU A . n A 1 200 ILE 200 197 197 ILE ILE A . n A 1 201 ALA 201 198 198 ALA ALA A . n A 1 202 GLU 202 199 199 GLU GLU A . n A 1 203 ILE 203 200 200 ILE ILE A . n A 1 204 ASP 204 201 201 ASP ASP A . n A 1 205 LEU 205 202 202 LEU LEU A . n A 1 206 VAL 206 203 203 VAL VAL A . n A 1 207 TYR 207 204 204 TYR TYR A . n A 1 208 ARG 208 205 205 ARG ARG A . n A 1 209 THR 209 206 206 THR THR A . n A 1 210 GLU 210 207 207 GLU GLU A . n A 1 211 SER 211 208 208 SER SER A . n A 1 212 HIS 212 209 209 HIS HIS A . n A 1 213 TRP 213 210 210 TRP TRP A . n A 1 214 HIS 214 211 211 HIS HIS A . n A 1 215 ASP 215 212 212 ASP ASP A . n A 1 216 TRP 216 213 213 TRP TRP A . n A 1 217 LEU 217 214 214 LEU LEU A . n A 1 218 SER 218 215 215 SER SER A . n A 1 219 VAL 219 216 216 VAL VAL A . n A 1 220 GLN 220 217 217 GLN GLN A . n A 1 221 SER 221 218 218 SER SER A . n A 1 222 VAL 222 219 219 VAL VAL A . n A 1 223 THR 223 220 220 THR THR A . n A 1 224 GLU 224 221 221 GLU GLU A . n A 1 225 THR 225 222 222 THR THR A . n A 1 226 ASP 226 223 223 ASP ASP A . n A 1 227 ASN 227 224 224 ASN ASN A . n A 1 228 SER 228 225 225 SER SER A . n A 1 229 VAL 229 226 226 VAL VAL A . n A 1 230 LEU 230 227 227 LEU LEU A . n A 1 231 HIS 231 228 228 HIS HIS A . n A 1 232 ARG 232 229 229 ARG ARG A . n A 1 233 ILE 233 230 230 ILE ILE A . n A 1 234 SER 234 231 231 SER SER A . n A 1 235 GLN 235 232 232 GLN GLN A . n A 1 236 THR 236 233 233 THR THR A . n A 1 237 GLU 237 234 234 GLU GLU A . n A 1 238 SER 238 235 235 SER SER A . n A 1 239 GLY 239 236 236 GLY GLY A . n A 1 240 LYS 240 237 237 LYS LYS A . n A 1 241 ASP 241 238 238 ASP ASP A . n A 1 242 VAL 242 239 239 VAL VAL A . n A 1 243 LEU 243 240 240 LEU LEU A . n A 1 244 LEU 244 241 241 LEU LEU A . n A 1 245 ALA 245 242 242 ALA ALA A . n A 1 246 ARG 246 243 243 ARG ARG A . n A 1 247 SER 247 244 244 SER SER A . n A 1 248 ARG 248 245 245 ARG ARG A . n A 1 249 TRP 249 246 246 TRP TRP A . n A 1 250 ARG 250 247 247 ARG ARG A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 25 A MSE 22 ? MET SELENOMETHIONINE 3 A MSE 31 A MSE 28 ? MET SELENOMETHIONINE 4 A MSE 34 A MSE 31 ? MET SELENOMETHIONINE 5 A MSE 60 A MSE 57 ? MET SELENOMETHIONINE 6 A MSE 62 A MSE 59 ? MET SELENOMETHIONINE 7 A MSE 81 A MSE 78 ? MET SELENOMETHIONINE 8 A MSE 118 A MSE 115 ? MET SELENOMETHIONINE 9 A MSE 123 A MSE 120 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4520 ? 1 MORE -31 ? 1 'SSA (A^2)' 22450 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 155.9450000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2012-09-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 15.9602 9.4064 71.7498 0.0445 0.0729 0.0718 0.0074 0.0010 0.0199 0.2124 0.5834 2.7867 0.3118 -0.5120 -0.4832 0.0890 -0.0323 -0.0568 0.0027 0.0401 0.0155 0.1474 -0.1723 0.1324 'X-RAY DIFFRACTION' 2 ? refined 9.1106 11.0915 64.4679 0.0650 0.0602 0.0728 -0.0007 0.0026 0.0074 0.5443 0.1647 0.1551 -0.0532 -0.0660 -0.1021 0.0420 -0.0446 0.0026 0.0545 0.0653 -0.0035 0.0217 0.0400 0.0143 'X-RAY DIFFRACTION' 3 ? refined 5.7726 5.3732 57.6450 0.0567 0.0704 0.0451 0.0213 -0.0200 -0.0284 1.2135 0.6312 0.4670 -0.2507 0.0268 -0.5222 0.0154 -0.0172 0.0018 0.1495 0.0014 0.0052 -0.0244 0.0322 -0.0107 'X-RAY DIFFRACTION' 4 ? refined 16.6033 4.8393 63.1397 0.0324 0.0689 0.0641 -0.0092 -0.0095 -0.0046 0.4076 0.4121 0.8860 -0.3389 -0.1870 -0.1607 0.0039 -0.0585 0.0546 0.0592 0.0074 -0.0466 -0.0280 0.0694 0.0116 'X-RAY DIFFRACTION' 5 ? refined 25.6213 5.3760 69.6540 0.0315 0.0748 0.0798 0.0185 -0.0137 -0.0086 2.4643 0.1987 10.8633 0.3210 1.4209 -1.0679 -0.2120 -0.0631 0.2751 -0.0357 0.3014 0.0256 -0.0492 0.0380 0.3933 'X-RAY DIFFRACTION' 6 ? refined 15.2512 2.5147 60.9852 0.0743 0.0792 0.0525 0.0469 -0.0006 -0.0015 0.4511 0.7042 0.2465 -0.1215 -0.2821 0.2864 0.0221 -0.0386 0.0165 0.0513 -0.0103 0.0205 -0.0091 0.0022 -0.0254 'X-RAY DIFFRACTION' 7 ? refined -7.5570 9.2020 50.3893 0.0838 0.1116 0.1689 0.0118 -0.1035 0.0527 9.9365 7.4935 2.8226 2.3227 4.2519 -1.6465 0.5057 0.1740 -0.6797 -0.3424 -0.8648 0.6023 -0.3603 0.4017 -0.2415 'X-RAY DIFFRACTION' 8 ? refined 10.2890 12.6582 48.6222 0.1077 0.1492 0.0232 0.0053 0.0238 0.0439 3.8736 0.2799 0.1627 0.1719 -0.7795 -0.0639 0.0428 -0.0468 0.0040 0.4826 0.0337 -0.0623 -0.1520 0.0004 -0.0758 'X-RAY DIFFRACTION' 9 ? refined 15.6759 -3.0461 53.5568 0.1918 0.0818 0.0852 0.0902 0.0837 -0.0018 3.6171 5.9378 0.7228 3.4004 1.3740 1.5816 0.0105 -0.0435 0.0331 0.2555 -0.2002 -0.0470 -0.1505 0.1625 0.1354 'X-RAY DIFFRACTION' 10 ? refined -2.2614 -11.4234 65.2607 0.0441 0.2014 0.1292 -0.0757 -0.0140 0.0097 1.4458 2.5090 0.7459 -0.6869 -0.3077 -0.2036 0.0382 0.0246 -0.0629 0.1933 -0.2845 0.1992 -0.1218 0.1438 -0.3816 'X-RAY DIFFRACTION' 11 ? refined -0.2419 0.9197 69.9103 0.0542 0.0685 0.0453 -0.0203 -0.0250 0.0106 0.7583 3.9124 0.2429 -0.8487 -0.0078 -0.8360 0.0101 -0.0101 0.0000 0.0346 -0.0751 0.0691 -0.0352 0.0115 -0.0196 'X-RAY DIFFRACTION' 12 ? refined 9.5560 -10.6777 69.3720 0.0534 0.0156 0.1193 0.0123 0.0010 -0.0127 0.1331 1.1388 1.3126 0.3845 0.2352 0.5527 -0.0137 0.0389 -0.0252 0.0138 -0.0468 -0.1125 -0.0579 0.1258 -0.0036 'X-RAY DIFFRACTION' 13 ? refined -10.1349 2.1414 66.7911 0.0531 0.0489 0.0757 -0.0338 -0.0091 -0.0006 0.6704 8.6462 16.3077 -1.1673 -2.6334 -1.6907 0.1195 0.1972 -0.3167 0.0210 -0.0095 0.3986 -0.2794 -0.3431 -0.3163 'X-RAY DIFFRACTION' 14 ? refined 0.8388 -13.5054 66.1678 0.1677 0.0376 0.1299 -0.0473 -0.0071 -0.0408 1.9643 1.8145 0.1848 -0.2412 -0.4934 -0.2274 -0.1260 0.0724 0.0536 0.1822 -0.2354 0.0857 0.0308 0.0765 -0.0736 'X-RAY DIFFRACTION' 15 ? refined 4.0821 -10.4150 63.8874 0.1552 0.0246 0.1508 -0.0206 0.0380 -0.0367 5.2178 0.1784 1.1265 0.0886 1.1598 0.1166 -0.2055 -0.0417 0.2471 0.1549 -0.0628 0.0058 -0.0327 0.2247 -0.0699 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A -2 A 21 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 22 A 50 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 51 A 64 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 65 A 93 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 94 A 99 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 A 100 A 112 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 A 113 A 118 ? . . . . ? 'X-RAY DIFFRACTION' 8 8 A 119 A 136 ? . . . . ? 'X-RAY DIFFRACTION' 9 9 A 137 A 146 ? . . . . ? 'X-RAY DIFFRACTION' 10 10 A 147 A 165 ? . . . . ? 'X-RAY DIFFRACTION' 11 11 A 166 A 187 ? . . . . ? 'X-RAY DIFFRACTION' 12 12 A 188 A 206 ? . . . . ? 'X-RAY DIFFRACTION' 13 13 A 207 A 211 ? . . . . ? 'X-RAY DIFFRACTION' 14 14 A 212 A 233 ? . . . . ? 'X-RAY DIFFRACTION' 15 15 A 234 A 247 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.6.0117 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 4 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 6 HKL-3000 . ? ? ? ? phasing ? ? ? 7 MLPHARE . ? ? ? ? phasing ? ? ? 8 DM . ? ? ? ? phasing ? ? ? 9 SHELXDE . ? ? ? ? phasing ? ? ? 10 ARP/wARP . ? ? ? ? 'model building' ? ? ? 11 RESOLVE . ? ? ? ? phasing ? ? ? 12 Coot . ? ? ? ? 'model building' ? ? ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 HIS _pdbx_validate_rmsd_bond.auth_seq_id_1 211 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 HIS _pdbx_validate_rmsd_bond.auth_seq_id_2 211 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.412 _pdbx_validate_rmsd_bond.bond_target_value 1.354 _pdbx_validate_rmsd_bond.bond_deviation 0.058 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.009 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 247 ? ? CZ A ARG 247 ? ? NH1 A ARG 247 ? ? 123.46 120.30 3.16 0.50 N 2 1 NE A ARG 247 ? ? CZ A ARG 247 ? ? NH2 A ARG 247 ? ? 117.26 120.30 -3.04 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 85 ? ? -126.65 -164.46 2 1 ASP A 99 ? ? -39.43 -31.29 3 1 ARG A 205 ? ? -114.78 -97.61 4 1 HIS A 211 ? ? 81.72 -6.83 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'CHLORIDE ION' CL 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 301 301 GOL GOL A . C 2 GOL 1 302 302 GOL GOL A . D 3 CL 1 303 303 CL CL A . E 4 HOH 1 401 1 HOH HOH A . E 4 HOH 2 402 2 HOH HOH A . E 4 HOH 3 403 3 HOH HOH A . E 4 HOH 4 404 4 HOH HOH A . E 4 HOH 5 405 5 HOH HOH A . E 4 HOH 6 406 6 HOH HOH A . E 4 HOH 7 407 7 HOH HOH A . E 4 HOH 8 408 8 HOH HOH A . E 4 HOH 9 409 9 HOH HOH A . E 4 HOH 10 410 10 HOH HOH A . E 4 HOH 11 411 11 HOH HOH A . E 4 HOH 12 412 12 HOH HOH A . E 4 HOH 13 413 13 HOH HOH A . E 4 HOH 14 414 14 HOH HOH A . E 4 HOH 15 415 15 HOH HOH A . E 4 HOH 16 416 16 HOH HOH A . E 4 HOH 17 417 17 HOH HOH A . E 4 HOH 18 418 18 HOH HOH A . E 4 HOH 19 419 19 HOH HOH A . E 4 HOH 20 420 20 HOH HOH A . E 4 HOH 21 421 21 HOH HOH A . E 4 HOH 22 422 22 HOH HOH A . E 4 HOH 23 423 23 HOH HOH A . E 4 HOH 24 424 24 HOH HOH A . E 4 HOH 25 425 25 HOH HOH A . E 4 HOH 26 426 26 HOH HOH A . E 4 HOH 27 427 27 HOH HOH A . E 4 HOH 28 428 28 HOH HOH A . E 4 HOH 29 429 29 HOH HOH A . E 4 HOH 30 430 30 HOH HOH A . E 4 HOH 31 431 31 HOH HOH A . E 4 HOH 32 432 32 HOH HOH A . E 4 HOH 33 433 33 HOH HOH A . E 4 HOH 34 434 34 HOH HOH A . E 4 HOH 35 435 35 HOH HOH A . E 4 HOH 36 436 36 HOH HOH A . E 4 HOH 37 437 37 HOH HOH A . E 4 HOH 38 438 38 HOH HOH A . E 4 HOH 39 439 39 HOH HOH A . E 4 HOH 40 440 40 HOH HOH A . E 4 HOH 41 441 41 HOH HOH A . E 4 HOH 42 442 42 HOH HOH A . E 4 HOH 43 443 43 HOH HOH A . E 4 HOH 44 444 44 HOH HOH A . E 4 HOH 45 445 45 HOH HOH A . E 4 HOH 46 446 46 HOH HOH A . E 4 HOH 47 447 47 HOH HOH A . E 4 HOH 48 448 48 HOH HOH A . E 4 HOH 49 449 49 HOH HOH A . E 4 HOH 50 450 50 HOH HOH A . E 4 HOH 51 451 51 HOH HOH A . E 4 HOH 52 452 52 HOH HOH A . E 4 HOH 53 453 53 HOH HOH A . E 4 HOH 54 454 54 HOH HOH A . E 4 HOH 55 455 55 HOH HOH A . E 4 HOH 56 456 56 HOH HOH A . E 4 HOH 57 457 57 HOH HOH A . E 4 HOH 58 458 58 HOH HOH A . E 4 HOH 59 459 59 HOH HOH A . E 4 HOH 60 460 60 HOH HOH A . E 4 HOH 61 461 61 HOH HOH A . E 4 HOH 62 462 62 HOH HOH A . E 4 HOH 63 463 63 HOH HOH A . E 4 HOH 64 464 64 HOH HOH A . E 4 HOH 65 465 65 HOH HOH A . E 4 HOH 66 466 66 HOH HOH A . E 4 HOH 67 467 67 HOH HOH A . E 4 HOH 68 468 68 HOH HOH A . E 4 HOH 69 469 69 HOH HOH A . E 4 HOH 70 470 70 HOH HOH A . E 4 HOH 71 471 71 HOH HOH A . E 4 HOH 72 472 72 HOH HOH A . E 4 HOH 73 473 73 HOH HOH A . E 4 HOH 74 474 74 HOH HOH A . E 4 HOH 75 475 75 HOH HOH A . E 4 HOH 76 476 76 HOH HOH A . E 4 HOH 77 477 77 HOH HOH A . E 4 HOH 78 478 78 HOH HOH A . E 4 HOH 79 479 79 HOH HOH A . E 4 HOH 80 480 80 HOH HOH A . E 4 HOH 81 481 81 HOH HOH A . E 4 HOH 82 482 82 HOH HOH A . E 4 HOH 83 483 83 HOH HOH A . E 4 HOH 84 484 84 HOH HOH A . E 4 HOH 85 485 85 HOH HOH A . E 4 HOH 86 486 86 HOH HOH A . E 4 HOH 87 487 87 HOH HOH A . E 4 HOH 88 488 88 HOH HOH A . E 4 HOH 89 489 89 HOH HOH A . E 4 HOH 90 490 90 HOH HOH A . E 4 HOH 91 491 91 HOH HOH A . E 4 HOH 92 492 92 HOH HOH A . E 4 HOH 93 493 93 HOH HOH A . E 4 HOH 94 494 94 HOH HOH A . E 4 HOH 95 495 95 HOH HOH A . E 4 HOH 96 496 96 HOH HOH A . E 4 HOH 97 497 97 HOH HOH A . E 4 HOH 98 498 98 HOH HOH A . E 4 HOH 99 499 99 HOH HOH A . E 4 HOH 100 500 100 HOH HOH A . E 4 HOH 101 501 101 HOH HOH A . E 4 HOH 102 502 102 HOH HOH A . E 4 HOH 103 503 103 HOH HOH A . E 4 HOH 104 504 104 HOH HOH A . E 4 HOH 105 505 105 HOH HOH A . E 4 HOH 106 506 106 HOH HOH A . E 4 HOH 107 507 107 HOH HOH A . E 4 HOH 108 508 108 HOH HOH A . E 4 HOH 109 509 109 HOH HOH A . E 4 HOH 110 510 110 HOH HOH A . E 4 HOH 111 511 111 HOH HOH A . E 4 HOH 112 512 112 HOH HOH A . E 4 HOH 113 513 113 HOH HOH A . E 4 HOH 114 514 114 HOH HOH A . E 4 HOH 115 515 115 HOH HOH A . E 4 HOH 116 516 116 HOH HOH A . E 4 HOH 117 517 117 HOH HOH A . E 4 HOH 118 518 118 HOH HOH A . E 4 HOH 119 519 119 HOH HOH A . E 4 HOH 120 520 120 HOH HOH A . E 4 HOH 121 521 121 HOH HOH A . E 4 HOH 122 522 122 HOH HOH A . E 4 HOH 123 523 123 HOH HOH A . E 4 HOH 124 524 124 HOH HOH A . E 4 HOH 125 525 125 HOH HOH A . E 4 HOH 126 526 126 HOH HOH A . E 4 HOH 127 527 127 HOH HOH A . E 4 HOH 128 528 128 HOH HOH A . E 4 HOH 129 529 129 HOH HOH A . E 4 HOH 130 530 130 HOH HOH A . E 4 HOH 131 531 131 HOH HOH A . E 4 HOH 132 532 132 HOH HOH A . E 4 HOH 133 533 133 HOH HOH A . E 4 HOH 134 534 134 HOH HOH A . E 4 HOH 135 535 135 HOH HOH A . E 4 HOH 136 536 136 HOH HOH A . E 4 HOH 137 537 137 HOH HOH A . E 4 HOH 138 538 138 HOH HOH A . E 4 HOH 139 539 139 HOH HOH A . E 4 HOH 140 540 140 HOH HOH A . E 4 HOH 141 541 141 HOH HOH A . E 4 HOH 142 542 142 HOH HOH A . E 4 HOH 143 543 143 HOH HOH A . E 4 HOH 144 544 144 HOH HOH A . E 4 HOH 145 545 145 HOH HOH A . E 4 HOH 146 546 146 HOH HOH A . E 4 HOH 147 547 147 HOH HOH A . E 4 HOH 148 548 148 HOH HOH A . E 4 HOH 149 549 149 HOH HOH A . E 4 HOH 150 550 150 HOH HOH A . E 4 HOH 151 551 151 HOH HOH A . E 4 HOH 152 552 152 HOH HOH A . E 4 HOH 153 553 153 HOH HOH A . E 4 HOH 154 554 154 HOH HOH A . E 4 HOH 155 555 155 HOH HOH A . E 4 HOH 156 556 156 HOH HOH A . E 4 HOH 157 557 157 HOH HOH A . E 4 HOH 158 558 158 HOH HOH A . E 4 HOH 159 559 159 HOH HOH A . E 4 HOH 160 560 160 HOH HOH A . E 4 HOH 161 561 161 HOH HOH A . E 4 HOH 162 562 162 HOH HOH A . E 4 HOH 163 563 163 HOH HOH A . E 4 HOH 164 564 164 HOH HOH A . E 4 HOH 165 565 165 HOH HOH A . E 4 HOH 166 566 166 HOH HOH A . E 4 HOH 167 567 167 HOH HOH A . E 4 HOH 168 568 168 HOH HOH A . E 4 HOH 169 569 169 HOH HOH A . E 4 HOH 170 570 170 HOH HOH A . E 4 HOH 171 571 171 HOH HOH A . E 4 HOH 172 572 172 HOH HOH A . E 4 HOH 173 573 173 HOH HOH A . E 4 HOH 174 574 174 HOH HOH A . E 4 HOH 175 575 175 HOH HOH A . E 4 HOH 176 576 176 HOH HOH A . E 4 HOH 177 577 177 HOH HOH A . E 4 HOH 178 578 178 HOH HOH A . E 4 HOH 179 579 179 HOH HOH A . E 4 HOH 180 580 180 HOH HOH A . E 4 HOH 181 581 181 HOH HOH A . E 4 HOH 182 582 182 HOH HOH A . E 4 HOH 183 583 183 HOH HOH A . E 4 HOH 184 584 184 HOH HOH A . E 4 HOH 185 585 185 HOH HOH A . E 4 HOH 186 586 186 HOH HOH A . E 4 HOH 187 587 187 HOH HOH A . E 4 HOH 188 588 188 HOH HOH A . E 4 HOH 189 589 189 HOH HOH A . E 4 HOH 190 590 190 HOH HOH A . E 4 HOH 191 591 191 HOH HOH A . E 4 HOH 192 592 192 HOH HOH A . E 4 HOH 193 593 193 HOH HOH A . E 4 HOH 194 594 194 HOH HOH A . E 4 HOH 195 595 195 HOH HOH A . E 4 HOH 196 596 196 HOH HOH A . E 4 HOH 197 597 197 HOH HOH A . E 4 HOH 198 598 198 HOH HOH A . E 4 HOH 199 599 199 HOH HOH A . E 4 HOH 200 600 200 HOH HOH A . E 4 HOH 201 601 201 HOH HOH A . E 4 HOH 202 602 202 HOH HOH A . E 4 HOH 203 603 203 HOH HOH A . E 4 HOH 204 604 204 HOH HOH A . E 4 HOH 205 605 205 HOH HOH A . #