HEADER LIGASE/PEPTIDE 25-JUL-12 4GAO TITLE DCNL COMPLEX WITH N-TERMINALLY ACETYLATED NEDD8 E2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DCN1-LIKE PROTEIN 2; COMPND 3 CHAIN: A, B, D, G; COMPND 4 SYNONYM: DCUN1 DOMAIN-CONTAINING PROTEIN 2, DEFECTIVE IN CULLIN COMPND 5 NEDDYLATION PROTEIN 1-LIKE PROTEIN 2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NEDD8-CONJUGATING ENZYME UBC12; COMPND 9 CHAIN: C, E, F, H; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCUN1D2, C13ORF17, DCUN1L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS E3 LIGASE, LIGASE-PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.K.MONDA,D.C.SCOTT,D.J.MILLER,J.W.HARPER,E.J.BENNETT,B.A.SCHULMAN REVDAT 3 30-JAN-13 4GAO 1 JRNL REVDAT 2 19-DEC-12 4GAO 1 JRNL REVDAT 1 28-NOV-12 4GAO 0 JRNL AUTH J.K.MONDA,D.C.SCOTT,D.J.MILLER,J.LYDEARD,D.KING,J.W.HARPER, JRNL AUTH 2 E.J.BENNETT,B.A.SCHULMAN JRNL TITL STRUCTURAL CONSERVATION OF DISTINCTIVE N-TERMINAL JRNL TITL 2 ACETYLATION-DEPENDENT INTERACTIONS ACROSS A FAMILY OF JRNL TITL 3 MAMMALIAN NEDD8 LIGATION ENZYMES. JRNL REF STRUCTURE V. 21 42 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23201271 JRNL DOI 10.1016/J.STR.2012.10.013 REMARK 2 REMARK 2 RESOLUTION. 3.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 12366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 643 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 743 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6297 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : 2.34000 REMARK 3 B33 (A**2) : -1.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.711 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.595 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 77.659 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.863 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.783 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6445 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8731 ; 0.951 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 795 ; 4.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 297 ;36.499 ;25.017 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1024 ;17.120 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.888 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 951 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4936 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4016 ; 0.552 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6354 ; 1.030 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2429 ; 0.725 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2377 ; 1.334 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 60 A 249 4 REMARK 3 1 D 62 D 249 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1445 ; 0.28 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1445 ; 2.82 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B G REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 60 B 251 4 REMARK 3 1 G 60 G 251 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 1425 ; 0.30 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 1425 ; 1.80 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 8 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 252 REMARK 3 RESIDUE RANGE : B 60 B 251 REMARK 3 RESIDUE RANGE : C 1 C 10 REMARK 3 RESIDUE RANGE : D 62 D 249 REMARK 3 RESIDUE RANGE : E 1 E 10 REMARK 3 RESIDUE RANGE : F 1 F 11 REMARK 3 RESIDUE RANGE : G 60 G 252 REMARK 3 RESIDUE RANGE : H 1 H 10 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7702 42.8478 -1.6495 REMARK 3 T TENSOR REMARK 3 T11: 0.0317 T22: 0.1246 REMARK 3 T33: 0.0022 T12: -0.0373 REMARK 3 T13: -0.0114 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.0989 L22: 0.8711 REMARK 3 L33: 0.2126 L12: 0.0350 REMARK 3 L13: 0.0987 L23: 0.3252 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0365 S13: -0.0100 REMARK 3 S21: 0.0848 S22: -0.0051 S23: -0.0015 REMARK 3 S31: 0.0138 S32: -0.0368 S33: 0.0051 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-12. REMARK 100 THE RCSB ID CODE IS RCSB073948. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, SIDE BOUNCE REMARK 200 HORIZONTAL OFFSET SILICON 220 REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12366 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.280 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG2000 MME, 0.1M NABR, 3% REMARK 280 SORBITOL, PH 7.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 95.07550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 253 REMARK 465 GLY A 254 REMARK 465 LYS A 255 REMARK 465 ARG A 256 REMARK 465 SER A 257 REMARK 465 LEU A 258 REMARK 465 PHE A 259 REMARK 465 THR B 252 REMARK 465 GLY B 253 REMARK 465 GLY B 254 REMARK 465 LYS B 255 REMARK 465 ARG B 256 REMARK 465 SER B 257 REMARK 465 LEU B 258 REMARK 465 PHE B 259 REMARK 465 LYS C 11 REMARK 465 LYS C 12 REMARK 465 GLY D 60 REMARK 465 SER D 61 REMARK 465 VAL D 250 REMARK 465 VAL D 251 REMARK 465 THR D 252 REMARK 465 GLY D 253 REMARK 465 GLY D 254 REMARK 465 LYS D 255 REMARK 465 ARG D 256 REMARK 465 SER D 257 REMARK 465 LEU D 258 REMARK 465 PHE D 259 REMARK 465 LYS E 11 REMARK 465 LYS E 12 REMARK 465 LYS F 12 REMARK 465 GLY G 253 REMARK 465 GLY G 254 REMARK 465 LYS G 255 REMARK 465 ARG G 256 REMARK 465 SER G 257 REMARK 465 LEU G 258 REMARK 465 PHE G 259 REMARK 465 LYS H 11 REMARK 465 LYS H 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 76 CG CD OE1 NE2 REMARK 470 SER A 94 OG REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 ARG A 248 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 250 CG1 CG2 REMARK 470 THR A 252 OG1 CG2 REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 ARG B 67 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 ARG B 143 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 146 CG CD OE1 NE2 REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 LYS B 153 CG CD CE NZ REMARK 470 LYS B 171 CG CD CE NZ REMARK 470 ARG B 189 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 204 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 205 CG CD CE NZ REMARK 470 ARG B 206 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 226 CG OD1 OD2 REMARK 470 GLU B 233 CG CD OE1 OE2 REMARK 470 PHE C 5 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER C 6 OG REMARK 470 LEU C 7 CG CD1 CD2 REMARK 470 LYS C 8 CG CD CE NZ REMARK 470 GLN C 9 CG CD OE1 NE2 REMARK 470 GLN C 10 CG CD OE1 NE2 REMARK 470 LYS D 62 CG CD CE NZ REMARK 470 LYS D 64 CG CD CE NZ REMARK 470 ARG D 67 CG CD NE CZ NH1 NH2 REMARK 470 SER D 94 OG REMARK 470 ARG D 143 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 149 CG CD CE NZ REMARK 470 LYS D 153 CG CD CE NZ REMARK 470 ARG D 206 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 233 CG CD OE1 OE2 REMARK 470 ARG D 248 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 3 CG CD CE NZ REMARK 470 LEU E 7 CG CD1 CD2 REMARK 470 LYS E 8 CG CD CE NZ REMARK 470 GLN E 9 CG CD OE1 NE2 REMARK 470 GLN E 10 CG CD OE1 NE2 REMARK 470 LYS F 3 CG CD CE NZ REMARK 470 PHE F 5 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER F 6 OG REMARK 470 LEU F 7 CG CD1 CD2 REMARK 470 LYS F 8 CG CD CE NZ REMARK 470 GLN F 9 CG CD OE1 NE2 REMARK 470 GLN F 10 CG CD OE1 NE2 REMARK 470 LYS F 11 CG CD CE NZ REMARK 470 LYS G 62 CG CD CE NZ REMARK 470 LYS G 63 CG CD CE NZ REMARK 470 LYS G 64 CG CD CE NZ REMARK 470 ARG G 67 CG CD NE CZ NH1 NH2 REMARK 470 ARG G 143 CG CD NE CZ NH1 NH2 REMARK 470 LYS G 153 CG CD CE NZ REMARK 470 LYS G 171 CG CD CE NZ REMARK 470 LYS G 205 CG CD CE NZ REMARK 470 ARG G 206 CG CD NE CZ NH1 NH2 REMARK 470 TYR G 230 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU G 233 CG CD OE1 OE2 REMARK 470 GLU G 245 CG CD OE1 OE2 REMARK 470 ARG G 248 CG CD NE CZ NH1 NH2 REMARK 470 VAL G 250 CG1 CG2 REMARK 470 VAL G 251 CG1 CG2 REMARK 470 THR G 252 OG1 CG2 REMARK 470 LYS H 3 CG CD CE NZ REMARK 470 SER H 6 OG REMARK 470 LEU H 7 CG CD1 CD2 REMARK 470 LYS H 8 CG CD CE NZ REMARK 470 GLN H 9 CG CD OE1 NE2 REMARK 470 GLN H 10 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 77 103.16 -163.92 REMARK 500 GLU A 233 -72.56 -84.28 REMARK 500 HIS B 204 52.97 -143.41 REMARK 500 GLU B 233 38.65 -77.53 REMARK 500 ASP D 77 96.51 -163.42 REMARK 500 GLU D 147 6.61 -68.52 REMARK 500 PRO G 97 -19.50 -49.75 REMARK 500 GLU G 147 -19.45 -49.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GBA RELATED DB: PDB DBREF 4GAO A 62 259 UNP Q6PH85 DCNL2_HUMAN 62 259 DBREF 4GAO B 62 259 UNP Q6PH85 DCNL2_HUMAN 62 259 DBREF 4GAO C 1 12 UNP P61081 UBC12_HUMAN 1 12 DBREF 4GAO D 62 259 UNP Q6PH85 DCNL2_HUMAN 62 259 DBREF 4GAO E 1 12 UNP P61081 UBC12_HUMAN 1 12 DBREF 4GAO F 1 12 UNP P61081 UBC12_HUMAN 1 12 DBREF 4GAO G 62 259 UNP Q6PH85 DCNL2_HUMAN 62 259 DBREF 4GAO H 1 12 UNP P61081 UBC12_HUMAN 1 12 SEQADV 4GAO GLY A 60 UNP Q6PH85 EXPRESSION TAG SEQADV 4GAO SER A 61 UNP Q6PH85 EXPRESSION TAG SEQADV 4GAO GLY B 60 UNP Q6PH85 EXPRESSION TAG SEQADV 4GAO SER B 61 UNP Q6PH85 EXPRESSION TAG SEQADV 4GAO AME C 1 UNP P61081 MET 1 ACETYLATION SEQADV 4GAO GLY D 60 UNP Q6PH85 EXPRESSION TAG SEQADV 4GAO SER D 61 UNP Q6PH85 EXPRESSION TAG SEQADV 4GAO AME E 1 UNP P61081 MET 1 ACETYLATION SEQADV 4GAO AME F 1 UNP P61081 MET 1 ACETYLATION SEQADV 4GAO GLY G 60 UNP Q6PH85 EXPRESSION TAG SEQADV 4GAO SER G 61 UNP Q6PH85 EXPRESSION TAG SEQADV 4GAO AME H 1 UNP P61081 MET 1 ACETYLATION SEQRES 1 A 200 GLY SER LYS LYS LYS LEU GLU ARG LEU TYR GLY ARG TYR SEQRES 2 A 200 LYS ASP PRO GLN ASP GLU ASN LYS ILE GLY VAL ASP GLY SEQRES 3 A 200 ILE GLN GLN PHE CYS ASP ASP LEU SER LEU ASP PRO ALA SEQRES 4 A 200 SER ILE SER VAL LEU VAL ILE ALA TRP LYS PHE ARG ALA SEQRES 5 A 200 ALA THR GLN CYS GLU PHE SER ARG LYS GLU PHE LEU ASP SEQRES 6 A 200 GLY MET THR GLU LEU GLY CYS ASP SER MET GLU LYS LEU SEQRES 7 A 200 LYS ALA LEU LEU PRO ARG LEU GLU GLN GLU LEU LYS ASP SEQRES 8 A 200 THR ALA LYS PHE LYS ASP PHE TYR GLN PHE THR PHE THR SEQRES 9 A 200 PHE ALA LYS ASN PRO GLY GLN LYS GLY LEU ASP LEU GLU SEQRES 10 A 200 MET ALA VAL ALA TYR TRP LYS LEU VAL LEU SER GLY ARG SEQRES 11 A 200 PHE LYS PHE LEU ASP LEU TRP ASN THR PHE LEU MET GLU SEQRES 12 A 200 HIS HIS LYS ARG SER ILE PRO ARG ASP THR TRP ASN LEU SEQRES 13 A 200 LEU LEU ASP PHE GLY ASN MET ILE ALA ASP ASP MET SER SEQRES 14 A 200 ASN TYR ASP GLU GLU GLY ALA TRP PRO VAL LEU ILE ASP SEQRES 15 A 200 ASP PHE VAL GLU TYR ALA ARG PRO VAL VAL THR GLY GLY SEQRES 16 A 200 LYS ARG SER LEU PHE SEQRES 1 B 200 GLY SER LYS LYS LYS LEU GLU ARG LEU TYR GLY ARG TYR SEQRES 2 B 200 LYS ASP PRO GLN ASP GLU ASN LYS ILE GLY VAL ASP GLY SEQRES 3 B 200 ILE GLN GLN PHE CYS ASP ASP LEU SER LEU ASP PRO ALA SEQRES 4 B 200 SER ILE SER VAL LEU VAL ILE ALA TRP LYS PHE ARG ALA SEQRES 5 B 200 ALA THR GLN CYS GLU PHE SER ARG LYS GLU PHE LEU ASP SEQRES 6 B 200 GLY MET THR GLU LEU GLY CYS ASP SER MET GLU LYS LEU SEQRES 7 B 200 LYS ALA LEU LEU PRO ARG LEU GLU GLN GLU LEU LYS ASP SEQRES 8 B 200 THR ALA LYS PHE LYS ASP PHE TYR GLN PHE THR PHE THR SEQRES 9 B 200 PHE ALA LYS ASN PRO GLY GLN LYS GLY LEU ASP LEU GLU SEQRES 10 B 200 MET ALA VAL ALA TYR TRP LYS LEU VAL LEU SER GLY ARG SEQRES 11 B 200 PHE LYS PHE LEU ASP LEU TRP ASN THR PHE LEU MET GLU SEQRES 12 B 200 HIS HIS LYS ARG SER ILE PRO ARG ASP THR TRP ASN LEU SEQRES 13 B 200 LEU LEU ASP PHE GLY ASN MET ILE ALA ASP ASP MET SER SEQRES 14 B 200 ASN TYR ASP GLU GLU GLY ALA TRP PRO VAL LEU ILE ASP SEQRES 15 B 200 ASP PHE VAL GLU TYR ALA ARG PRO VAL VAL THR GLY GLY SEQRES 16 B 200 LYS ARG SER LEU PHE SEQRES 1 C 12 AME ILE LYS LEU PHE SER LEU LYS GLN GLN LYS LYS SEQRES 1 D 200 GLY SER LYS LYS LYS LEU GLU ARG LEU TYR GLY ARG TYR SEQRES 2 D 200 LYS ASP PRO GLN ASP GLU ASN LYS ILE GLY VAL ASP GLY SEQRES 3 D 200 ILE GLN GLN PHE CYS ASP ASP LEU SER LEU ASP PRO ALA SEQRES 4 D 200 SER ILE SER VAL LEU VAL ILE ALA TRP LYS PHE ARG ALA SEQRES 5 D 200 ALA THR GLN CYS GLU PHE SER ARG LYS GLU PHE LEU ASP SEQRES 6 D 200 GLY MET THR GLU LEU GLY CYS ASP SER MET GLU LYS LEU SEQRES 7 D 200 LYS ALA LEU LEU PRO ARG LEU GLU GLN GLU LEU LYS ASP SEQRES 8 D 200 THR ALA LYS PHE LYS ASP PHE TYR GLN PHE THR PHE THR SEQRES 9 D 200 PHE ALA LYS ASN PRO GLY GLN LYS GLY LEU ASP LEU GLU SEQRES 10 D 200 MET ALA VAL ALA TYR TRP LYS LEU VAL LEU SER GLY ARG SEQRES 11 D 200 PHE LYS PHE LEU ASP LEU TRP ASN THR PHE LEU MET GLU SEQRES 12 D 200 HIS HIS LYS ARG SER ILE PRO ARG ASP THR TRP ASN LEU SEQRES 13 D 200 LEU LEU ASP PHE GLY ASN MET ILE ALA ASP ASP MET SER SEQRES 14 D 200 ASN TYR ASP GLU GLU GLY ALA TRP PRO VAL LEU ILE ASP SEQRES 15 D 200 ASP PHE VAL GLU TYR ALA ARG PRO VAL VAL THR GLY GLY SEQRES 16 D 200 LYS ARG SER LEU PHE SEQRES 1 E 12 AME ILE LYS LEU PHE SER LEU LYS GLN GLN LYS LYS SEQRES 1 F 12 AME ILE LYS LEU PHE SER LEU LYS GLN GLN LYS LYS SEQRES 1 G 200 GLY SER LYS LYS LYS LEU GLU ARG LEU TYR GLY ARG TYR SEQRES 2 G 200 LYS ASP PRO GLN ASP GLU ASN LYS ILE GLY VAL ASP GLY SEQRES 3 G 200 ILE GLN GLN PHE CYS ASP ASP LEU SER LEU ASP PRO ALA SEQRES 4 G 200 SER ILE SER VAL LEU VAL ILE ALA TRP LYS PHE ARG ALA SEQRES 5 G 200 ALA THR GLN CYS GLU PHE SER ARG LYS GLU PHE LEU ASP SEQRES 6 G 200 GLY MET THR GLU LEU GLY CYS ASP SER MET GLU LYS LEU SEQRES 7 G 200 LYS ALA LEU LEU PRO ARG LEU GLU GLN GLU LEU LYS ASP SEQRES 8 G 200 THR ALA LYS PHE LYS ASP PHE TYR GLN PHE THR PHE THR SEQRES 9 G 200 PHE ALA LYS ASN PRO GLY GLN LYS GLY LEU ASP LEU GLU SEQRES 10 G 200 MET ALA VAL ALA TYR TRP LYS LEU VAL LEU SER GLY ARG SEQRES 11 G 200 PHE LYS PHE LEU ASP LEU TRP ASN THR PHE LEU MET GLU SEQRES 12 G 200 HIS HIS LYS ARG SER ILE PRO ARG ASP THR TRP ASN LEU SEQRES 13 G 200 LEU LEU ASP PHE GLY ASN MET ILE ALA ASP ASP MET SER SEQRES 14 G 200 ASN TYR ASP GLU GLU GLY ALA TRP PRO VAL LEU ILE ASP SEQRES 15 G 200 ASP PHE VAL GLU TYR ALA ARG PRO VAL VAL THR GLY GLY SEQRES 16 G 200 LYS ARG SER LEU PHE SEQRES 1 H 12 AME ILE LYS LEU PHE SER LEU LYS GLN GLN LYS LYS HET AME C 1 11 HET AME E 1 11 HET AME F 1 11 HET AME H 1 11 HET BR A 301 1 HET BR B 301 1 HETNAM AME N-ACETYLMETHIONINE HETNAM BR BROMIDE ION FORMUL 3 AME 4(C7 H13 N O3 S) FORMUL 9 BR 2(BR 1-) HELIX 1 1 SER A 61 ARG A 71 1 11 HELIX 2 2 GLY A 82 LEU A 93 1 12 HELIX 3 3 SER A 99 ARG A 110 1 12 HELIX 4 4 ARG A 119 LEU A 129 1 11 HELIX 5 5 SER A 133 GLU A 147 1 15 HELIX 6 6 ASP A 150 LYS A 166 1 17 HELIX 7 7 LEU A 175 LEU A 186 1 12 HELIX 8 8 PHE A 192 HIS A 203 1 12 HELIX 9 9 PRO A 209 ILE A 223 1 15 HELIX 10 10 PRO A 237 ARG A 248 1 12 HELIX 11 11 PRO A 249 THR A 252 5 4 HELIX 12 12 SER B 61 ARG B 71 1 11 HELIX 13 13 GLY B 82 SER B 94 1 13 HELIX 14 14 SER B 99 ARG B 110 1 12 HELIX 15 15 ARG B 119 LEU B 129 1 11 HELIX 16 16 SER B 133 GLU B 147 1 15 HELIX 17 17 ASP B 150 LYS B 166 1 17 HELIX 18 18 ASP B 174 LEU B 186 1 13 HELIX 19 19 PHE B 192 HIS B 204 1 13 HELIX 20 20 PRO B 209 ILE B 223 1 15 HELIX 21 21 PRO B 237 VAL B 251 1 15 HELIX 22 22 LYS C 3 GLN C 10 1 8 HELIX 23 23 LYS D 63 ARG D 71 1 9 HELIX 24 24 GLY D 82 LEU D 93 1 12 HELIX 25 25 SER D 99 ARG D 110 1 12 HELIX 26 26 ARG D 119 GLY D 130 1 12 HELIX 27 27 SER D 133 GLU D 147 1 15 HELIX 28 28 ASP D 150 LYS D 166 1 17 HELIX 29 29 LEU D 175 LEU D 186 1 12 HELIX 30 30 PHE D 192 HIS D 203 1 12 HELIX 31 31 PRO D 209 ILE D 223 1 15 HELIX 32 32 PRO D 237 ARG D 248 1 12 HELIX 33 33 LYS E 3 GLN E 10 1 8 HELIX 34 34 LYS F 3 GLN F 10 1 8 HELIX 35 35 SER G 61 TYR G 72 1 12 HELIX 36 36 GLY G 82 LEU G 93 1 12 HELIX 37 37 SER G 99 ARG G 110 1 12 HELIX 38 38 ARG G 119 GLY G 130 1 12 HELIX 39 39 SER G 133 GLN G 146 1 14 HELIX 40 40 GLU G 147 LYS G 149 5 3 HELIX 41 41 ASP G 150 LYS G 166 1 17 HELIX 42 42 ASP G 174 LEU G 186 1 13 HELIX 43 43 PHE G 192 HIS G 204 1 13 HELIX 44 44 PRO G 209 ILE G 223 1 15 HELIX 45 45 PRO G 237 ARG G 248 1 12 HELIX 46 46 PRO G 249 VAL G 251 5 3 HELIX 47 47 LYS H 3 GLN H 10 1 8 SHEET 1 A 3 LYS A 73 ASP A 74 0 SHEET 2 A 3 ASP A 77 ILE A 81 -1 O LYS A 80 N ASP A 74 SHEET 3 A 3 PHE A 117 SER A 118 -1 O PHE A 117 N ILE A 81 SHEET 1 B 2 LEU A 173 ASP A 174 0 SHEET 2 B 2 SER A 207 ILE A 208 -1 O ILE A 208 N LEU A 173 SHEET 1 C 2 LYS B 80 ILE B 81 0 SHEET 2 C 2 PHE B 117 SER B 118 -1 O PHE B 117 N ILE B 81 SHEET 1 D 2 LYS D 80 ILE D 81 0 SHEET 2 D 2 PHE D 117 SER D 118 -1 O PHE D 117 N ILE D 81 SHEET 1 E 2 LEU D 173 ASP D 174 0 SHEET 2 E 2 SER D 207 ILE D 208 -1 O ILE D 208 N LEU D 173 SHEET 1 F 3 LYS G 73 ASP G 74 0 SHEET 2 F 3 ASP G 77 ILE G 81 -1 O LYS G 80 N ASP G 74 SHEET 3 F 3 PHE G 117 SER G 118 -1 O PHE G 117 N ILE G 81 LINK C AME C 1 N ILE C 2 1555 1555 1.29 LINK C AME E 1 N ILE E 2 1555 1555 1.33 LINK C AME F 1 N ILE F 2 1555 1555 1.34 LINK C AME H 1 N ILE H 2 1555 1555 1.33 SITE 1 AC1 4 SER A 118 LYS A 120 SER G 118 LYS G 120 SITE 1 AC2 2 SER B 118 SER D 118 CRYST1 48.567 190.151 49.072 90.00 101.75 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020590 0.000000 0.004283 0.00000 SCALE2 0.000000 0.005259 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020814 0.00000