data_4GB5 # _entry.id 4GB5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4GB5 RCSB RCSB073964 WWPDB D_1000073964 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id APC103577 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4GB5 _pdbx_database_status.recvd_initial_deposition_date 2012-07-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Michalska, K.' 1 'Chhor, G.' 2 'Endres, M.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal structure of Kfla4162 protein from Kribbella flavida (CASP Target)' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Michalska, K.' 1 primary 'Chhor, G.' 2 primary 'Endres, M.' 3 primary 'Joachimiak, A.' 4 primary 'Midwest Center for Structural Genomics (MCSG)' 5 # _cell.entry_id 4GB5 _cell.length_a 57.948 _cell.length_b 57.948 _cell.length_c 81.605 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GB5 _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 17390.771 1 ? ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 3 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 3 ? ? ? ? 4 water nat water 18.015 125 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)DAETDRAEIIELFGRYADIADLKEFTDLPRRVHTDPLTIDFESVTG(MSE)PP(MSE)TVPLSDYGAALRAS FGAFSATHHAITGHVVTIDSDRATIHAHVRAEHWLPAEVAGDGPDRWLVVGFYDNEAVRTADGWRLSSVKLTASYQENAH LARAAAAGQAG ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMDAETDRAEIIELFGRYADIADLKEFTDLPRRVHTDPLTIDFESVTGMPPMTVPLSDYGAALRASFGAFSATHHAIT GHVVTIDSDRATIHAHVRAEHWLPAEVAGDGPDRWLVVGFYDNEAVRTADGWRLSSVKLTASYQENAHLARAAAAGQAG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC103577 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ASP n 1 6 ALA n 1 7 GLU n 1 8 THR n 1 9 ASP n 1 10 ARG n 1 11 ALA n 1 12 GLU n 1 13 ILE n 1 14 ILE n 1 15 GLU n 1 16 LEU n 1 17 PHE n 1 18 GLY n 1 19 ARG n 1 20 TYR n 1 21 ALA n 1 22 ASP n 1 23 ILE n 1 24 ALA n 1 25 ASP n 1 26 LEU n 1 27 LYS n 1 28 GLU n 1 29 PHE n 1 30 THR n 1 31 ASP n 1 32 LEU n 1 33 PRO n 1 34 ARG n 1 35 ARG n 1 36 VAL n 1 37 HIS n 1 38 THR n 1 39 ASP n 1 40 PRO n 1 41 LEU n 1 42 THR n 1 43 ILE n 1 44 ASP n 1 45 PHE n 1 46 GLU n 1 47 SER n 1 48 VAL n 1 49 THR n 1 50 GLY n 1 51 MSE n 1 52 PRO n 1 53 PRO n 1 54 MSE n 1 55 THR n 1 56 VAL n 1 57 PRO n 1 58 LEU n 1 59 SER n 1 60 ASP n 1 61 TYR n 1 62 GLY n 1 63 ALA n 1 64 ALA n 1 65 LEU n 1 66 ARG n 1 67 ALA n 1 68 SER n 1 69 PHE n 1 70 GLY n 1 71 ALA n 1 72 PHE n 1 73 SER n 1 74 ALA n 1 75 THR n 1 76 HIS n 1 77 HIS n 1 78 ALA n 1 79 ILE n 1 80 THR n 1 81 GLY n 1 82 HIS n 1 83 VAL n 1 84 VAL n 1 85 THR n 1 86 ILE n 1 87 ASP n 1 88 SER n 1 89 ASP n 1 90 ARG n 1 91 ALA n 1 92 THR n 1 93 ILE n 1 94 HIS n 1 95 ALA n 1 96 HIS n 1 97 VAL n 1 98 ARG n 1 99 ALA n 1 100 GLU n 1 101 HIS n 1 102 TRP n 1 103 LEU n 1 104 PRO n 1 105 ALA n 1 106 GLU n 1 107 VAL n 1 108 ALA n 1 109 GLY n 1 110 ASP n 1 111 GLY n 1 112 PRO n 1 113 ASP n 1 114 ARG n 1 115 TRP n 1 116 LEU n 1 117 VAL n 1 118 VAL n 1 119 GLY n 1 120 PHE n 1 121 TYR n 1 122 ASP n 1 123 ASN n 1 124 GLU n 1 125 ALA n 1 126 VAL n 1 127 ARG n 1 128 THR n 1 129 ALA n 1 130 ASP n 1 131 GLY n 1 132 TRP n 1 133 ARG n 1 134 LEU n 1 135 SER n 1 136 SER n 1 137 VAL n 1 138 LYS n 1 139 LEU n 1 140 THR n 1 141 ALA n 1 142 SER n 1 143 TYR n 1 144 GLN n 1 145 GLU n 1 146 ASN n 1 147 ALA n 1 148 HIS n 1 149 LEU n 1 150 ALA n 1 151 ARG n 1 152 ALA n 1 153 ALA n 1 154 ALA n 1 155 ALA n 1 156 GLY n 1 157 GLN n 1 158 ALA n 1 159 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Kfla_4162 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DSM 17836' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Kribbella flavida' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 479435 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG68 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D2PTS5_KRIFD _struct_ref.pdbx_db_accession D2PTS5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDAETDRAEIIELFGRYADIADLKEFTDLPRRVHTDPLTIDFESVTGMPPMTVPLSDYGAALRASFGAFSATHHAITGHV VTIDSDRATIHAHVRAEHWLPAEVAGDGPDRWLVVGFYDNEAVRTADGWRLSSVKLTASYQENAHLARAAAAGQAG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4GB5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 159 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession D2PTS5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 156 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 156 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4GB5 SER A 1 ? UNP D2PTS5 ? ? 'EXPRESSION TAG' -2 1 1 4GB5 ASN A 2 ? UNP D2PTS5 ? ? 'EXPRESSION TAG' -1 2 1 4GB5 ALA A 3 ? UNP D2PTS5 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4GB5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_percent_sol 45.92 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details '0.2 M NaCl, 0.1 M NaH2PO4/K2HPO4, pH 6.2, 50% PEG200, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date 2012-06-28 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9791 # _reflns.entry_id 4GB5 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.55 _reflns.number_obs 22441 _reflns.number_all 22603 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.3 _reflns.B_iso_Wilson_estimate 18.0 _reflns.pdbx_redundancy 7.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.58 _reflns_shell.percent_possible_all 98.6 _reflns_shell.Rmerge_I_obs 0.930 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 6.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1110 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4GB5 _refine.ls_number_reflns_obs 22433 _refine.ls_number_reflns_all 22433 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.974 _refine.ls_d_res_high 1.550 _refine.ls_percent_reflns_obs 99.37 _refine.ls_R_factor_obs 0.1458 _refine.ls_R_factor_all 0.1458 _refine.ls_R_factor_R_work 0.1441 _refine.ls_R_factor_R_free 0.1798 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.07 _refine.ls_number_reflns_R_free 1138 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method Rfree _refine.details 'HYDROGEN ATOMS HAVE BEEN ADDED AT THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.13 _refine.pdbx_overall_phase_error 16.09 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1152 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 125 _refine_hist.number_atoms_total 1312 _refine_hist.d_res_high 1.550 _refine_hist.d_res_low 28.974 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.013 ? ? 1259 ? 'X-RAY DIFFRACTION' f_angle_d 1.391 ? ? 1712 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 13.298 ? ? 457 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.086 ? ? 185 ? 'X-RAY DIFFRACTION' f_plane_restr 0.007 ? ? 224 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.5504 1.6210 2646 0.1786 99.00 0.1946 . . 136 . . . . 'X-RAY DIFFRACTION' . 1.6210 1.7064 2626 0.1578 99.00 0.1743 . . 158 . . . . 'X-RAY DIFFRACTION' . 1.7064 1.8133 2646 0.1456 99.00 0.2027 . . 138 . . . . 'X-RAY DIFFRACTION' . 1.8133 1.9533 2650 0.1317 99.00 0.1661 . . 144 . . . . 'X-RAY DIFFRACTION' . 1.9533 2.1498 2648 0.1205 100.00 0.1631 . . 148 . . . . 'X-RAY DIFFRACTION' . 2.1498 2.4607 2665 0.1232 100.00 0.1681 . . 146 . . . . 'X-RAY DIFFRACTION' . 2.4607 3.0997 2686 0.1423 100.00 0.1843 . . 140 . . . . 'X-RAY DIFFRACTION' . 3.0997 28.9790 2728 0.1574 100.00 0.1872 . . 128 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4GB5 _struct.title 'Crystal structure of Kfla4162 protein from Kribbella flavida' _struct.pdbx_descriptor 'Uncharacterized protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GB5 _struct_keywords.pdbx_keywords 'Structural Genomics, Unknown Function' _struct_keywords.text 'Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, SnoaL-like domain, Unknown Function' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details 'THE AUTHOR STATES THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 5 ? LEU A 26 ? ASP A 2 LEU A 23 1 ? 22 HELX_P HELX_P2 2 ASP A 31 ? VAL A 36 ? ASP A 28 VAL A 33 1 ? 6 HELX_P HELX_P3 3 PHE A 45 ? GLY A 50 ? PHE A 42 GLY A 47 1 ? 6 HELX_P HELX_P4 4 PRO A 57 ? GLY A 70 ? PRO A 54 GLY A 67 1 ? 14 HELX_P HELX_P5 5 PRO A 104 ? GLY A 109 ? PRO A 101 GLY A 106 1 ? 6 HELX_P HELX_P6 6 ALA A 147 ? ALA A 152 ? ALA A 144 ALA A 149 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 50 C ? ? ? 1_555 A MSE 51 N ? ? A GLY 47 A MSE 48 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale ? ? A MSE 51 C ? ? ? 1_555 A PRO 52 N ? ? A MSE 48 A PRO 49 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A PRO 53 C ? ? ? 1_555 A MSE 54 N ? ? A PRO 50 A MSE 51 1_555 ? ? ? ? ? ? ? 1.322 ? covale4 covale ? ? A MSE 54 C ? ? ? 1_555 A THR 55 N ? ? A MSE 51 A THR 52 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 39 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 40 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.51 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MSE A 54 ? VAL A 56 ? MSE A 51 VAL A 53 A 2 HIS A 37 ? ASP A 44 ? HIS A 34 ASP A 41 A 3 GLY A 131 ? GLU A 145 ? GLY A 128 GLU A 142 A 4 ARG A 114 ? THR A 128 ? ARG A 111 THR A 125 A 5 ARG A 90 ? TRP A 102 ? ARG A 87 TRP A 99 A 6 ALA A 74 ? ASP A 87 ? ALA A 71 ASP A 84 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O MSE A 54 ? O MSE A 51 N ILE A 43 ? N ILE A 40 A 2 3 N ASP A 44 ? N ASP A 41 O LEU A 139 ? O LEU A 136 A 3 4 O ARG A 133 ? O ARG A 130 N VAL A 126 ? N VAL A 123 A 4 5 O VAL A 117 ? O VAL A 114 N ALA A 99 ? N ALA A 96 A 5 6 O ARG A 90 ? O ARG A 87 N ASP A 87 ? N ASP A 84 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 12 'BINDING SITE FOR RESIDUE PO4 A 201' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE PGE A 202' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PGE A 203' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE PGE A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 ARG A 98 ? ARG A 95 . ? 2_665 ? 2 AC1 12 ARG A 98 ? ARG A 95 . ? 3_565 ? 3 AC1 12 ARG A 98 ? ARG A 95 . ? 1_555 ? 4 AC1 12 ARG A 114 ? ARG A 111 . ? 1_555 ? 5 AC1 12 ARG A 114 ? ARG A 111 . ? 3_565 ? 6 AC1 12 ARG A 114 ? ARG A 111 . ? 2_665 ? 7 AC1 12 HOH F . ? HOH A 324 . ? 2_665 ? 8 AC1 12 HOH F . ? HOH A 324 . ? 3_565 ? 9 AC1 12 HOH F . ? HOH A 324 . ? 1_555 ? 10 AC1 12 HOH F . ? HOH A 370 . ? 2_665 ? 11 AC1 12 HOH F . ? HOH A 370 . ? 3_565 ? 12 AC1 12 HOH F . ? HOH A 370 . ? 1_555 ? 13 AC2 5 THR A 85 ? THR A 82 . ? 1_555 ? 14 AC2 5 THR A 92 ? THR A 89 . ? 1_555 ? 15 AC2 5 HIS A 148 ? HIS A 145 . ? 4_664 ? 16 AC2 5 HOH F . ? HOH A 407 . ? 1_555 ? 17 AC2 5 HOH F . ? HOH A 408 . ? 1_555 ? 18 AC3 4 ASP A 122 ? ASP A 119 . ? 1_555 ? 19 AC3 4 LYS A 138 ? LYS A 135 . ? 1_555 ? 20 AC3 4 THR A 140 ? THR A 137 . ? 1_555 ? 21 AC3 4 HOH F . ? HOH A 385 . ? 1_555 ? 22 AC4 3 THR A 55 ? THR A 52 . ? 1_555 ? 23 AC4 3 PRO A 57 ? PRO A 54 . ? 1_555 ? 24 AC4 3 HOH F . ? HOH A 382 . ? 1_555 ? # _database_PDB_matrix.entry_id 4GB5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4GB5 _atom_sites.fract_transf_matrix[1][1] 0.017257 _atom_sites.fract_transf_matrix[1][2] 0.009963 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019926 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012254 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 ASP 5 2 2 ASP ASP A . n A 1 6 ALA 6 3 3 ALA ALA A . n A 1 7 GLU 7 4 4 GLU GLU A . n A 1 8 THR 8 5 5 THR THR A . n A 1 9 ASP 9 6 6 ASP ASP A . n A 1 10 ARG 10 7 7 ARG ARG A . n A 1 11 ALA 11 8 8 ALA ALA A . n A 1 12 GLU 12 9 9 GLU GLU A . n A 1 13 ILE 13 10 10 ILE ILE A . n A 1 14 ILE 14 11 11 ILE ILE A . n A 1 15 GLU 15 12 12 GLU GLU A . n A 1 16 LEU 16 13 13 LEU LEU A . n A 1 17 PHE 17 14 14 PHE PHE A . n A 1 18 GLY 18 15 15 GLY GLY A . n A 1 19 ARG 19 16 16 ARG ARG A . n A 1 20 TYR 20 17 17 TYR TYR A . n A 1 21 ALA 21 18 18 ALA ALA A . n A 1 22 ASP 22 19 19 ASP ASP A . n A 1 23 ILE 23 20 20 ILE ILE A . n A 1 24 ALA 24 21 21 ALA ALA A . n A 1 25 ASP 25 22 22 ASP ASP A . n A 1 26 LEU 26 23 23 LEU LEU A . n A 1 27 LYS 27 24 24 LYS LYS A . n A 1 28 GLU 28 25 25 GLU GLU A . n A 1 29 PHE 29 26 26 PHE PHE A . n A 1 30 THR 30 27 27 THR THR A . n A 1 31 ASP 31 28 28 ASP ASP A . n A 1 32 LEU 32 29 29 LEU LEU A . n A 1 33 PRO 33 30 30 PRO PRO A . n A 1 34 ARG 34 31 31 ARG ARG A . n A 1 35 ARG 35 32 32 ARG ARG A . n A 1 36 VAL 36 33 33 VAL VAL A . n A 1 37 HIS 37 34 34 HIS HIS A . n A 1 38 THR 38 35 35 THR THR A . n A 1 39 ASP 39 36 36 ASP ASP A . n A 1 40 PRO 40 37 37 PRO PRO A . n A 1 41 LEU 41 38 38 LEU LEU A . n A 1 42 THR 42 39 39 THR THR A . n A 1 43 ILE 43 40 40 ILE ILE A . n A 1 44 ASP 44 41 41 ASP ASP A . n A 1 45 PHE 45 42 42 PHE PHE A . n A 1 46 GLU 46 43 43 GLU GLU A . n A 1 47 SER 47 44 44 SER SER A . n A 1 48 VAL 48 45 45 VAL VAL A . n A 1 49 THR 49 46 46 THR THR A . n A 1 50 GLY 50 47 47 GLY GLY A . n A 1 51 MSE 51 48 48 MSE MSE A . n A 1 52 PRO 52 49 49 PRO PRO A . n A 1 53 PRO 53 50 50 PRO PRO A . n A 1 54 MSE 54 51 51 MSE MSE A . n A 1 55 THR 55 52 52 THR THR A . n A 1 56 VAL 56 53 53 VAL VAL A . n A 1 57 PRO 57 54 54 PRO PRO A . n A 1 58 LEU 58 55 55 LEU LEU A . n A 1 59 SER 59 56 56 SER SER A . n A 1 60 ASP 60 57 57 ASP ASP A . n A 1 61 TYR 61 58 58 TYR TYR A . n A 1 62 GLY 62 59 59 GLY GLY A . n A 1 63 ALA 63 60 60 ALA ALA A . n A 1 64 ALA 64 61 61 ALA ALA A . n A 1 65 LEU 65 62 62 LEU LEU A . n A 1 66 ARG 66 63 63 ARG ARG A . n A 1 67 ALA 67 64 64 ALA ALA A . n A 1 68 SER 68 65 65 SER SER A . n A 1 69 PHE 69 66 66 PHE PHE A . n A 1 70 GLY 70 67 67 GLY GLY A . n A 1 71 ALA 71 68 68 ALA ALA A . n A 1 72 PHE 72 69 69 PHE PHE A . n A 1 73 SER 73 70 70 SER SER A . n A 1 74 ALA 74 71 71 ALA ALA A . n A 1 75 THR 75 72 72 THR THR A . n A 1 76 HIS 76 73 73 HIS HIS A . n A 1 77 HIS 77 74 74 HIS HIS A . n A 1 78 ALA 78 75 75 ALA ALA A . n A 1 79 ILE 79 76 76 ILE ILE A . n A 1 80 THR 80 77 77 THR THR A . n A 1 81 GLY 81 78 78 GLY GLY A . n A 1 82 HIS 82 79 79 HIS HIS A . n A 1 83 VAL 83 80 80 VAL VAL A . n A 1 84 VAL 84 81 81 VAL VAL A . n A 1 85 THR 85 82 82 THR THR A . n A 1 86 ILE 86 83 83 ILE ILE A . n A 1 87 ASP 87 84 84 ASP ASP A . n A 1 88 SER 88 85 85 SER SER A . n A 1 89 ASP 89 86 86 ASP ASP A . n A 1 90 ARG 90 87 87 ARG ARG A . n A 1 91 ALA 91 88 88 ALA ALA A . n A 1 92 THR 92 89 89 THR THR A . n A 1 93 ILE 93 90 90 ILE ILE A . n A 1 94 HIS 94 91 91 HIS HIS A . n A 1 95 ALA 95 92 92 ALA ALA A . n A 1 96 HIS 96 93 93 HIS HIS A . n A 1 97 VAL 97 94 94 VAL VAL A . n A 1 98 ARG 98 95 95 ARG ARG A . n A 1 99 ALA 99 96 96 ALA ALA A . n A 1 100 GLU 100 97 97 GLU GLU A . n A 1 101 HIS 101 98 98 HIS HIS A . n A 1 102 TRP 102 99 99 TRP TRP A . n A 1 103 LEU 103 100 100 LEU LEU A . n A 1 104 PRO 104 101 101 PRO PRO A . n A 1 105 ALA 105 102 102 ALA ALA A . n A 1 106 GLU 106 103 103 GLU GLU A . n A 1 107 VAL 107 104 104 VAL VAL A . n A 1 108 ALA 108 105 105 ALA ALA A . n A 1 109 GLY 109 106 106 GLY GLY A . n A 1 110 ASP 110 107 107 ASP ASP A . n A 1 111 GLY 111 108 108 GLY GLY A . n A 1 112 PRO 112 109 109 PRO PRO A . n A 1 113 ASP 113 110 110 ASP ASP A . n A 1 114 ARG 114 111 111 ARG ARG A . n A 1 115 TRP 115 112 112 TRP TRP A . n A 1 116 LEU 116 113 113 LEU LEU A . n A 1 117 VAL 117 114 114 VAL VAL A . n A 1 118 VAL 118 115 115 VAL VAL A . n A 1 119 GLY 119 116 116 GLY GLY A . n A 1 120 PHE 120 117 117 PHE PHE A . n A 1 121 TYR 121 118 118 TYR TYR A . n A 1 122 ASP 122 119 119 ASP ASP A . n A 1 123 ASN 123 120 120 ASN ASN A . n A 1 124 GLU 124 121 121 GLU GLU A . n A 1 125 ALA 125 122 122 ALA ALA A . n A 1 126 VAL 126 123 123 VAL VAL A . n A 1 127 ARG 127 124 124 ARG ARG A . n A 1 128 THR 128 125 125 THR THR A . n A 1 129 ALA 129 126 126 ALA ALA A . n A 1 130 ASP 130 127 127 ASP ASP A . n A 1 131 GLY 131 128 128 GLY GLY A . n A 1 132 TRP 132 129 129 TRP TRP A . n A 1 133 ARG 133 130 130 ARG ARG A . n A 1 134 LEU 134 131 131 LEU LEU A . n A 1 135 SER 135 132 132 SER SER A . n A 1 136 SER 136 133 133 SER SER A . n A 1 137 VAL 137 134 134 VAL VAL A . n A 1 138 LYS 138 135 135 LYS LYS A . n A 1 139 LEU 139 136 136 LEU LEU A . n A 1 140 THR 140 137 137 THR THR A . n A 1 141 ALA 141 138 138 ALA ALA A . n A 1 142 SER 142 139 139 SER SER A . n A 1 143 TYR 143 140 140 TYR TYR A . n A 1 144 GLN 144 141 141 GLN GLN A . n A 1 145 GLU 145 142 142 GLU GLU A . n A 1 146 ASN 146 143 143 ASN ASN A . n A 1 147 ALA 147 144 144 ALA ALA A . n A 1 148 HIS 148 145 145 HIS HIS A . n A 1 149 LEU 149 146 146 LEU LEU A . n A 1 150 ALA 150 147 147 ALA ALA A . n A 1 151 ARG 151 148 148 ARG ARG A . n A 1 152 ALA 152 149 149 ALA ALA A . n A 1 153 ALA 153 150 ? ? ? A . n A 1 154 ALA 154 151 ? ? ? A . n A 1 155 ALA 155 152 ? ? ? A . n A 1 156 GLY 156 153 ? ? ? A . n A 1 157 GLN 157 154 ? ? ? A . n A 1 158 ALA 158 155 ? ? ? A . n A 1 159 GLY 159 156 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 51 A MSE 48 ? MET SELENOMETHIONINE 2 A MSE 54 A MSE 51 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6850 ? 1 MORE -31 ? 1 'SSA (A^2)' 20440 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 28.9740000000 0.8660254038 -0.5000000000 0.0000000000 50.1844400985 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -28.9740000000 -0.8660254038 -0.5000000000 0.0000000000 50.1844400985 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 340 ? F HOH . 2 1 A HOH 352 ? F HOH . 3 1 A HOH 401 ? F HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2012-09-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 2.4317 26.9852 2.5831 0.1753 0.1519 0.0828 0.0026 0.0092 -0.0149 2.6564 3.0001 0.7916 0.2892 0.4828 1.4981 -0.0255 0.6115 0.1086 -0.8615 -0.0036 0.0193 -0.2806 0.0102 -0.1280 'X-RAY DIFFRACTION' 2 ? refined -2.2273 17.0235 17.1668 0.0799 0.0591 0.1106 -0.0018 0.0006 -0.0157 0.2701 0.1902 1.4506 -0.1507 0.2075 -0.2298 0.0268 0.0201 -0.1715 -0.0291 -0.0053 -0.1272 0.1734 -0.0886 0.0931 'X-RAY DIFFRACTION' 3 ? refined 11.5895 14.0916 18.8140 0.2224 0.0808 0.1240 0.0446 0.0170 0.0189 2.3524 2.1508 2.1836 0.8143 1.3953 1.5137 0.0707 -0.2702 -0.3433 0.4458 0.0464 -0.2665 0.5812 -0.0575 0.1237 'X-RAY DIFFRACTION' 4 ? refined 4.9183 9.3796 21.8485 0.2165 0.1025 0.1409 0.0695 0.0322 -0.0133 0.3221 0.0593 0.4233 -0.0589 0.1378 0.1081 -0.1330 -0.1611 0.0134 0.1291 0.1101 -0.0508 0.0744 -0.0825 0.0232 'X-RAY DIFFRACTION' 5 ? refined 5.3496 23.1237 19.7447 0.0452 0.0238 0.0517 0.0000 0.0042 0.0051 1.4205 1.3570 0.2049 0.1238 0.0378 -0.1634 -0.0007 -0.0671 -0.1708 -0.0446 0.0068 -0.0877 0.0731 0.0258 0.0268 'X-RAY DIFFRACTION' 6 ? refined 10.2789 23.7514 32.2943 0.1495 0.1489 0.1756 0.0217 -0.0175 0.0441 3.2368 0.9320 1.2321 0.2479 -0.9452 0.6181 -0.0734 -0.5864 -0.4653 0.2271 -0.0983 -0.0545 0.3970 0.2393 -0.1605 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resid 2:12)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain A and resid 13:30)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain A and resid 31:51)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain A and resid 52:67)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(chain A and resid 68:134)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(chain A and resid 135:149)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 SHELX 'model building' . ? 2 MLPHARE phasing . ? 3 DM 'model building' . ? 4 ARP/wARP 'model building' . ? 5 Coot 'model building' . ? 6 PHENIX refinement '(phenix.refine: dev_1096)' ? 7 HKL-3000 'data reduction' . ? 8 HKL-3000 'data scaling' . ? 9 SHELX phasing . ? 10 DM phasing . ? 11 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 85 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 54.88 _pdbx_validate_torsion.psi -105.97 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A ALA 150 ? A ALA 153 6 1 Y 1 A ALA 151 ? A ALA 154 7 1 Y 1 A ALA 152 ? A ALA 155 8 1 Y 1 A GLY 153 ? A GLY 156 9 1 Y 1 A GLN 154 ? A GLN 157 10 1 Y 1 A ALA 155 ? A ALA 158 11 1 Y 1 A GLY 156 ? A GLY 159 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 'TRIETHYLENE GLYCOL' PGE 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 201 1 PO4 PO4 A . C 3 PGE 1 202 1 PGE PGE A . D 3 PGE 1 203 1 PGE PGE A . E 3 PGE 1 204 1 PGE PGE A . F 4 HOH 1 301 1 HOH HOH A . F 4 HOH 2 302 2 HOH HOH A . F 4 HOH 3 303 3 HOH HOH A . F 4 HOH 4 304 4 HOH HOH A . F 4 HOH 5 305 5 HOH HOH A . F 4 HOH 6 306 6 HOH HOH A . F 4 HOH 7 307 7 HOH HOH A . F 4 HOH 8 308 8 HOH HOH A . F 4 HOH 9 309 9 HOH HOH A . F 4 HOH 10 310 10 HOH HOH A . F 4 HOH 11 311 11 HOH HOH A . F 4 HOH 12 312 12 HOH HOH A . F 4 HOH 13 313 13 HOH HOH A . F 4 HOH 14 314 14 HOH HOH A . F 4 HOH 15 315 15 HOH HOH A . F 4 HOH 16 316 16 HOH HOH A . F 4 HOH 17 317 17 HOH HOH A . F 4 HOH 18 318 18 HOH HOH A . F 4 HOH 19 319 19 HOH HOH A . F 4 HOH 20 320 20 HOH HOH A . F 4 HOH 21 321 21 HOH HOH A . F 4 HOH 22 322 22 HOH HOH A . F 4 HOH 23 323 23 HOH HOH A . F 4 HOH 24 324 24 HOH HOH A . F 4 HOH 25 325 25 HOH HOH A . F 4 HOH 26 326 26 HOH HOH A . F 4 HOH 27 327 27 HOH HOH A . F 4 HOH 28 328 28 HOH HOH A . F 4 HOH 29 329 29 HOH HOH A . F 4 HOH 30 330 30 HOH HOH A . F 4 HOH 31 331 31 HOH HOH A . F 4 HOH 32 332 32 HOH HOH A . F 4 HOH 33 333 33 HOH HOH A . F 4 HOH 34 334 34 HOH HOH A . F 4 HOH 35 335 35 HOH HOH A . F 4 HOH 36 336 36 HOH HOH A . F 4 HOH 37 337 37 HOH HOH A . F 4 HOH 38 338 38 HOH HOH A . F 4 HOH 39 339 39 HOH HOH A . F 4 HOH 40 340 40 HOH HOH A . F 4 HOH 41 341 41 HOH HOH A . F 4 HOH 42 342 42 HOH HOH A . F 4 HOH 43 343 43 HOH HOH A . F 4 HOH 44 344 44 HOH HOH A . F 4 HOH 45 345 45 HOH HOH A . F 4 HOH 46 346 46 HOH HOH A . F 4 HOH 47 347 47 HOH HOH A . F 4 HOH 48 348 48 HOH HOH A . F 4 HOH 49 349 49 HOH HOH A . F 4 HOH 50 350 50 HOH HOH A . F 4 HOH 51 351 51 HOH HOH A . F 4 HOH 52 352 52 HOH HOH A . F 4 HOH 53 353 53 HOH HOH A . F 4 HOH 54 354 54 HOH HOH A . F 4 HOH 55 355 55 HOH HOH A . F 4 HOH 56 356 56 HOH HOH A . F 4 HOH 57 357 57 HOH HOH A . F 4 HOH 58 358 58 HOH HOH A . F 4 HOH 59 359 59 HOH HOH A . F 4 HOH 60 360 60 HOH HOH A . F 4 HOH 61 361 61 HOH HOH A . F 4 HOH 62 362 62 HOH HOH A . F 4 HOH 63 363 63 HOH HOH A . F 4 HOH 64 364 64 HOH HOH A . F 4 HOH 65 365 65 HOH HOH A . F 4 HOH 66 366 66 HOH HOH A . F 4 HOH 67 367 67 HOH HOH A . F 4 HOH 68 368 68 HOH HOH A . F 4 HOH 69 369 69 HOH HOH A . F 4 HOH 70 370 70 HOH HOH A . F 4 HOH 71 371 71 HOH HOH A . F 4 HOH 72 372 72 HOH HOH A . F 4 HOH 73 373 73 HOH HOH A . F 4 HOH 74 374 74 HOH HOH A . F 4 HOH 75 375 75 HOH HOH A . F 4 HOH 76 376 76 HOH HOH A . F 4 HOH 77 377 77 HOH HOH A . F 4 HOH 78 378 78 HOH HOH A . F 4 HOH 79 379 79 HOH HOH A . F 4 HOH 80 380 80 HOH HOH A . F 4 HOH 81 381 81 HOH HOH A . F 4 HOH 82 382 82 HOH HOH A . F 4 HOH 83 383 83 HOH HOH A . F 4 HOH 84 384 84 HOH HOH A . F 4 HOH 85 385 85 HOH HOH A . F 4 HOH 86 386 86 HOH HOH A . F 4 HOH 87 387 87 HOH HOH A . F 4 HOH 88 388 88 HOH HOH A . F 4 HOH 89 389 89 HOH HOH A . F 4 HOH 90 390 90 HOH HOH A . F 4 HOH 91 391 91 HOH HOH A . F 4 HOH 92 392 92 HOH HOH A . F 4 HOH 93 393 93 HOH HOH A . F 4 HOH 94 394 94 HOH HOH A . F 4 HOH 95 395 95 HOH HOH A . F 4 HOH 96 396 96 HOH HOH A . F 4 HOH 97 397 97 HOH HOH A . F 4 HOH 98 398 98 HOH HOH A . F 4 HOH 99 399 99 HOH HOH A . F 4 HOH 100 400 100 HOH HOH A . F 4 HOH 101 401 101 HOH HOH A . F 4 HOH 102 402 102 HOH HOH A . F 4 HOH 103 403 103 HOH HOH A . F 4 HOH 104 404 104 HOH HOH A . F 4 HOH 105 405 105 HOH HOH A . F 4 HOH 106 406 106 HOH HOH A . F 4 HOH 107 407 107 HOH HOH A . F 4 HOH 108 408 108 HOH HOH A . F 4 HOH 109 409 109 HOH HOH A . F 4 HOH 110 410 110 HOH HOH A . F 4 HOH 111 411 111 HOH HOH A . F 4 HOH 112 412 112 HOH HOH A . F 4 HOH 113 413 113 HOH HOH A . F 4 HOH 114 414 114 HOH HOH A . F 4 HOH 115 415 115 HOH HOH A . F 4 HOH 116 416 116 HOH HOH A . F 4 HOH 117 417 117 HOH HOH A . F 4 HOH 118 418 118 HOH HOH A . F 4 HOH 119 419 119 HOH HOH A . F 4 HOH 120 420 120 HOH HOH A . F 4 HOH 121 421 121 HOH HOH A . F 4 HOH 122 422 122 HOH HOH A . F 4 HOH 123 423 123 HOH HOH A . F 4 HOH 124 424 124 HOH HOH A . F 4 HOH 125 425 125 HOH HOH A . #