HEADER OXIDOREDUCTASE 28-JUL-12 4GBU TITLE OYE1-W116A IN COMPLEX WITH AROMATIC PRODUCT OF S-CARVONE DISMUTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH DEHYDROGENASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OLD YELLOW ENZYME 1; COMPND 5 EC: 1.6.99.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES PASTORIANUS; SOURCE 3 ORGANISM_COMMON: LAGER YEAST; SOURCE 4 ORGANISM_TAXID: 27292; SOURCE 5 GENE: OYE1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ALPHA/BETA BARREL, ENENONE REDUCTASE, ALKENE REDUCTASE, NADPH KEYWDS 2 OXIDOREDUCTASE, CARVONE, ENENATIOSELECTIVITY, BINDING MODE, KEYWDS 3 DISMUTATION, LIGAND, TIM BARREL, NAD(P)H OXIDOREDUCTASE; ALKENE KEYWDS 4 REDUCTASE, NAD(P)H, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.POMPEU,J.D.STEWART REVDAT 3 13-SEP-23 4GBU 1 REMARK SEQADV SHEET LINK REVDAT 2 09-OCT-13 4GBU 1 JRNL REMARK REVDAT 1 29-AUG-12 4GBU 0 JRNL AUTH Y.A.POMPEU,B.SULLIVAN,J.D.STEWART JRNL TITL X‑RAY CRYSTALLOGRAPHY REVEALS HOW SUBTLE CHANGES JRNL TITL 2 CONTROL THE ORIENTATION OF SUBSTRATE BINDING IN AN ALKENE JRNL TITL 3 REDUCTASE JRNL REF ACS CATALYSIS V. 3 2376 2013 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/CS400622E REMARK 2 REMARK 2 RESOLUTION. 1.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 141257 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.102 REMARK 3 R VALUE (WORKING SET) : 0.100 REMARK 3 FREE R VALUE : 0.121 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 14125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.0404 - 3.6587 0.97 4444 494 0.1382 0.1400 REMARK 3 2 3.6587 - 2.9065 0.99 4346 483 0.1200 0.1271 REMARK 3 3 2.9065 - 2.5398 0.99 4290 477 0.1064 0.1216 REMARK 3 4 2.5398 - 2.3079 0.99 4300 477 0.0920 0.1117 REMARK 3 5 2.3079 - 2.1426 1.00 4260 474 0.0828 0.1022 REMARK 3 6 2.1426 - 2.0164 1.00 4288 475 0.0835 0.0982 REMARK 3 7 2.0164 - 1.9155 1.00 4264 473 0.0806 0.1075 REMARK 3 8 1.9155 - 1.8322 1.00 4268 475 0.0771 0.1100 REMARK 3 9 1.8322 - 1.7617 1.00 4256 473 0.0744 0.0989 REMARK 3 10 1.7617 - 1.7009 1.00 4228 469 0.0702 0.0944 REMARK 3 11 1.7009 - 1.6478 1.00 4236 471 0.0676 0.0931 REMARK 3 12 1.6478 - 1.6007 1.00 4256 473 0.0635 0.0910 REMARK 3 13 1.6007 - 1.5585 1.00 4257 473 0.0662 0.0977 REMARK 3 14 1.5585 - 1.5205 1.00 4192 466 0.0662 0.1039 REMARK 3 15 1.5205 - 1.4860 1.00 4242 471 0.0768 0.1078 REMARK 3 16 1.4860 - 1.4544 1.00 4231 470 0.0887 0.1179 REMARK 3 17 1.4544 - 1.4253 1.00 4196 466 0.0861 0.1199 REMARK 3 18 1.4253 - 1.3984 1.00 4243 471 0.0879 0.1276 REMARK 3 19 1.3984 - 1.3734 1.00 4195 467 0.0907 0.1205 REMARK 3 20 1.3734 - 1.3501 1.00 4222 470 0.0929 0.1278 REMARK 3 21 1.3501 - 1.3284 1.00 4204 466 0.1017 0.1352 REMARK 3 22 1.3284 - 1.3079 1.00 4210 468 0.1101 0.1482 REMARK 3 23 1.3079 - 1.2887 1.00 4223 469 0.1199 0.1612 REMARK 3 24 1.2887 - 1.2705 1.00 4170 464 0.1303 0.1542 REMARK 3 25 1.2705 - 1.2534 1.00 4217 469 0.1370 0.1608 REMARK 3 26 1.2534 - 1.2371 1.00 4215 467 0.1358 0.1674 REMARK 3 27 1.2371 - 1.2216 1.00 4144 461 0.1382 0.1666 REMARK 3 28 1.2216 - 1.2069 1.00 4221 470 0.1421 0.1719 REMARK 3 29 1.2069 - 1.1929 1.00 4146 460 0.1523 0.1943 REMARK 3 30 1.1929 - 1.1795 0.99 4168 463 0.1708 0.2012 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 9.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3472 REMARK 3 ANGLE : 1.475 4716 REMARK 3 CHIRALITY : 0.132 482 REMARK 3 PLANARITY : 0.010 617 REMARK 3 DIHEDRAL : 17.478 1341 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000073988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 999641 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.180 REMARK 200 RESOLUTION RANGE LOW (A) : 24.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : 0.55400 REMARK 200 FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3RND REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG400, 0.2M MGCL2, 0.1M NA HEPES, REMARK 280 PH 8.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.40650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.56050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.56050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.10975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.56050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.56050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 10.70325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.56050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.56050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.10975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.56050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.56050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 10.70325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 21.40650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -21.40650 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 407 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1048 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1089 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1139 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1152 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1154 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 167 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 156 58.96 -140.17 REMARK 500 TYR A 382 -59.63 -129.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 405 REMARK 610 1PE A 406 REMARK 610 1PE A 410 REMARK 610 1PE A 411 REMARK 610 1PE A 415 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 1PE A 410 OH3 REMARK 620 2 1PE A 410 OH5 115.1 REMARK 620 3 1PE A 410 OH4 60.2 56.6 REMARK 620 4 HOH A 915 O 137.4 64.9 97.1 REMARK 620 5 HOH A1130 O 104.3 133.9 161.7 101.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 409 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 1PE A 405 OH4 REMARK 620 2 1PE A 405 OH5 56.5 REMARK 620 3 1PE A 405 OH6 112.4 57.3 REMARK 620 4 1PE A 405 OH3 59.2 107.4 135.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 416 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 1PE A 406 OH3 REMARK 620 2 1PE A 406 OH4 66.0 REMARK 620 3 1PE A 406 OH6 122.3 103.9 REMARK 620 4 1PE A 406 OH5 113.5 56.0 54.1 REMARK 620 5 HOH A 611 O 126.9 118.3 108.3 108.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1151 O REMARK 620 2 HOH A1152 O 91.9 REMARK 620 3 HOH A1153 O 88.7 85.4 REMARK 620 4 HOH A1154 O 88.4 179.3 93.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 414 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 1PE A 415 OH3 REMARK 620 2 1PE A 415 OH4 57.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0WV A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RND RELATED DB: PDB REMARK 900 RELATED ID: 3TX9 RELATED DB: PDB REMARK 900 RELATED ID: 3TXZ RELATED DB: PDB REMARK 900 RELATED ID: 4GE8 RELATED DB: PDB REMARK 900 RELATED ID: 4GWE RELATED DB: PDB REMARK 900 RELATED ID: 4GXM RELATED DB: PDB REMARK 900 RELATED ID: 4H4I RELATED DB: PDB REMARK 900 RELATED ID: 4H6K RELATED DB: PDB REMARK 900 RELATED ID: 4K7V RELATED DB: PDB REMARK 900 RELATED ID: 4K7Y RELATED DB: PDB REMARK 900 RELATED ID: 4K8E RELATED DB: PDB REMARK 900 RELATED ID: 4K8H RELATED DB: PDB DBREF 4GBU A 0 399 UNP Q02899 OYE1_SACPS 1 400 SEQADV 4GBU ALA A 116 UNP Q02899 TRP 117 ENGINEERED MUTATION SEQRES 1 A 400 MET SER PHE VAL LYS ASP PHE LYS PRO GLN ALA LEU GLY SEQRES 2 A 400 ASP THR ASN LEU PHE LYS PRO ILE LYS ILE GLY ASN ASN SEQRES 3 A 400 GLU LEU LEU HIS ARG ALA VAL ILE PRO PRO LEU THR ARG SEQRES 4 A 400 MET ARG ALA LEU HIS PRO GLY ASN ILE PRO ASN ARG ASP SEQRES 5 A 400 TRP ALA VAL GLU TYR TYR THR GLN ARG ALA GLN ARG PRO SEQRES 6 A 400 GLY THR MET ILE ILE THR GLU GLY ALA PHE ILE SER PRO SEQRES 7 A 400 GLN ALA GLY GLY TYR ASP ASN ALA PRO GLY VAL TRP SER SEQRES 8 A 400 GLU GLU GLN MET VAL GLU TRP THR LYS ILE PHE ASN ALA SEQRES 9 A 400 ILE HIS GLU LYS LYS SER PHE VAL TRP VAL GLN LEU ALA SEQRES 10 A 400 VAL LEU GLY TRP ALA ALA PHE PRO ASP ASN LEU ALA ARG SEQRES 11 A 400 ASP GLY LEU ARG TYR ASP SER ALA SER ASP ASN VAL PHE SEQRES 12 A 400 MET ASP ALA GLU GLN GLU ALA LYS ALA LYS LYS ALA ASN SEQRES 13 A 400 ASN PRO GLN HIS SER LEU THR LYS ASP GLU ILE LYS GLN SEQRES 14 A 400 TYR ILE LYS GLU TYR VAL GLN ALA ALA LYS ASN SER ILE SEQRES 15 A 400 ALA ALA GLY ALA ASP GLY VAL GLU ILE HIS SER ALA ASN SEQRES 16 A 400 GLY TYR LEU LEU ASN GLN PHE LEU ASP PRO HIS SER ASN SEQRES 17 A 400 THR ARG THR ASP GLU TYR GLY GLY SER ILE GLU ASN ARG SEQRES 18 A 400 ALA ARG PHE THR LEU GLU VAL VAL ASP ALA LEU VAL GLU SEQRES 19 A 400 ALA ILE GLY HIS GLU LYS VAL GLY LEU ARG LEU SER PRO SEQRES 20 A 400 TYR GLY VAL PHE ASN SER MET SER GLY GLY ALA GLU THR SEQRES 21 A 400 GLY ILE VAL ALA GLN TYR ALA TYR VAL ALA GLY GLU LEU SEQRES 22 A 400 GLU LYS ARG ALA LYS ALA GLY LYS ARG LEU ALA PHE VAL SEQRES 23 A 400 HIS LEU VAL GLU PRO ARG VAL THR ASN PRO PHE LEU THR SEQRES 24 A 400 GLU GLY GLU GLY GLU TYR GLU GLY GLY SER ASN ASP PHE SEQRES 25 A 400 VAL TYR SER ILE TRP LYS GLY PRO VAL ILE ARG ALA GLY SEQRES 26 A 400 ASN PHE ALA LEU HIS PRO GLU VAL VAL ARG GLU GLU VAL SEQRES 27 A 400 LYS ASP LYS ARG THR LEU ILE GLY TYR GLY ARG PHE PHE SEQRES 28 A 400 ILE SER ASN PRO ASP LEU VAL ASP ARG LEU GLU LYS GLY SEQRES 29 A 400 LEU PRO LEU ASN LYS TYR ASP ARG ASP THR PHE TYR GLN SEQRES 30 A 400 MET SER ALA HIS GLY TYR ILE ASP TYR PRO THR TYR GLU SEQRES 31 A 400 GLU ALA LEU LYS LEU GLY TRP ASP LYS LYS HET MG A 401 1 HET 0WV A 402 11 HET CL A 403 1 HET NA A 404 1 HET 1PE A 405 12 HET 1PE A 406 14 HET MG A 407 1 HET NA A 408 1 HET NA A 409 1 HET 1PE A 410 12 HET 1PE A 411 10 HET FMN A 412 31 HET CL A 413 1 HET NA A 414 1 HET 1PE A 415 8 HET NA A 416 1 HETNAM MG MAGNESIUM ION HETNAM 0WV 2-METHYL-5-(PROP-1-EN-2-YL)PHENOL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN 1PE PEG400 HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 3 0WV C10 H12 O FORMUL 4 CL 2(CL 1-) FORMUL 5 NA 5(NA 1+) FORMUL 6 1PE 5(C10 H22 O6) FORMUL 13 FMN C17 H21 N4 O9 P FORMUL 18 HOH *658(H2 O) HELIX 1 1 THR A 14 LYS A 18 5 5 HELIX 2 2 TRP A 52 ALA A 61 1 10 HELIX 3 3 SER A 76 GLY A 80 5 5 HELIX 4 4 SER A 90 LYS A 107 1 18 HELIX 5 5 LEU A 118 ALA A 122 5 5 HELIX 6 6 PHE A 123 ASP A 130 1 8 HELIX 7 7 ASP A 144 ALA A 154 1 11 HELIX 8 8 THR A 162 ALA A 183 1 22 HELIX 9 9 TYR A 196 ASP A 203 1 8 HELIX 10 10 SER A 216 ALA A 221 1 6 HELIX 11 11 ALA A 221 GLY A 236 1 16 HELIX 12 12 SER A 254 GLU A 258 5 5 HELIX 13 13 GLY A 260 ALA A 278 1 19 HELIX 14 14 ASP A 310 TRP A 316 1 7 HELIX 15 15 HIS A 329 VAL A 337 1 9 HELIX 16 16 GLY A 347 ASN A 353 1 7 HELIX 17 17 ASP A 355 GLY A 363 1 9 HELIX 18 18 ASP A 370 PHE A 374 5 5 HELIX 19 19 THR A 387 LEU A 394 1 8 HELIX 20 20 GLY A 395 LYS A 399 5 5 SHEET 1 A 2 ILE A 20 ILE A 22 0 SHEET 2 A 2 ASN A 25 LEU A 27 -1 O ASN A 25 N ILE A 22 SHEET 1 B 7 ALA A 31 VAL A 32 0 SHEET 2 B 7 THR A 342 GLY A 345 1 O ILE A 344 N VAL A 32 SHEET 3 B 7 VAL A 320 ALA A 323 1 N VAL A 320 O LEU A 343 SHEET 4 B 7 PHE A 284 VAL A 288 1 N LEU A 287 O ILE A 321 SHEET 5 B 7 VAL A 240 LEU A 244 1 N LEU A 242 O HIS A 286 SHEET 6 B 7 GLY A 187 HIS A 191 1 N ILE A 190 O GLY A 241 SHEET 7 B 7 MET A 67 ILE A 69 1 N ILE A 68 O TRP A 112 SHEET 1 C 7 ALA A 31 VAL A 32 0 SHEET 2 C 7 THR A 342 GLY A 345 1 O ILE A 344 N VAL A 32 SHEET 3 C 7 VAL A 320 ALA A 323 1 N VAL A 320 O LEU A 343 SHEET 4 C 7 PHE A 284 VAL A 288 1 N LEU A 287 O ILE A 321 SHEET 5 C 7 VAL A 240 LEU A 244 1 N LEU A 242 O HIS A 286 SHEET 6 C 7 GLY A 187 HIS A 191 1 N ILE A 190 O GLY A 241 SHEET 7 C 7 ALA A 73 PHE A 74 1 SHEET 1 D 2 ASP A 135 SER A 136 0 SHEET 2 D 2 HIS A 159 SER A 160 1 O HIS A 159 N SER A 136 LINK MG MG A 401 O HOH A1090 1555 1555 2.39 LINK NA NA A 404 OH3 1PE A 410 1555 1555 2.80 LINK NA NA A 404 OH5 1PE A 410 1555 1555 2.82 LINK NA NA A 404 OH4 1PE A 410 1555 1555 3.08 LINK NA NA A 404 O HOH A 915 1555 1555 3.17 LINK NA NA A 404 O HOH A1130 1555 1555 3.07 LINK OH4 1PE A 405 NA NA A 409 1555 1555 2.86 LINK OH5 1PE A 405 NA NA A 409 1555 1555 3.05 LINK OH6 1PE A 405 NA NA A 409 1555 1555 3.07 LINK OH3 1PE A 405 NA NA A 409 1555 1555 3.10 LINK OH3 1PE A 406 NA NA A 416 1555 1555 2.89 LINK OH4 1PE A 406 NA NA A 416 1555 1555 2.89 LINK OH6 1PE A 406 NA NA A 416 1555 1555 2.99 LINK OH5 1PE A 406 NA NA A 416 1555 1555 3.12 LINK MG MG A 407 O HOH A1151 1555 1555 2.05 LINK MG MG A 407 O HOH A1152 1555 1555 2.00 LINK MG MG A 407 O HOH A1153 1555 1555 2.10 LINK MG MG A 407 O HOH A1154 1555 1555 2.07 LINK NA NA A 414 OH3 1PE A 415 1555 1555 2.92 LINK NA NA A 414 OH4 1PE A 415 1555 1555 3.02 LINK NA NA A 416 O HOH A 611 1555 1555 2.96 CISPEP 1 HIS A 43 PRO A 44 0 2.16 SITE 1 AC1 2 HOH A 913 HOH A1090 SITE 1 AC2 9 THR A 37 TYR A 82 ALA A 116 HIS A 191 SITE 2 AC2 9 ASN A 194 TYR A 196 TYR A 375 FMN A 412 SITE 3 AC2 9 HOH A1148 SITE 1 AC3 2 ASP A 83 ASN A 126 SITE 1 AC4 3 TYR A 375 1PE A 410 HOH A1130 SITE 1 AC5 7 ASP A 51 TRP A 52 ASP A 358 GLU A 389 SITE 2 AC5 7 NA A 409 HOH A 909 HOH A1125 SITE 1 AC6 10 GLU A 305 GLY A 307 SER A 308 ASP A 310 SITE 2 AC6 10 TYR A 313 ARG A 322 ASP A 339 NA A 416 SITE 3 AC6 10 HOH A 976 HOH A1156 SITE 1 AC7 4 HOH A1151 HOH A1152 HOH A1153 HOH A1154 SITE 1 AC8 3 GLN A 9 ALA A 10 1PE A 411 SITE 1 AC9 2 TRP A 52 1PE A 405 SITE 1 BC1 3 PHE A 123 NA A 404 HOH A 769 SITE 1 BC2 9 PRO A 8 GLN A 9 ALA A 10 HIS A 43 SITE 2 BC2 9 ASP A 83 ARG A 334 LYS A 362 GLY A 363 SITE 3 BC2 9 NA A 408 SITE 1 BC3 19 PRO A 34 PRO A 35 LEU A 36 THR A 37 SITE 2 BC3 19 GLY A 72 GLN A 114 HIS A 191 ASN A 194 SITE 3 BC3 19 ARG A 243 PRO A 295 GLY A 324 ASN A 325 SITE 4 BC3 19 GLY A 347 ARG A 348 0WV A 402 HOH A 503 SITE 5 BC3 19 HOH A 504 HOH A 506 HOH A 515 SITE 1 BC4 2 LYS A 4 LYS A 368 SITE 1 BC5 1 1PE A 415 SITE 1 BC6 5 ASP A 370 HIS A 380 ASP A 384 NA A 414 SITE 2 BC6 5 HOH A 820 SITE 1 BC7 2 1PE A 406 HOH A 611 CRYST1 141.121 141.121 42.813 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007086 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007086 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023357 0.00000