HEADER TRANSFERASE 29-JUL-12 4GC5 TITLE CRYSTAL STRUCTURE OF MURINE TFB1M COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIMETHYLADENOSINE TRANSFERASE 1, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MITOCHONDRIAL 12S RRNA DIMETHYLASE 1, MITOCHONDRIAL COMPND 5 TRANSCRIPTION FACTOR B1, MTTFB1, S-ADENOSYLMETHIONINE-6-N', N'- COMPND 6 ADENOSYL(RRNA) DIMETHYLTRANSFERASE 1; COMPND 7 EC: 2.1.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TFB1M; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ARCTIC EXPRESS RIL (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS METHYLTRANSFERASE FOLD, RRNA METHYLTRANSFERASE, S-ADENOSYL-L- KEYWDS 2 METHIONINE (SAM) BINDING, METHYLATION, MITOCHONDRIA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.E.GUJA,E.YAKUBOVSKAYA,H.SHI,E.MEJIA,E.HAMBARDJIEVA,K.VENKATARAMAN, AUTHOR 2 A.W.KARZAI,M.GARCIA-DIAZ REVDAT 2 02-OCT-13 4GC5 1 JRNL REVDAT 1 10-JUL-13 4GC5 0 JRNL AUTH K.E.GUJA,K.VENKATARAMAN,E.YAKUBOVSKAYA,H.SHI,E.MEJIA, JRNL AUTH 2 E.HAMBARDJIEVA,A.W.KARZAI,M.GARCIA-DIAZ JRNL TITL STRUCTURAL BASIS FOR S-ADENOSYLMETHIONINE BINDING AND JRNL TITL 2 METHYLTRANSFERASE ACTIVITY BY MITOCHONDRIAL TRANSCRIPTION JRNL TITL 3 FACTOR B1. JRNL REF NUCLEIC ACIDS RES. V. 41 7947 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23804760 JRNL DOI 10.1093/NAR/GKT547 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 69.2 REMARK 3 NUMBER OF REFLECTIONS : 33212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4180 - 4.1204 0.96 3879 209 0.1356 0.1662 REMARK 3 2 4.1204 - 3.2714 1.00 3816 230 0.1359 0.1908 REMARK 3 3 3.2714 - 2.8581 1.00 3833 189 0.1905 0.2420 REMARK 3 4 2.8581 - 2.5969 1.00 3794 208 0.2181 0.2661 REMARK 3 5 2.5969 - 2.4108 0.92 3472 180 0.2384 0.2638 REMARK 3 6 2.4108 - 2.2687 0.79 2981 148 0.2364 0.2692 REMARK 3 7 2.2687 - 2.1551 0.68 2543 142 0.2842 0.3138 REMARK 3 8 2.1551 - 2.0613 0.58 2187 99 0.2474 0.2480 REMARK 3 9 2.0613 - 1.9820 0.49 1824 103 0.2581 0.2973 REMARK 3 10 1.9820 - 1.9136 0.40 1506 74 0.2753 0.3458 REMARK 3 11 1.9136 - 1.8538 0.30 1104 59 0.2838 0.3406 REMARK 3 12 1.8538 - 1.8010 0.16 595 37 0.2838 0.2949 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2616 REMARK 3 ANGLE : 1.515 3557 REMARK 3 CHIRALITY : 0.101 410 REMARK 3 PLANARITY : 0.007 457 REMARK 3 DIHEDRAL : 15.212 997 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resid 10 through 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2652 -9.3591 97.7419 REMARK 3 T TENSOR REMARK 3 T11: 0.6875 T22: 0.6641 REMARK 3 T33: 0.4112 T12: -0.2178 REMARK 3 T13: -0.0377 T23: -0.1124 REMARK 3 L TENSOR REMARK 3 L11: 1.3230 L22: 7.4911 REMARK 3 L33: 1.7888 L12: -0.6896 REMARK 3 L13: -0.2437 L23: -1.2405 REMARK 3 S TENSOR REMARK 3 S11: -0.1394 S12: 0.1530 S13: 0.1089 REMARK 3 S21: -0.2150 S22: 0.5503 S23: -0.5756 REMARK 3 S31: -0.4418 S32: 0.7643 S33: -0.4533 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resid 32 through 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8912 26.1370 83.9696 REMARK 3 T TENSOR REMARK 3 T11: 0.3314 T22: 0.3437 REMARK 3 T33: 0.2902 T12: -0.1141 REMARK 3 T13: 0.0310 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 2.5086 L22: 1.5097 REMARK 3 L33: 5.3254 L12: -0.1377 REMARK 3 L13: -0.8431 L23: -1.1723 REMARK 3 S TENSOR REMARK 3 S11: 0.0628 S12: -0.4367 S13: 0.0707 REMARK 3 S21: 0.2070 S22: 0.0857 S23: 0.1185 REMARK 3 S31: -0.0259 S32: -0.2738 S33: -0.1415 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resid 242 through 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1348 24.9449 59.1993 REMARK 3 T TENSOR REMARK 3 T11: 0.2774 T22: 0.2784 REMARK 3 T33: 0.3272 T12: -0.0704 REMARK 3 T13: -0.0003 T23: 0.1034 REMARK 3 L TENSOR REMARK 3 L11: 3.8386 L22: 0.9475 REMARK 3 L33: 3.4005 L12: -0.2808 REMARK 3 L13: -0.7336 L23: 0.2836 REMARK 3 S TENSOR REMARK 3 S11: 0.1569 S12: -0.2999 S13: -0.0163 REMARK 3 S21: -0.0070 S22: -0.1055 S23: -0.0316 REMARK 3 S31: 0.0820 S32: 0.2241 S33: -0.0396 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GC5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-12. REMARK 100 THE RCSB ID CODE IS RCSB073999. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33212 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.801 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.9 M SODIUM ACETATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.81500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.63500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 105.83000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.81500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.63500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 105.83000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.81500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.63500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 105.83000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.81500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.63500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 105.83000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 6 REMARK 465 LEU A 7 REMARK 465 GLY A 8 REMARK 465 THR A 9 REMARK 465 LYS A 329 REMARK 465 LYS A 330 REMARK 465 SER A 331 REMARK 465 LYS A 332 REMARK 465 GLY A 333 REMARK 465 GLN A 334 REMARK 465 GLU A 335 REMARK 465 LYS A 336 REMARK 465 ASP A 337 REMARK 465 GLY A 338 REMARK 465 ASP A 339 REMARK 465 PRO A 340 REMARK 465 GLU A 341 REMARK 465 SER A 342 REMARK 465 CYS A 343 REMARK 465 GLY A 344 REMARK 465 PHE A 345 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 10 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 18 CD1 REMARK 470 ARG A 19 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 32 CG CD OE1 NE2 REMARK 470 ASN A 77 CG OD1 ND2 REMARK 470 GLU A 179 CG CD OE1 OE2 REMARK 470 ARG A 183 CZ NH1 NH2 REMARK 470 LYS A 191 CD CE NZ REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 LYS A 220 CE NZ REMARK 470 ARG A 257 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 291 NE CZ NH1 NH2 REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 GLU A 313 CG CD OE1 OE2 REMARK 470 LYS A 327 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 63 O HOH A 635 2.02 REMARK 500 OE1 GLN A 282 O HOH A 570 2.12 REMARK 500 O HOH A 520 O HOH A 630 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 614 O HOH A 614 3556 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 11 100.36 -168.98 REMARK 500 LYS A 31 -4.37 -59.27 REMARK 500 GLN A 32 -132.01 -90.65 REMARK 500 LEU A 33 -27.41 38.46 REMARK 500 ASN A 135 47.94 -72.16 REMARK 500 ASP A 162 -164.56 -127.35 REMARK 500 LYS A 239 78.18 -116.76 REMARK 500 LYS A 327 59.46 -68.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU A 33 24.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GC9 RELATED DB: PDB DBREF 4GC5 A 1 345 UNP Q8JZM0 TFB1M_MOUSE 1 345 SEQRES 1 A 345 MSE ALA ALA SER GLY LYS LEU GLY THR PHE ARG LEU PRO SEQRES 2 A 345 PRO LEU PRO THR ILE ARG GLU ILE ILE LYS LEU PHE GLY SEQRES 3 A 345 LEU ARG ALA VAL LYS GLN LEU SER GLN ASN PHE LEU LEU SEQRES 4 A 345 ASP LEU ARG LEU THR ASP LYS ILE VAL ARG LYS ALA GLY SEQRES 5 A 345 SER LEU ALA ASP VAL TYR VAL TYR GLU VAL GLY PRO GLY SEQRES 6 A 345 PRO GLY GLY ILE THR ARG SER ILE LEU ASN ALA ASN VAL SEQRES 7 A 345 ALA GLU LEU LEU VAL VAL GLU LYS ASP THR ARG PHE ILE SEQRES 8 A 345 PRO GLY LEU GLN MSE LEU SER ASP ALA ALA PRO GLY LYS SEQRES 9 A 345 LEU ARG ILE VAL HIS GLY ASP VAL LEU THR TYR LYS ILE SEQRES 10 A 345 GLU LYS ALA PHE PRO GLY ASN ILE ARG ARG GLN TRP GLU SEQRES 11 A 345 ASP ASP PRO PRO ASN VAL HIS ILE ILE GLY ASN LEU PRO SEQRES 12 A 345 PHE SER VAL SER THR PRO LEU ILE ILE LYS TRP LEU GLU SEQRES 13 A 345 ASN ILE SER LEU LYS ASP GLY PRO PHE VAL TYR GLY ARG SEQRES 14 A 345 THR LYS MSE THR LEU THR PHE GLN LYS GLU VAL ALA GLU SEQRES 15 A 345 ARG LEU VAL ALA THR THR GLY SER LYS GLN HIS SER ARG SEQRES 16 A 345 LEU SER ILE MSE ALA GLN TYR LEU CYS ASN VAL GLU HIS SEQRES 17 A 345 LEU PHE THR ILE PRO GLY LYS ALA PHE VAL PRO LYS PRO SEQRES 18 A 345 LYS VAL ASP VAL GLY VAL VAL HIS LEU THR PRO LEU ILE SEQRES 19 A 345 GLU PRO LYS ILE LYS GLN PRO PHE LYS LEU VAL GLU LYS SEQRES 20 A 345 VAL VAL GLN ASN ALA PHE GLN PHE ARG ARG LYS TYR CYS SEQRES 21 A 345 HIS ARG GLY LEU GLY MSE LEU PHE PRO GLU ALA GLN ARG SEQRES 22 A 345 LEU GLU SER THR GLY ARG LEU LEU GLN LEU ALA ASP ILE SEQRES 23 A 345 ASP PRO THR LEU ARG PRO THR HIS LEU SER LEU MSE HIS SEQRES 24 A 345 PHE LYS SER LEU CYS ASP VAL TYR ARG LYS MSE CYS ASP SEQRES 25 A 345 GLU ASP PRO GLN LEU PHE THR TYR ASN PHE ARG GLU GLU SEQRES 26 A 345 LEU LYS GLN LYS LYS SER LYS GLY GLN GLU LYS ASP GLY SEQRES 27 A 345 ASP PRO GLU SER CYS GLY PHE MODRES 4GC5 MSE A 96 MET SELENOMETHIONINE MODRES 4GC5 MSE A 172 MET SELENOMETHIONINE MODRES 4GC5 MSE A 199 MET SELENOMETHIONINE MODRES 4GC5 MSE A 266 MET SELENOMETHIONINE MODRES 4GC5 MSE A 298 MET SELENOMETHIONINE MODRES 4GC5 MSE A 310 MET SELENOMETHIONINE HET MSE A 96 13 HET MSE A 172 8 HET MSE A 199 8 HET MSE A 266 8 HET MSE A 298 8 HET MSE A 310 8 HET ACT A 401 4 HET ACT A 402 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 ACT 2(C2 H3 O2 1-) FORMUL 4 HOH *233(H2 O) HELIX 1 1 THR A 17 LYS A 31 1 15 HELIX 2 2 ASP A 40 GLY A 52 1 13 HELIX 3 3 GLY A 67 ASN A 75 1 9 HELIX 4 4 ASP A 87 ARG A 89 5 3 HELIX 5 5 PHE A 90 ALA A 101 1 12 HELIX 6 6 PRO A 122 ARG A 126 5 5 HELIX 7 7 PRO A 143 LYS A 161 1 19 HELIX 8 8 ASP A 162 GLY A 168 5 7 HELIX 9 9 LYS A 178 ALA A 186 1 9 HELIX 10 10 SER A 194 TYR A 202 1 9 HELIX 11 11 PRO A 213 PHE A 217 5 5 HELIX 12 12 PRO A 241 GLN A 254 1 14 HELIX 13 13 TYR A 259 GLY A 265 1 7 HELIX 14 14 MSE A 266 PHE A 268 5 3 HELIX 15 15 PRO A 269 ALA A 271 5 3 HELIX 16 16 GLN A 272 ASP A 285 1 14 HELIX 17 17 ARG A 291 LEU A 295 5 5 HELIX 18 18 SER A 296 ASP A 314 1 19 HELIX 19 19 GLN A 316 TYR A 320 5 5 HELIX 20 20 ASN A 321 LYS A 327 1 7 SHEET 1 A 7 LEU A 105 VAL A 108 0 SHEET 2 A 7 GLU A 80 VAL A 84 1 N VAL A 83 O ARG A 106 SHEET 3 A 7 TYR A 58 VAL A 62 1 N VAL A 59 O LEU A 82 SHEET 4 A 7 VAL A 136 GLY A 140 1 O HIS A 137 N TYR A 60 SHEET 5 A 7 LYS A 171 GLN A 177 1 O LYS A 171 N ILE A 138 SHEET 6 A 7 VAL A 225 PRO A 232 -1 O GLY A 226 N PHE A 176 SHEET 7 A 7 CYS A 204 ILE A 212 -1 N ILE A 212 O VAL A 225 LINK C GLN A 95 N MSE A 96 1555 1555 1.33 LINK C MSE A 96 N LEU A 97 1555 1555 1.32 LINK C LYS A 171 N MSE A 172 1555 1555 1.32 LINK C MSE A 172 N THR A 173 1555 1555 1.33 LINK C ILE A 198 N MSE A 199 1555 1555 1.35 LINK C MSE A 199 N ALA A 200 1555 1555 1.33 LINK C GLY A 265 N MSE A 266 1555 1555 1.35 LINK C MSE A 266 N LEU A 267 1555 1555 1.33 LINK C LEU A 297 N MSE A 298 1555 1555 1.32 LINK C MSE A 298 N HIS A 299 1555 1555 1.32 LINK C LYS A 309 N MSE A 310 1555 1555 1.33 LINK C MSE A 310 N CYS A 311 1555 1555 1.32 CISPEP 1 VAL A 218 PRO A 219 0 -9.03 SITE 1 AC1 3 LYS A 258 TYR A 259 ARG A 262 SITE 1 AC2 5 GLN A 35 GLY A 63 GLU A 85 LYS A 86 SITE 2 AC2 5 HOH A 594 CRYST1 47.630 101.270 211.660 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020995 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004725 0.00000