HEADER TRANSFERASE/DNA 29-JUL-12 4GC6 TITLE CRYSTAL STRUCTURE OF DPO4 IN COMPLEX WITH N-MC-DAMP OPPOSITE DT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*C)-3'); COMPND 9 CHAIN: P; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: PRIMER DNA; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*TP*CP*AP*TP*GP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'); COMPND 15 CHAIN: T; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: TEMPLATE DNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS P2; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 GENE: DBH, DPO4, SSO2448; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B(+); SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: CHEMICALLY SYNTHESIZED OLIGONUCLEOTIDE; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: CHEMICALLY SYNTHESIZED OLIGONUCLEOTIDE KEYWDS DNA POLYMERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.L.EOFF,A.KETKAR,S.BANERJEE,M.K.ZAFAR REVDAT 4 13-SEP-23 4GC6 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4GC6 1 REMARK REVDAT 2 20-FEB-13 4GC6 1 JRNL REVDAT 1 24-OCT-12 4GC6 0 JRNL AUTH A.KETKAR,M.K.ZAFAR,S.BANERJEE,V.E.MARQUEZ,M.EGLI,R.L.EOFF JRNL TITL DIFFERENTIAL FURANOSE SELECTION IN THE ACTIVE SITES OF JRNL TITL 2 ARCHAEAL DNA POLYMERASES PROBED BY FIXED-CONFORMATION JRNL TITL 3 NUCLEOTIDE ANALOGUES. JRNL REF BIOCHEMISTRY V. 51 9234 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 23050956 JRNL DOI 10.1021/BI301043K REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 11623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7936 - 4.5943 0.97 2855 151 0.1967 0.2309 REMARK 3 2 4.5943 - 3.6471 0.99 2771 146 0.1887 0.3088 REMARK 3 3 3.6471 - 3.1862 0.99 2737 144 0.2084 0.3056 REMARK 3 4 3.1862 - 2.8950 0.97 2678 141 0.2713 0.3871 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 47.46 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.05590 REMARK 3 B22 (A**2) : 4.00360 REMARK 3 B33 (A**2) : -4.99650 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3546 REMARK 3 ANGLE : 1.308 4910 REMARK 3 CHIRALITY : 0.074 556 REMARK 3 PLANARITY : 0.005 519 REMARK 3 DIHEDRAL : 20.560 1420 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GC6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074000. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(220) SIDE BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11628 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.895 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.70400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2J6S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM TRIS HCL (PH 8.0), 15% PEG3350, REMARK 280 60 MM NACL, 5 MM MAGNESIUM CHLORIDE, 4% GLYCEROL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.82050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.67850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.82050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.67850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ALA A 343 REMARK 465 ILE A 344 REMARK 465 GLY A 345 REMARK 465 LEU A 346 REMARK 465 ASP A 347 REMARK 465 LYS A 348 REMARK 465 PHE A 349 REMARK 465 PHE A 350 REMARK 465 ASP A 351 REMARK 465 THR A 352 REMARK 465 DT T 1 REMARK 465 DC T 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 342 CA C O CB CG CD OE1 REMARK 470 GLU A 342 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 134 CG CD REMARK 480 GLU A 169 CD REMARK 480 GLU A 192 CD REMARK 480 GLU A 235 CD REMARK 480 GLU A 309 N CA C O CB CG CD REMARK 480 GLU A 309 OE1 OE2 REMARK 480 GLU A 324 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 511 O HOH A 528 1.94 REMARK 500 NH1 ARG A 332 OP2 DG T 5 2.02 REMARK 500 O HOH A 526 O HOH A 531 2.12 REMARK 500 N GLU A 342 O HOH A 522 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG P 5 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA P 6 O5' - C5' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 DA P 6 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG P 8 O4' - C1' - N9 ANGL. DEV. = 6.0 DEGREES REMARK 500 DG P 9 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG P 9 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC P 13 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DA T 3 O4' - C4' - C3' ANGL. DEV. = -3.6 DEGREES REMARK 500 DA T 3 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DG T 5 C3' - C2' - C1' ANGL. DEV. = -6.8 DEGREES REMARK 500 DG T 6 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA T 7 C1' - O4' - C4' ANGL. DEV. = -8.5 DEGREES REMARK 500 DA T 7 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA T 8 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC T 10 O4' - C1' - N1 ANGL. DEV. = 7.2 DEGREES REMARK 500 DC T 11 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 DT T 13 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DC T 14 C1' - O4' - C4' ANGL. DEV. = -8.9 DEGREES REMARK 500 DC T 17 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC T 18 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 52.78 25.96 REMARK 500 ASN A 20 73.32 -159.63 REMARK 500 ARG A 36 -78.98 -69.11 REMARK 500 PHE A 37 -156.92 -96.60 REMARK 500 ASN A 47 -179.52 -62.50 REMARK 500 ARG A 93 -5.63 -58.02 REMARK 500 TYR A 95 -42.19 -134.30 REMARK 500 ASP A 113 59.08 -93.75 REMARK 500 LYS A 114 0.08 -170.85 REMARK 500 ASP A 117 160.15 55.99 REMARK 500 SER A 145 -161.81 -165.51 REMARK 500 ASN A 161 21.26 40.43 REMARK 500 ASN A 234 46.46 -161.28 REMARK 500 ASP A 277 -125.45 59.55 REMARK 500 HIS A 304 -169.34 -115.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 0OH A 401 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 PHE A 8 O 99.9 REMARK 620 3 ASP A 105 OD2 141.8 84.9 REMARK 620 4 0OH A 401 OAH 106.2 134.9 95.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 181 O REMARK 620 2 ILE A 186 O 70.2 REMARK 620 3 HOH A 512 O 91.4 119.4 REMARK 620 4 HOH A 513 O 55.3 51.8 146.6 REMARK 620 5 HOH A 514 O 120.4 91.4 142.7 68.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 294 OD2 REMARK 620 2 HOH A 529 O 59.1 REMARK 620 3 HOH A 530 O 97.5 124.0 REMARK 620 4 DA P 10 OP2 111.2 80.7 60.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0OH A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AGQ RELATED DB: PDB REMARK 900 RELATED ID: 3PR5 RELATED DB: PDB REMARK 900 RELATED ID: 2J6S RELATED DB: PDB REMARK 900 RELATED ID: 3T5J RELATED DB: PDB REMARK 900 RELATED ID: 4GC7 RELATED DB: PDB DBREF 4GC6 A 1 352 UNP Q97W02 DPO4_SULSO 1 352 DBREF 4GC6 P 1 14 PDB 4GC6 4GC6 1 14 DBREF 4GC6 T 1 18 PDB 4GC6 4GC6 1 18 SEQADV 4GC6 HIS A -5 UNP Q97W02 EXPRESSION TAG SEQADV 4GC6 HIS A -4 UNP Q97W02 EXPRESSION TAG SEQADV 4GC6 HIS A -3 UNP Q97W02 EXPRESSION TAG SEQADV 4GC6 HIS A -2 UNP Q97W02 EXPRESSION TAG SEQADV 4GC6 HIS A -1 UNP Q97W02 EXPRESSION TAG SEQADV 4GC6 HIS A 0 UNP Q97W02 EXPRESSION TAG SEQRES 1 A 358 HIS HIS HIS HIS HIS HIS MET ILE VAL LEU PHE VAL ASP SEQRES 2 A 358 PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL LEU ASN SEQRES 3 A 358 PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS VAL PHE SEQRES 4 A 358 SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA THR ALA SEQRES 5 A 358 ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA GLY ILE SEQRES 6 A 358 PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN ALA VAL SEQRES 7 A 358 TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN VAL SER SEQRES 8 A 358 SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER GLU LYS SEQRES 9 A 358 ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU ASP ILE SEQRES 10 A 358 SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR ASN LEU SEQRES 11 A 358 GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS GLU LYS SEQRES 12 A 358 ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS VAL PHE SEQRES 13 A 358 ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN GLY ILE SEQRES 14 A 358 LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU ILE ARG SEQRES 15 A 358 GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY ASN ILE SEQRES 16 A 358 THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN LYS LEU SEQRES 17 A 358 VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU LYS GLY SEQRES 18 A 358 MET ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SER LEU SEQRES 19 A 358 ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR ARG VAL SEQRES 20 A 358 ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS ARG ASN SEQRES 21 A 358 SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU PHE ARG SEQRES 22 A 358 ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS ARG ILE SEQRES 23 A 358 PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU ASP LEU SEQRES 24 A 358 ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS GLY ILE SEQRES 25 A 358 SER LYS GLU THR ALA TYR SER GLU SER VAL LYS LEU LEU SEQRES 26 A 358 GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE ARG ARG SEQRES 27 A 358 ILE GLY VAL ARG PHE SER LYS PHE ILE GLU ALA ILE GLY SEQRES 28 A 358 LEU ASP LYS PHE PHE ASP THR SEQRES 1 P 14 DG DG DG DG DG DA DA DG DG DA DT DT DC SEQRES 2 P 14 DC SEQRES 1 T 18 DT DC DA DT DG DG DA DA DT DC DC DT DT SEQRES 2 T 18 DC DC DC DC DC HET 0OH A 401 23 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET CA A 405 1 HETNAM 0OH NORTH-METHANOCARBA-2'-DEOXYADENOSINE TRIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 4 0OH C12 H18 N5 O11 P3 FORMUL 5 CA 4(CA 2+) FORMUL 9 HOH *45(H2 O) HELIX 1 1 TYR A 10 LEU A 19 1 10 HELIX 2 2 ASN A 20 LYS A 24 5 5 HELIX 3 3 ASN A 47 LYS A 52 1 6 HELIX 4 4 PRO A 60 LEU A 68 1 9 HELIX 5 5 ARG A 77 ARG A 93 1 17 HELIX 6 6 SER A 112 VAL A 115 5 4 HELIX 7 7 ARG A 116 GLU A 136 1 21 HELIX 8 8 ASN A 147 LYS A 159 1 13 HELIX 9 9 ASP A 167 LEU A 178 1 12 HELIX 10 10 ASP A 179 VAL A 183 5 5 HELIX 11 11 GLY A 187 LEU A 197 1 11 HELIX 12 12 LYS A 201 SER A 207 5 7 HELIX 13 13 GLU A 209 ARG A 230 1 22 HELIX 14 14 ASN A 257 LEU A 276 1 20 HELIX 15 15 SER A 307 ASP A 326 1 20 SHEET 1 A 5 ILE A 99 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 A 5 VAL A 140 SER A 145 -1 O SER A 145 N VAL A 3 SHEET 5 A 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 VAL A 28 PHE A 33 -1 N VAL A 30 O ALA A 44 SHEET 3 B 3 VAL A 72 PRO A 75 1 O LEU A 74 N CYS A 31 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 ILE A 341 -1 O ILE A 330 N SER A 255 SHEET 3 C 4 ILE A 280 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 C 4 ILE A 295 THR A 301 -1 O ARG A 298 N VAL A 286 LINK OD1 ASP A 7 CA CA A 402 1555 1555 3.04 LINK OD2 ASP A 7 CA CA A 403 1555 1555 2.96 LINK O PHE A 8 CA CA A 402 1555 1555 2.69 LINK OD2 ASP A 105 CA CA A 402 1555 1555 2.93 LINK O ALA A 181 CA CA A 404 1555 1555 3.02 LINK O ILE A 186 CA CA A 404 1555 1555 3.05 LINK OD2 ASP A 294 CA CA A 405 1555 1555 3.08 LINK OAH 0OH A 401 CA CA A 402 1555 1555 2.93 LINK CA CA A 404 O HOH A 512 1555 1555 3.05 LINK CA CA A 404 O HOH A 513 1555 1555 2.83 LINK CA CA A 404 O HOH A 514 1555 1555 3.13 LINK CA CA A 405 O HOH A 529 1555 1555 2.59 LINK CA CA A 405 O HOH A 530 1555 1555 3.05 LINK CA CA A 405 OP2 DA P 10 1555 1555 3.17 CISPEP 1 LYS A 159 PRO A 160 0 -9.16 SITE 1 AC1 14 TYR A 10 PHE A 11 TYR A 12 ALA A 44 SITE 2 AC1 14 THR A 45 ARG A 51 ASP A 105 CA A 402 SITE 3 AC1 14 CA A 403 HOH A 526 HOH A 531 DC P 14 SITE 4 AC1 14 DT T 4 DG T 5 SITE 1 AC2 4 ASP A 7 PHE A 8 ASP A 105 0OH A 401 SITE 1 AC3 4 ASP A 7 GLU A 106 0OH A 401 DC P 14 SITE 1 AC4 5 ALA A 181 ILE A 186 HOH A 512 HOH A 513 SITE 2 AC4 5 DC P 13 SITE 1 AC5 4 ASP A 294 HOH A 529 HOH A 530 DA P 10 CRYST1 93.641 103.357 52.491 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010679 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019051 0.00000