HEADER TRANSFERASE 30-JUL-12 4GCI TITLE CRYSTAL STRUCTURE OF GLUTAHTIONE S-TRANSFERASE HOMOLOG FROM YERSINIA TITLE 2 PESTIS, TARGET EFI-501894, WITH BOUND GLUTATHIONE, MONOCLINIC FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUTATHIONINE S-TRANSFERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: GST, GST2, Y1968, YP_2153; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS GST, GLUTATHIONE S-TRANSFERASE, ENZYME FUNCTION INITIATIVE, EFI, KEYWDS 2 STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN, AUTHOR 2 S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, AUTHOR 3 B.HILLERICH,J.LOVE,R.D.SEIDEL,H.J.IMKER,R.N.ARMSTRONG,J.A.GERLT, AUTHOR 4 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 2 13-SEP-23 4GCI 1 REMARK SEQADV REVDAT 1 29-AUG-12 4GCI 0 JRNL AUTH M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO, JRNL AUTH 2 S.R.WASSERMAN,S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN, JRNL AUTH 3 S.CHOWDHURY,B.EVANS,J.HAMMONDS,B.HILLERICH,J.LOVE, JRNL AUTH 4 R.D.SEIDEL,H.J.IMKER,R.N.ARMSTRONG,J.A.GERLT,S.C.ALMO, JRNL AUTH 5 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF GLUTAHTIONE S-TRANSFERASE HOMOLOG FROM JRNL TITL 2 YERSINIA PESTIS, TARGET EFI-501894, WITH BOUND GLUTATHIONE, JRNL TITL 3 MONOCLINIC FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 72757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.8755 - 4.4334 0.97 2628 152 0.1678 0.1825 REMARK 3 2 4.4334 - 3.5230 1.00 2704 139 0.1489 0.1742 REMARK 3 3 3.5230 - 3.0789 1.00 2667 140 0.1599 0.2185 REMARK 3 4 3.0789 - 2.7979 1.00 2674 150 0.1733 0.2111 REMARK 3 5 2.7979 - 2.5977 1.00 2639 150 0.1787 0.2039 REMARK 3 6 2.5977 - 2.4447 1.00 2679 145 0.1754 0.2095 REMARK 3 7 2.4447 - 2.3224 1.00 2637 141 0.1707 0.1979 REMARK 3 8 2.3224 - 2.2214 1.00 2658 149 0.1763 0.2237 REMARK 3 9 2.2214 - 2.1360 1.00 2652 154 0.1698 0.2164 REMARK 3 10 2.1360 - 2.0623 1.00 2660 147 0.1710 0.1852 REMARK 3 11 2.0623 - 1.9979 1.00 2669 134 0.1800 0.2051 REMARK 3 12 1.9979 - 1.9408 1.00 2651 140 0.1759 0.1919 REMARK 3 13 1.9408 - 1.8897 1.00 2667 133 0.1716 0.2308 REMARK 3 14 1.8897 - 1.8436 1.00 2676 132 0.1736 0.1955 REMARK 3 15 1.8436 - 1.8017 1.00 2602 141 0.1770 0.2098 REMARK 3 16 1.8017 - 1.7634 1.00 2683 153 0.1870 0.2304 REMARK 3 17 1.7634 - 1.7281 1.00 2650 141 0.1933 0.2490 REMARK 3 18 1.7281 - 1.6955 1.00 2634 136 0.2012 0.2282 REMARK 3 19 1.6955 - 1.6653 1.00 2695 143 0.1965 0.2364 REMARK 3 20 1.6653 - 1.6370 1.00 2622 136 0.1962 0.2155 REMARK 3 21 1.6370 - 1.6106 1.00 2645 144 0.2032 0.2455 REMARK 3 22 1.6106 - 1.5859 1.00 2675 131 0.2068 0.2148 REMARK 3 23 1.5859 - 1.5626 1.00 2656 137 0.2220 0.2890 REMARK 3 24 1.5626 - 1.5406 1.00 2644 135 0.2390 0.2512 REMARK 3 25 1.5406 - 1.5197 1.00 2618 127 0.2563 0.2623 REMARK 3 26 1.5197 - 1.5000 1.00 2703 139 0.2721 0.3087 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3359 REMARK 3 ANGLE : 1.038 4566 REMARK 3 CHIRALITY : 0.064 513 REMARK 3 PLANARITY : 0.005 588 REMARK 3 DIHEDRAL : 13.813 1268 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3789 96.4799 74.2720 REMARK 3 T TENSOR REMARK 3 T11: 0.2456 T22: 0.2268 REMARK 3 T33: 0.1723 T12: 0.0022 REMARK 3 T13: -0.0379 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.1849 L22: 1.4593 REMARK 3 L33: 1.7261 L12: -0.2167 REMARK 3 L13: -0.7764 L23: -0.0565 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: -0.1920 S13: 0.0528 REMARK 3 S21: 0.3008 S22: 0.0554 S23: -0.0815 REMARK 3 S31: -0.1242 S32: 0.0409 S33: -0.0479 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0576 84.4018 59.3598 REMARK 3 T TENSOR REMARK 3 T11: 0.2132 T22: 0.2883 REMARK 3 T33: 0.3019 T12: -0.0035 REMARK 3 T13: -0.0204 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.7999 L22: 1.1439 REMARK 3 L33: 0.9015 L12: -0.7025 REMARK 3 L13: 0.0393 L23: 0.3185 REMARK 3 S TENSOR REMARK 3 S11: 0.1072 S12: 0.0949 S13: -0.2030 REMARK 3 S21: -0.1493 S22: -0.1236 S23: 0.3642 REMARK 3 S31: -0.0060 S32: -0.2931 S33: 0.0201 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4989 82.0903 67.6262 REMARK 3 T TENSOR REMARK 3 T11: 0.2186 T22: 0.2095 REMARK 3 T33: 0.2097 T12: 0.0126 REMARK 3 T13: -0.0205 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.9664 L22: 1.5054 REMARK 3 L33: 1.1167 L12: -0.2790 REMARK 3 L13: -0.0249 L23: 0.4077 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.0820 S13: -0.1007 REMARK 3 S21: 0.1231 S22: 0.0396 S23: -0.0848 REMARK 3 S31: 0.0814 S32: 0.0609 S33: -0.0482 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4844 74.6610 65.7684 REMARK 3 T TENSOR REMARK 3 T11: 0.2534 T22: 0.2290 REMARK 3 T33: 0.3340 T12: -0.0110 REMARK 3 T13: 0.0210 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 2.3724 L22: 2.4802 REMARK 3 L33: 2.1436 L12: -0.5786 REMARK 3 L13: -0.4211 L23: 0.5014 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: 0.1620 S13: -0.2371 REMARK 3 S21: 0.1316 S22: 0.0737 S23: 0.3309 REMARK 3 S31: 0.2416 S32: -0.0151 S33: -0.0284 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2453 83.3663 82.0030 REMARK 3 T TENSOR REMARK 3 T11: 0.3987 T22: 0.3171 REMARK 3 T33: 0.2097 T12: -0.0039 REMARK 3 T13: -0.0420 T23: 0.0580 REMARK 3 L TENSOR REMARK 3 L11: 3.6634 L22: 3.5874 REMARK 3 L33: 3.1747 L12: -1.5153 REMARK 3 L13: -0.5903 L23: 0.6366 REMARK 3 S TENSOR REMARK 3 S11: 0.0880 S12: -0.3551 S13: -0.2506 REMARK 3 S21: 0.5144 S22: 0.0822 S23: 0.1000 REMARK 3 S31: 0.3501 S32: -0.1679 S33: -0.1653 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9391 97.5939 49.4698 REMARK 3 T TENSOR REMARK 3 T11: 0.2029 T22: 0.2100 REMARK 3 T33: 0.2333 T12: -0.0015 REMARK 3 T13: 0.0147 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.9492 L22: 1.6047 REMARK 3 L33: 2.0476 L12: -0.0869 REMARK 3 L13: -0.1012 L23: -0.6242 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 0.0737 S13: -0.0258 REMARK 3 S21: -0.1583 S22: -0.0235 S23: -0.1281 REMARK 3 S31: 0.0957 S32: 0.0752 S33: -0.0165 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9979 101.0212 56.3308 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.2805 REMARK 3 T33: 0.3416 T12: 0.0256 REMARK 3 T13: 0.0153 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.0978 L22: 0.9951 REMARK 3 L33: 0.3562 L12: 0.8436 REMARK 3 L13: -0.4391 L23: -0.4391 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: 0.0561 S13: 0.0556 REMARK 3 S21: 0.0091 S22: 0.0244 S23: 0.3115 REMARK 3 S31: 0.0183 S32: -0.0993 S33: -0.0470 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 142 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2429 111.8051 51.3192 REMARK 3 T TENSOR REMARK 3 T11: 0.2040 T22: 0.2004 REMARK 3 T33: 0.2835 T12: 0.0145 REMARK 3 T13: 0.0153 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.9722 L22: 2.0358 REMARK 3 L33: 1.5156 L12: 0.3880 REMARK 3 L13: -0.6256 L23: -0.7450 REMARK 3 S TENSOR REMARK 3 S11: 0.0605 S12: 0.0250 S13: 0.3604 REMARK 3 S21: 0.0324 S22: 0.0674 S23: 0.2356 REMARK 3 S31: -0.1662 S32: -0.1402 S33: -0.1030 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GCI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72798 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 53.257 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : 0.57700 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4G9H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES PH 7.5, 100 MM REMARK 280 NACL); RESERVOIR (0.2 M AMMONIUM ACETATE, 0.1 M BIS-TRIS:HCL PH REMARK 280 5.5, 25% (W/V) PEG 3350); CRYOPROTECTION (RESERVOIR, + 20% REMARK 280 ETHYLENE GLYCOL), SITTING DROP VAPOR DIFFUCTION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.66900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 LYS A 202 REMARK 465 ALA A 203 REMARK 465 GLU A 204 REMARK 465 ASN A 205 REMARK 465 LEU A 206 REMARK 465 TYR A 207 REMARK 465 PHE A 208 REMARK 465 GLN A 209 REMARK 465 MET B -1 REMARK 465 LYS B 202 REMARK 465 ALA B 203 REMARK 465 GLU B 204 REMARK 465 ASN B 205 REMARK 465 LEU B 206 REMARK 465 TYR B 207 REMARK 465 PHE B 208 REMARK 465 GLN B 209 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 444 O HOH B 557 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 47 -65.83 -92.25 REMARK 500 GLU A 66 111.97 73.51 REMARK 500 LEU A 106 -68.38 -103.36 REMARK 500 GLU B 66 113.33 76.63 REMARK 500 LEU B 106 -63.37 -100.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-501894 RELATED DB: TARGETTRACK DBREF 4GCI A 1 202 UNP Q8D0L3 Q8D0L3_YERPE 1 202 DBREF 4GCI B 1 202 UNP Q8D0L3 Q8D0L3_YERPE 1 202 SEQADV 4GCI MET A -1 UNP Q8D0L3 INITIATING METHIONINE SEQADV 4GCI VAL A 0 UNP Q8D0L3 EXPRESSION TAG SEQADV 4GCI ALA A 203 UNP Q8D0L3 EXPRESSION TAG SEQADV 4GCI GLU A 204 UNP Q8D0L3 EXPRESSION TAG SEQADV 4GCI ASN A 205 UNP Q8D0L3 EXPRESSION TAG SEQADV 4GCI LEU A 206 UNP Q8D0L3 EXPRESSION TAG SEQADV 4GCI TYR A 207 UNP Q8D0L3 EXPRESSION TAG SEQADV 4GCI PHE A 208 UNP Q8D0L3 EXPRESSION TAG SEQADV 4GCI GLN A 209 UNP Q8D0L3 EXPRESSION TAG SEQADV 4GCI MET B -1 UNP Q8D0L3 INITIATING METHIONINE SEQADV 4GCI VAL B 0 UNP Q8D0L3 EXPRESSION TAG SEQADV 4GCI ALA B 203 UNP Q8D0L3 EXPRESSION TAG SEQADV 4GCI GLU B 204 UNP Q8D0L3 EXPRESSION TAG SEQADV 4GCI ASN B 205 UNP Q8D0L3 EXPRESSION TAG SEQADV 4GCI LEU B 206 UNP Q8D0L3 EXPRESSION TAG SEQADV 4GCI TYR B 207 UNP Q8D0L3 EXPRESSION TAG SEQADV 4GCI PHE B 208 UNP Q8D0L3 EXPRESSION TAG SEQADV 4GCI GLN B 209 UNP Q8D0L3 EXPRESSION TAG SEQRES 1 A 211 MET VAL MET MET LYS LEU PHE TYR LYS PRO GLY ALA CYS SEQRES 2 A 211 SER LEU SER PRO HIS ILE VAL LEU ARG GLU ALA GLY LEU SEQRES 3 A 211 ASP PHE SER ILE GLU ARG VAL ASP LEU VAL THR LYS LYS SEQRES 4 A 211 THR GLU THR GLY ALA ASP TYR LEU SER ILE ASN PRO LYS SEQRES 5 A 211 GLY GLN VAL PRO ALA LEU VAL LEU ASP ASP GLY SER LEU SEQRES 6 A 211 LEU THR GLU GLY VAL ALA ILE VAL GLN TYR LEU ALA ASP SEQRES 7 A 211 LYS VAL PRO ASP ARG HIS LEU ILE ALA PRO SER GLY THR SEQRES 8 A 211 LEU SER ARG TYR HIS ALA ILE GLU TRP LEU ASN PHE ILE SEQRES 9 A 211 ALA THR GLU LEU HIS LYS GLY PHE SER PRO LEU PHE ASN SEQRES 10 A 211 PRO ASN THR PRO ASP GLU TYR LYS THR ILE VAL ARG GLU SEQRES 11 A 211 ARG LEU ASP LYS GLN PHE SER TYR VAL ASP SER VAL LEU SEQRES 12 A 211 ALA GLU HIS ASP TYR LEU LEU GLY LYS LYS PHE SER VAL SEQRES 13 A 211 ALA ASP ALA TYR LEU PHE THR VAL SER ARG TRP ALA ASN SEQRES 14 A 211 ALA LEU ASN LEU GLN ILE LYS GLU ARG SER HIS LEU ASP SEQRES 15 A 211 GLN TYR MET ALA ARG VAL ALA GLU ARG PRO ALA VAL LYS SEQRES 16 A 211 ALA ALA LEU ALA ALA GLU ASP ILE LYS ALA GLU ASN LEU SEQRES 17 A 211 TYR PHE GLN SEQRES 1 B 211 MET VAL MET MET LYS LEU PHE TYR LYS PRO GLY ALA CYS SEQRES 2 B 211 SER LEU SER PRO HIS ILE VAL LEU ARG GLU ALA GLY LEU SEQRES 3 B 211 ASP PHE SER ILE GLU ARG VAL ASP LEU VAL THR LYS LYS SEQRES 4 B 211 THR GLU THR GLY ALA ASP TYR LEU SER ILE ASN PRO LYS SEQRES 5 B 211 GLY GLN VAL PRO ALA LEU VAL LEU ASP ASP GLY SER LEU SEQRES 6 B 211 LEU THR GLU GLY VAL ALA ILE VAL GLN TYR LEU ALA ASP SEQRES 7 B 211 LYS VAL PRO ASP ARG HIS LEU ILE ALA PRO SER GLY THR SEQRES 8 B 211 LEU SER ARG TYR HIS ALA ILE GLU TRP LEU ASN PHE ILE SEQRES 9 B 211 ALA THR GLU LEU HIS LYS GLY PHE SER PRO LEU PHE ASN SEQRES 10 B 211 PRO ASN THR PRO ASP GLU TYR LYS THR ILE VAL ARG GLU SEQRES 11 B 211 ARG LEU ASP LYS GLN PHE SER TYR VAL ASP SER VAL LEU SEQRES 12 B 211 ALA GLU HIS ASP TYR LEU LEU GLY LYS LYS PHE SER VAL SEQRES 13 B 211 ALA ASP ALA TYR LEU PHE THR VAL SER ARG TRP ALA ASN SEQRES 14 B 211 ALA LEU ASN LEU GLN ILE LYS GLU ARG SER HIS LEU ASP SEQRES 15 B 211 GLN TYR MET ALA ARG VAL ALA GLU ARG PRO ALA VAL LYS SEQRES 16 B 211 ALA ALA LEU ALA ALA GLU ASP ILE LYS ALA GLU ASN LEU SEQRES 17 B 211 TYR PHE GLN HET CL A 301 1 HET GSH A 302 20 HET GSH B 301 20 HETNAM CL CHLORIDE ION HETNAM GSH GLUTATHIONE FORMUL 3 CL CL 1- FORMUL 4 GSH 2(C10 H17 N3 O6 S) FORMUL 6 HOH *511(H2 O) HELIX 1 1 SER A 12 ALA A 22 1 11 HELIX 2 2 ASP A 43 ILE A 47 5 5 HELIX 3 3 GLU A 66 VAL A 78 1 13 HELIX 4 4 PRO A 79 HIS A 82 5 4 HELIX 5 5 THR A 89 LEU A 106 1 18 HELIX 6 6 HIS A 107 GLY A 109 5 3 HELIX 7 7 PHE A 110 ASN A 115 1 6 HELIX 8 8 PRO A 119 ALA A 142 1 24 HELIX 9 9 SER A 153 LEU A 169 1 17 HELIX 10 10 ARG A 176 ALA A 187 1 12 HELIX 11 11 ARG A 189 GLU A 199 1 11 HELIX 12 12 SER B 12 GLY B 23 1 12 HELIX 13 13 ASP B 43 ILE B 47 5 5 HELIX 14 14 GLU B 66 VAL B 78 1 13 HELIX 15 15 PRO B 79 HIS B 82 5 4 HELIX 16 16 THR B 89 LEU B 106 1 18 HELIX 17 17 LEU B 106 ASN B 115 1 10 HELIX 18 18 PRO B 119 ALA B 142 1 24 HELIX 19 19 SER B 153 LEU B 169 1 17 HELIX 20 20 ARG B 176 ALA B 187 1 12 HELIX 21 21 ARG B 189 GLU B 199 1 11 SHEET 1 A 5 LYS A 37 THR A 38 0 SHEET 2 A 5 PHE A 26 ASP A 32 -1 N ASP A 32 O LYS A 37 SHEET 3 A 5 MET A 2 TYR A 6 1 N LEU A 4 O GLU A 29 SHEET 4 A 5 ALA A 55 VAL A 57 -1 O ALA A 55 N PHE A 5 SHEET 5 A 5 LEU A 63 THR A 65 -1 O LEU A 64 N LEU A 56 SHEET 1 B 5 LYS B 37 THR B 38 0 SHEET 2 B 5 PHE B 26 ASP B 32 -1 N ASP B 32 O LYS B 37 SHEET 3 B 5 MET B 2 TYR B 6 1 N LEU B 4 O SER B 27 SHEET 4 B 5 ALA B 55 VAL B 57 -1 O ALA B 55 N PHE B 5 SHEET 5 B 5 LEU B 63 THR B 65 -1 O LEU B 64 N LEU B 56 CISPEP 1 VAL A 53 PRO A 54 0 -2.07 CISPEP 2 VAL B 53 PRO B 54 0 -3.60 SITE 1 AC1 3 ASP A 25 PHE A 26 HOH A 623 SITE 1 AC2 19 CYS A 11 LEU A 33 LYS A 36 GLY A 51 SITE 2 AC2 19 GLN A 52 VAL A 53 GLU A 66 GLY A 67 SITE 3 AC2 19 HIS A 107 LYS A 108 HOH A 402 HOH A 408 SITE 4 AC2 19 HOH A 425 HOH A 489 HOH A 570 HOH A 637 SITE 5 AC2 19 ASN B 100 THR B 104 GLU B 105 SITE 1 AC3 17 ASN A 100 THR A 104 GLU A 105 CYS B 11 SITE 2 AC3 17 LEU B 33 LYS B 36 GLN B 52 VAL B 53 SITE 3 AC3 17 GLU B 66 GLY B 67 HIS B 107 HOH B 403 SITE 4 AC3 17 HOH B 408 HOH B 420 HOH B 486 HOH B 573 SITE 5 AC3 17 HOH B 647 CRYST1 48.741 89.338 57.546 90.00 112.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020516 0.000000 0.008398 0.00000 SCALE2 0.000000 0.011193 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018777 0.00000