HEADER OXIDOREDUCTASE 30-JUL-12 4GCM TITLE CRYSTAL STRUCTURE OF A THIOREDOXINE REDUCTASE (TRXB) FROM TITLE 2 STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MU50 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRXR; COMPND 5 EC: 1.8.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 196620; SOURCE 4 STRAIN: MW2; SOURCE 5 GENE: TRXB, MW0726; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS FAD/NAD-LINKED REDUCTASES, PYR REDOX 2 FAMILY, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-BIOLOGY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4GCM 1 SEQADV REVDAT 3 18-AUG-21 4GCM 1 REMARK LINK REVDAT 2 15-NOV-17 4GCM 1 REMARK REVDAT 1 29-AUG-12 4GCM 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A THIOREDOXINE REDUCTASE (TRXB) FROM JRNL TITL 2 STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MU50 AT 1.80 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 72471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3654 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.36 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5294 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2251 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5047 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE : 0.2478 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.67 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 247 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4690 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 189 REMARK 3 SOLVENT ATOMS : 598 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.24020 REMARK 3 B22 (A**2) : 5.09300 REMARK 3 B33 (A**2) : 3.14730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.191 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5136 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6990 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2451 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 132 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 846 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5136 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 699 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 4 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6314 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.68 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.62 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|3 - 310} REMARK 3 ORIGIN FOR THE GROUP (A): 15.1848 46.5832 35.8893 REMARK 3 T TENSOR REMARK 3 T11: 0.0074 T22: -0.0850 REMARK 3 T33: -0.0320 T12: -0.0045 REMARK 3 T13: -0.0201 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.4717 L22: 0.5256 REMARK 3 L33: 0.5746 L12: 0.2024 REMARK 3 L13: -0.2687 L23: -0.1881 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: 0.0111 S13: -0.0207 REMARK 3 S21: 0.0717 S22: -0.0006 S23: -0.0817 REMARK 3 S31: -0.0656 S32: 0.0519 S33: 0.0268 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|401 - 401} REMARK 3 ORIGIN FOR THE GROUP (A): 10.4636 47.9471 36.4432 REMARK 3 T TENSOR REMARK 3 T11: 0.0576 T22: -0.0484 REMARK 3 T33: -0.0103 T12: -0.0073 REMARK 3 T13: 0.0107 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.4536 L22: 0.4297 REMARK 3 L33: 0.4467 L12: 0.0172 REMARK 3 L13: 0.2357 L23: -0.3083 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: -0.0212 S13: 0.0667 REMARK 3 S21: -0.0238 S22: -0.0001 S23: -0.0036 REMARK 3 S31: -0.0432 S32: 0.0006 S33: 0.0093 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {B|2 - 310} REMARK 3 ORIGIN FOR THE GROUP (A): 4.3106 23.5635 50.8664 REMARK 3 T TENSOR REMARK 3 T11: -0.0315 T22: -0.0863 REMARK 3 T33: -0.0274 T12: -0.0110 REMARK 3 T13: -0.0357 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.2770 L22: 0.8026 REMARK 3 L33: 0.8310 L12: 0.0646 REMARK 3 L13: -0.1576 L23: -0.1347 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: -0.0321 S13: -0.0592 REMARK 3 S21: 0.0272 S22: -0.0031 S23: -0.1199 REMARK 3 S31: 0.0132 S32: 0.0070 S33: -0.0098 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {B|401 - 401} REMARK 3 ORIGIN FOR THE GROUP (A): 3.0377 22.4896 46.3762 REMARK 3 T TENSOR REMARK 3 T11: 0.0154 T22: -0.0342 REMARK 3 T33: 0.0143 T12: 0.0012 REMARK 3 T13: -0.0126 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.7706 L22: 0.4723 REMARK 3 L33: 0.9677 L12: 0.4074 REMARK 3 L13: 0.0066 L23: -0.9140 REMARK 3 S TENSOR REMARK 3 S11: 0.0140 S12: 0.0121 S13: -0.0773 REMARK 3 S21: 0.0156 S22: 0.0429 S23: 0.0151 REMARK 3 S31: 0.0389 S32: 0.0182 S33: -0.0568 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {B|402 - 403} REMARK 3 ORIGIN FOR THE GROUP (A): 2.836 24.444 71.135 REMARK 3 T TENSOR REMARK 3 T11: 0.0767 T22: -0.0412 REMARK 3 T33: -0.0323 T12: 0.0107 REMARK 3 T13: -0.0545 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 0.0381 L22: 0.2321 REMARK 3 L33: 0.5162 L12: -0.0370 REMARK 3 L13: 0.1137 L23: 0.2430 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: 0.0026 S13: 0.0021 REMARK 3 S21: 0.0113 S22: 0.0095 S23: -0.0108 REMARK 3 S31: 0.0198 S32: 0.0037 S33: -0.0123 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REMARK 3 REFINEMENT. 4. HEPES, GLYCEROL, CHLORIDE MODELED ARE PRESENT IN REMARK 3 CRYO CONDITIONS. FAD AND NADP ARE LIGANDS OF THE PROTEIN REMARK 3 OBTAINED FROM THE EXPRESSION HOST. 5. NCS RESTRAINTS WERE REMARK 3 APPLIED USING BUSTER'S LSSR RESTRAINT REPRESENTATION (-AUTONCS) REMARK 3 6. THE DISULFIDE BOND BETWEEN CYS134 AND CYS137 WAS MODELED AS REMARK 3 PARTIALLY CLEAVED, LIKELY INDUCED BY RADIATION DAMAGE. REMARK 4 REMARK 4 4GCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074015. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE MARCH 15, 2012 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72528 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.591 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.77200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10.00% GLYCEROL, 1.26M TRI-SODIUM REMARK 280 CITRATE, 0.1M HEPES PH 7.5, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.33650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.97750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.32750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.97750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.33650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.32750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ALA A 311 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 311 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 143 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 166 -51.21 -120.12 REMARK 500 PHE B 166 -51.86 -121.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-423872 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4GCM A 1 311 UNP P66011 TRXB_STAAW 1 311 DBREF 4GCM B 1 311 UNP P66011 TRXB_STAAW 1 311 SEQADV 4GCM GLY A 0 UNP P66011 EXPRESSION TAG SEQADV 4GCM GLY B 0 UNP P66011 EXPRESSION TAG SEQRES 1 A 312 GLY MSE THR GLU ILE ASP PHE ASP ILE ALA ILE ILE GLY SEQRES 2 A 312 ALA GLY PRO ALA GLY MSE THR ALA ALA VAL TYR ALA SER SEQRES 3 A 312 ARG ALA ASN LEU LYS THR VAL MSE ILE GLU ARG GLY ILE SEQRES 4 A 312 PRO GLY GLY GLN MSE ALA ASN THR GLU GLU VAL GLU ASN SEQRES 5 A 312 PHE PRO GLY PHE GLU MSE ILE THR GLY PRO ASP LEU SER SEQRES 6 A 312 THR LYS MSE PHE GLU HIS ALA LYS LYS PHE GLY ALA VAL SEQRES 7 A 312 TYR GLN TYR GLY ASP ILE LYS SER VAL GLU ASP LYS GLY SEQRES 8 A 312 GLU TYR LYS VAL ILE ASN PHE GLY ASN LYS GLU LEU THR SEQRES 9 A 312 ALA LYS ALA VAL ILE ILE ALA THR GLY ALA GLU TYR LYS SEQRES 10 A 312 LYS ILE GLY VAL PRO GLY GLU GLN GLU LEU GLY GLY ARG SEQRES 11 A 312 GLY VAL SER TYR CYS ALA VAL CYS ASP GLY ALA PHE PHE SEQRES 12 A 312 LYS ASN LYS ARG LEU PHE VAL ILE GLY GLY GLY ASP SER SEQRES 13 A 312 ALA VAL GLU GLU GLY THR PHE LEU THR LYS PHE ALA ASP SEQRES 14 A 312 LYS VAL THR ILE VAL HIS ARG ARG ASP GLU LEU ARG ALA SEQRES 15 A 312 GLN ARG ILE LEU GLN ASP ARG ALA PHE LYS ASN ASP LYS SEQRES 16 A 312 ILE ASP PHE ILE TRP SER HIS THR LEU LYS SER ILE ASN SEQRES 17 A 312 GLU LYS ASP GLY LYS VAL GLY SER VAL THR LEU THR SER SEQRES 18 A 312 THR LYS ASP GLY SER GLU GLU THR HIS GLU ALA ASP GLY SEQRES 19 A 312 VAL PHE ILE TYR ILE GLY MSE LYS PRO LEU THR ALA PRO SEQRES 20 A 312 PHE LYS ASP LEU GLY ILE THR ASN ASP VAL GLY TYR ILE SEQRES 21 A 312 VAL THR LYS ASP ASP MSE THR THR SER VAL PRO GLY ILE SEQRES 22 A 312 PHE ALA ALA GLY ASP VAL ARG ASP LYS GLY LEU ARG GLN SEQRES 23 A 312 ILE VAL THR ALA THR GLY ASP GLY SER ILE ALA ALA GLN SEQRES 24 A 312 SER ALA ALA GLU TYR ILE GLU HIS LEU ASN ASP GLN ALA SEQRES 1 B 312 GLY MSE THR GLU ILE ASP PHE ASP ILE ALA ILE ILE GLY SEQRES 2 B 312 ALA GLY PRO ALA GLY MSE THR ALA ALA VAL TYR ALA SER SEQRES 3 B 312 ARG ALA ASN LEU LYS THR VAL MSE ILE GLU ARG GLY ILE SEQRES 4 B 312 PRO GLY GLY GLN MSE ALA ASN THR GLU GLU VAL GLU ASN SEQRES 5 B 312 PHE PRO GLY PHE GLU MSE ILE THR GLY PRO ASP LEU SER SEQRES 6 B 312 THR LYS MSE PHE GLU HIS ALA LYS LYS PHE GLY ALA VAL SEQRES 7 B 312 TYR GLN TYR GLY ASP ILE LYS SER VAL GLU ASP LYS GLY SEQRES 8 B 312 GLU TYR LYS VAL ILE ASN PHE GLY ASN LYS GLU LEU THR SEQRES 9 B 312 ALA LYS ALA VAL ILE ILE ALA THR GLY ALA GLU TYR LYS SEQRES 10 B 312 LYS ILE GLY VAL PRO GLY GLU GLN GLU LEU GLY GLY ARG SEQRES 11 B 312 GLY VAL SER TYR CYS ALA VAL CYS ASP GLY ALA PHE PHE SEQRES 12 B 312 LYS ASN LYS ARG LEU PHE VAL ILE GLY GLY GLY ASP SER SEQRES 13 B 312 ALA VAL GLU GLU GLY THR PHE LEU THR LYS PHE ALA ASP SEQRES 14 B 312 LYS VAL THR ILE VAL HIS ARG ARG ASP GLU LEU ARG ALA SEQRES 15 B 312 GLN ARG ILE LEU GLN ASP ARG ALA PHE LYS ASN ASP LYS SEQRES 16 B 312 ILE ASP PHE ILE TRP SER HIS THR LEU LYS SER ILE ASN SEQRES 17 B 312 GLU LYS ASP GLY LYS VAL GLY SER VAL THR LEU THR SER SEQRES 18 B 312 THR LYS ASP GLY SER GLU GLU THR HIS GLU ALA ASP GLY SEQRES 19 B 312 VAL PHE ILE TYR ILE GLY MSE LYS PRO LEU THR ALA PRO SEQRES 20 B 312 PHE LYS ASP LEU GLY ILE THR ASN ASP VAL GLY TYR ILE SEQRES 21 B 312 VAL THR LYS ASP ASP MSE THR THR SER VAL PRO GLY ILE SEQRES 22 B 312 PHE ALA ALA GLY ASP VAL ARG ASP LYS GLY LEU ARG GLN SEQRES 23 B 312 ILE VAL THR ALA THR GLY ASP GLY SER ILE ALA ALA GLN SEQRES 24 B 312 SER ALA ALA GLU TYR ILE GLU HIS LEU ASN ASP GLN ALA MODRES 4GCM MSE A 18 MET SELENOMETHIONINE MODRES 4GCM MSE A 33 MET SELENOMETHIONINE MODRES 4GCM MSE A 43 MET SELENOMETHIONINE MODRES 4GCM MSE A 57 MET SELENOMETHIONINE MODRES 4GCM MSE A 67 MET SELENOMETHIONINE MODRES 4GCM MSE A 240 MET SELENOMETHIONINE MODRES 4GCM MSE A 265 MET SELENOMETHIONINE MODRES 4GCM MSE B 18 MET SELENOMETHIONINE MODRES 4GCM MSE B 33 MET SELENOMETHIONINE MODRES 4GCM MSE B 43 MET SELENOMETHIONINE MODRES 4GCM MSE B 57 MET SELENOMETHIONINE MODRES 4GCM MSE B 67 MET SELENOMETHIONINE MODRES 4GCM MSE B 240 MET SELENOMETHIONINE MODRES 4GCM MSE B 265 MET SELENOMETHIONINE HET MSE A 18 8 HET MSE A 33 13 HET MSE A 43 8 HET MSE A 57 13 HET MSE A 67 8 HET MSE A 240 8 HET MSE A 265 8 HET MSE B 18 8 HET MSE B 33 13 HET MSE B 43 8 HET MSE B 57 13 HET MSE B 67 8 HET MSE B 240 8 HET MSE B 265 8 HET FAD A 401 53 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET CL A 405 1 HET FAD B 401 53 HET NAP B 402 48 HET EPE B 403 15 HET CL B 404 1 HETNAM MSE SELENOMETHIONINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EPE HEPES FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 CL 2(CL 1-) FORMUL 9 NAP C21 H28 N7 O17 P3 FORMUL 10 EPE C8 H18 N2 O4 S FORMUL 12 HOH *598(H2 O) HELIX 1 1 GLY A 14 ALA A 27 1 14 HELIX 2 2 GLY A 40 THR A 46 5 7 HELIX 3 3 THR A 59 PHE A 74 1 16 HELIX 4 4 CYS A 134 GLY A 139 1 6 HELIX 5 5 ALA A 140 LYS A 143 5 4 HELIX 6 6 GLY A 153 THR A 164 1 12 HELIX 7 7 GLN A 182 ASN A 192 1 11 HELIX 8 8 THR A 244 GLY A 251 5 8 HELIX 9 9 GLN A 285 GLN A 310 1 26 HELIX 10 10 GLY B 14 ALA B 27 1 14 HELIX 11 11 GLY B 40 THR B 46 5 7 HELIX 12 12 THR B 59 PHE B 74 1 16 HELIX 13 13 CYS B 134 GLY B 139 1 6 HELIX 14 14 ALA B 140 LYS B 143 5 4 HELIX 15 15 GLY B 153 THR B 164 1 12 HELIX 16 16 GLN B 182 ASN B 192 1 11 HELIX 17 17 THR B 244 GLY B 251 5 8 HELIX 18 18 GLN B 285 ASP B 309 1 25 SHEET 1 A 6 VAL A 77 TYR A 80 0 SHEET 2 A 6 THR A 31 GLU A 35 1 N THR A 31 O VAL A 77 SHEET 3 A 6 PHE A 6 ILE A 11 1 N ILE A 10 O VAL A 32 SHEET 4 A 6 GLU A 101 ILE A 109 1 O ILE A 108 N ILE A 11 SHEET 5 A 6 LYS A 93 ASN A 96 -1 N ILE A 95 O LEU A 102 SHEET 6 A 6 SER A 85 ASP A 88 -1 N SER A 85 O ASN A 96 SHEET 1 B 5 VAL A 77 TYR A 80 0 SHEET 2 B 5 THR A 31 GLU A 35 1 N THR A 31 O VAL A 77 SHEET 3 B 5 PHE A 6 ILE A 11 1 N ILE A 10 O VAL A 32 SHEET 4 B 5 GLU A 101 ILE A 109 1 O ILE A 108 N ILE A 11 SHEET 5 B 5 ILE A 272 ALA A 274 1 O PHE A 273 N ILE A 109 SHEET 1 C 2 ALA A 113 TYR A 115 0 SHEET 2 C 2 MSE A 240 PRO A 242 -1 O LYS A 241 N GLU A 114 SHEET 1 D 5 VAL A 131 SER A 132 0 SHEET 2 D 5 GLY A 233 ILE A 236 1 O VAL A 234 N SER A 132 SHEET 3 D 5 ARG A 146 ILE A 150 1 N ILE A 150 O PHE A 235 SHEET 4 D 5 LYS A 169 VAL A 173 1 O VAL A 173 N VAL A 149 SHEET 5 D 5 ILE A 195 ILE A 198 1 O ASP A 196 N ILE A 172 SHEET 1 E 3 HIS A 201 LYS A 209 0 SHEET 2 E 3 LYS A 212 SER A 220 -1 O GLY A 214 N ASN A 207 SHEET 3 E 3 GLU A 226 GLU A 230 -1 O GLU A 227 N LEU A 218 SHEET 1 F 6 VAL B 77 TYR B 80 0 SHEET 2 F 6 THR B 31 GLU B 35 1 N THR B 31 O VAL B 77 SHEET 3 F 6 PHE B 6 ILE B 11 1 N ILE B 10 O VAL B 32 SHEET 4 F 6 GLU B 101 ILE B 109 1 O ILE B 108 N ILE B 11 SHEET 5 F 6 LYS B 93 ASN B 96 -1 N ILE B 95 O LEU B 102 SHEET 6 F 6 SER B 85 ASP B 88 -1 N SER B 85 O ASN B 96 SHEET 1 G 5 VAL B 77 TYR B 80 0 SHEET 2 G 5 THR B 31 GLU B 35 1 N THR B 31 O VAL B 77 SHEET 3 G 5 PHE B 6 ILE B 11 1 N ILE B 10 O VAL B 32 SHEET 4 G 5 GLU B 101 ILE B 109 1 O ILE B 108 N ILE B 11 SHEET 5 G 5 ILE B 272 ALA B 274 1 O PHE B 273 N ILE B 109 SHEET 1 H 2 ALA B 113 TYR B 115 0 SHEET 2 H 2 MSE B 240 PRO B 242 -1 O LYS B 241 N GLU B 114 SHEET 1 I 5 VAL B 131 SER B 132 0 SHEET 2 I 5 GLY B 233 ILE B 236 1 O VAL B 234 N SER B 132 SHEET 3 I 5 ARG B 146 ILE B 150 1 N PHE B 148 O PHE B 235 SHEET 4 I 5 LYS B 169 VAL B 173 1 O VAL B 173 N VAL B 149 SHEET 5 I 5 ILE B 195 ILE B 198 1 O ILE B 198 N ILE B 172 SHEET 1 J 3 HIS B 201 LYS B 209 0 SHEET 2 J 3 LYS B 212 SER B 220 -1 O GLY B 214 N ASN B 207 SHEET 3 J 3 GLU B 226 GLU B 230 -1 O GLU B 227 N LEU B 218 SSBOND 1 CYS A 134 CYS A 137 1555 1555 2.03 SSBOND 2 CYS B 134 CYS B 137 1555 1555 2.03 LINK C GLY A 17 N MSE A 18 1555 1555 1.33 LINK C MSE A 18 N THR A 19 1555 1555 1.35 LINK C VAL A 32 N MSE A 33 1555 1555 1.34 LINK C MSE A 33 N ILE A 34 1555 1555 1.35 LINK C GLN A 42 N MSE A 43 1555 1555 1.38 LINK C MSE A 43 N ALA A 44 1555 1555 1.34 LINK C GLU A 56 N MSE A 57 1555 1555 1.34 LINK C MSE A 57 N ILE A 58 1555 1555 1.32 LINK C LYS A 66 N MSE A 67 1555 1555 1.34 LINK C MSE A 67 N PHE A 68 1555 1555 1.34 LINK C GLY A 239 N MSE A 240 1555 1555 1.32 LINK C MSE A 240 N LYS A 241 1555 1555 1.33 LINK C ASP A 264 N MSE A 265 1555 1555 1.34 LINK C MSE A 265 N THR A 266 1555 1555 1.34 LINK C GLY B 17 N MSE B 18 1555 1555 1.34 LINK C MSE B 18 N THR B 19 1555 1555 1.35 LINK C VAL B 32 N MSE B 33 1555 1555 1.34 LINK C MSE B 33 N ILE B 34 1555 1555 1.35 LINK C GLN B 42 N MSE B 43 1555 1555 1.36 LINK C MSE B 43 N ALA B 44 1555 1555 1.34 LINK C GLU B 56 N MSE B 57 1555 1555 1.34 LINK C MSE B 57 N ILE B 58 1555 1555 1.31 LINK C LYS B 66 N MSE B 67 1555 1555 1.36 LINK C MSE B 67 N PHE B 68 1555 1555 1.34 LINK C GLY B 239 N MSE B 240 1555 1555 1.34 LINK C MSE B 240 N LYS B 241 1555 1555 1.33 LINK C ASP B 264 N MSE B 265 1555 1555 1.33 LINK C MSE B 265 N THR B 266 1555 1555 1.35 SITE 1 AC1 33 GLY A 12 GLY A 14 PRO A 15 ALA A 16 SITE 2 AC1 33 GLU A 35 ARG A 36 GLY A 41 GLN A 42 SITE 3 AC1 33 THR A 46 ASN A 51 GLY A 81 ASP A 82 SITE 4 AC1 33 ILE A 83 ALA A 110 THR A 111 GLY A 112 SITE 5 AC1 33 CYS A 137 GLY A 276 ASP A 277 ARG A 284 SITE 6 AC1 33 GLN A 285 ILE A 286 ALA A 289 HOH A 501 SITE 7 AC1 33 HOH A 503 HOH A 504 HOH A 511 HOH A 520 SITE 8 AC1 33 HOH A 531 HOH A 536 HOH A 558 HOH A 575 SITE 9 AC1 33 HOH A 596 SITE 1 AC2 4 GLU A 159 PHE A 162 GLN B 298 GLU B 302 SITE 1 AC3 5 GLN A 298 GLU A 302 HOH A 623 GLU B 159 SITE 2 AC3 5 PHE B 162 SITE 1 AC4 4 ILE A 4 ASP A 7 LYS A 30 LYS A 105 SITE 1 AC5 5 GLN A 79 TYR A 80 HOH A 540 LYS B 72 SITE 2 AC5 5 HOH B 558 SITE 1 AC6 33 GLY B 12 GLY B 14 PRO B 15 ALA B 16 SITE 2 AC6 33 GLU B 35 ARG B 36 GLY B 41 GLN B 42 SITE 3 AC6 33 THR B 46 ASN B 51 GLY B 81 ASP B 82 SITE 4 AC6 33 ILE B 83 ALA B 110 THR B 111 GLY B 112 SITE 5 AC6 33 CYS B 137 GLY B 276 ASP B 277 ARG B 284 SITE 6 AC6 33 GLN B 285 ILE B 286 ALA B 289 HOH B 501 SITE 7 AC6 33 HOH B 502 HOH B 503 HOH B 509 HOH B 512 SITE 8 AC6 33 HOH B 516 HOH B 548 HOH B 549 HOH B 569 SITE 9 AC6 33 HOH B 604 SITE 1 AC7 22 ILE B 118 GLY B 152 GLY B 153 ASP B 154 SITE 2 AC7 22 SER B 155 GLU B 158 ARG B 175 ARG B 176 SITE 3 AC7 22 ARG B 180 GLN B 182 TYR B 237 ILE B 238 SITE 4 AC7 22 HOH B 519 HOH B 524 HOH B 542 HOH B 582 SITE 5 AC7 22 HOH B 592 HOH B 689 HOH B 716 HOH B 745 SITE 6 AC7 22 HOH B 773 HOH B 790 SITE 1 AC8 13 GLU A 226 ASP B 177 TRP B 199 LYS B 222 SITE 2 AC8 13 THR B 253 ASN B 254 ASP B 255 HOH B 584 SITE 3 AC8 13 HOH B 650 HOH B 657 HOH B 694 HOH B 717 SITE 4 AC8 13 HOH B 741 SITE 1 AC9 5 LYS A 72 GLN B 79 TYR B 80 HOH B 533 SITE 2 AC9 5 HOH B 585 CRYST1 58.673 90.655 145.955 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017044 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006851 0.00000