data_4GDZ # _entry.id 4GDZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GDZ pdb_00004gdz 10.2210/pdb4gdz/pdb RCSB RCSB074063 ? ? WWPDB D_1000074063 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-417693 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4GDZ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-08-01 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (BACEGG_02002) from Bacteroides eggerthii DSM 20697 at 1.95 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4GDZ _cell.length_a 125.801 _cell.length_b 125.801 _cell.length_c 125.801 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 24 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GDZ _symmetry.Int_Tables_number 213 _symmetry.space_group_name_H-M 'P 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 18888.527 1 ? ? 'UNP residues 23-196' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 4 water nat water 18.015 110 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GQESSTQRRADRKAQRDAERARLKAEQQAADAVSYDDAVAALKAQQFVLEANQV(MSE)FRNGQTAFVTSNTNFVLVNQG RGTVQVAFNTVYPGPNGIGGVTVDGTVSDIKTSTDKRGNINCSFSIQGIGISAQIFLTLTNGDNNATVTINPNFNSNT (MSE)TLSGSLLPLNQSNIFKGRSW ; _entity_poly.pdbx_seq_one_letter_code_can ;GQESSTQRRADRKAQRDAERARLKAEQQAADAVSYDDAVAALKAQQFVLEANQVMFRNGQTAFVTSNTNFVLVNQGRGTV QVAFNTVYPGPNGIGGVTVDGTVSDIKTSTDKRGNINCSFSIQGIGISAQIFLTLTNGDNNATVTINPNFNSNTMTLSGS LLPLNQSNIFKGRSW ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-417693 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 GLU n 1 4 SER n 1 5 SER n 1 6 THR n 1 7 GLN n 1 8 ARG n 1 9 ARG n 1 10 ALA n 1 11 ASP n 1 12 ARG n 1 13 LYS n 1 14 ALA n 1 15 GLN n 1 16 ARG n 1 17 ASP n 1 18 ALA n 1 19 GLU n 1 20 ARG n 1 21 ALA n 1 22 ARG n 1 23 LEU n 1 24 LYS n 1 25 ALA n 1 26 GLU n 1 27 GLN n 1 28 GLN n 1 29 ALA n 1 30 ALA n 1 31 ASP n 1 32 ALA n 1 33 VAL n 1 34 SER n 1 35 TYR n 1 36 ASP n 1 37 ASP n 1 38 ALA n 1 39 VAL n 1 40 ALA n 1 41 ALA n 1 42 LEU n 1 43 LYS n 1 44 ALA n 1 45 GLN n 1 46 GLN n 1 47 PHE n 1 48 VAL n 1 49 LEU n 1 50 GLU n 1 51 ALA n 1 52 ASN n 1 53 GLN n 1 54 VAL n 1 55 MSE n 1 56 PHE n 1 57 ARG n 1 58 ASN n 1 59 GLY n 1 60 GLN n 1 61 THR n 1 62 ALA n 1 63 PHE n 1 64 VAL n 1 65 THR n 1 66 SER n 1 67 ASN n 1 68 THR n 1 69 ASN n 1 70 PHE n 1 71 VAL n 1 72 LEU n 1 73 VAL n 1 74 ASN n 1 75 GLN n 1 76 GLY n 1 77 ARG n 1 78 GLY n 1 79 THR n 1 80 VAL n 1 81 GLN n 1 82 VAL n 1 83 ALA n 1 84 PHE n 1 85 ASN n 1 86 THR n 1 87 VAL n 1 88 TYR n 1 89 PRO n 1 90 GLY n 1 91 PRO n 1 92 ASN n 1 93 GLY n 1 94 ILE n 1 95 GLY n 1 96 GLY n 1 97 VAL n 1 98 THR n 1 99 VAL n 1 100 ASP n 1 101 GLY n 1 102 THR n 1 103 VAL n 1 104 SER n 1 105 ASP n 1 106 ILE n 1 107 LYS n 1 108 THR n 1 109 SER n 1 110 THR n 1 111 ASP n 1 112 LYS n 1 113 ARG n 1 114 GLY n 1 115 ASN n 1 116 ILE n 1 117 ASN n 1 118 CYS n 1 119 SER n 1 120 PHE n 1 121 SER n 1 122 ILE n 1 123 GLN n 1 124 GLY n 1 125 ILE n 1 126 GLY n 1 127 ILE n 1 128 SER n 1 129 ALA n 1 130 GLN n 1 131 ILE n 1 132 PHE n 1 133 LEU n 1 134 THR n 1 135 LEU n 1 136 THR n 1 137 ASN n 1 138 GLY n 1 139 ASP n 1 140 ASN n 1 141 ASN n 1 142 ALA n 1 143 THR n 1 144 VAL n 1 145 THR n 1 146 ILE n 1 147 ASN n 1 148 PRO n 1 149 ASN n 1 150 PHE n 1 151 ASN n 1 152 SER n 1 153 ASN n 1 154 THR n 1 155 MSE n 1 156 THR n 1 157 LEU n 1 158 SER n 1 159 GLY n 1 160 SER n 1 161 LEU n 1 162 LEU n 1 163 PRO n 1 164 LEU n 1 165 ASN n 1 166 GLN n 1 167 SER n 1 168 ASN n 1 169 ILE n 1 170 PHE n 1 171 LYS n 1 172 GLY n 1 173 ARG n 1 174 SER n 1 175 TRP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BACEGG_02002 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DSM 20697' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides eggerthii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 483216 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B7AHW8_9BACE _struct_ref.pdbx_db_accession B7AHW8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QESSTQRRADRKAQRDAERARLKAEQQAADAVSYDDAVAALKAQQFVLEANQVMFRNGQTAFVTSNTNFVLVNQGRGTVQ VAFNTVYPGPNGIGGVTVDGTVSDIKTSTDKRGNINCSFSIQGIGISAQIFLTLTNGDNNATVTINPNFNSNTMTLSGSL LPLNQSNIFKGRSW ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4GDZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 175 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B7AHW8 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 196 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 23 _struct_ref_seq.pdbx_auth_seq_align_end 196 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4GDZ _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code B7AHW8 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4GDZ # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 4.39 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 71.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '1.60M magnesium sulfate, 0.1M MES pH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Vertical focusing mirror; double crystal Si(111) monochromator' _diffrn_detector.pdbx_collection_date 2012-07-05 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL14-1 _diffrn_source.type 'SSRL BEAMLINE BL14-1' _diffrn_source.pdbx_wavelength 0.9792 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4GDZ _reflns.d_resolution_high 1.95 _reflns.d_resolution_low 28.861 _reflns.number_obs 25404 _reflns.pdbx_Rmerge_I_obs 0.064 _reflns.pdbx_netI_over_sigmaI 19.250 _reflns.percent_possible_obs 99.900 _reflns.B_iso_Wilson_estimate 39.124 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.950 2.020 41167 ? 4676 0.013 1.7 ? ? ? ? ? 99.800 1 1 2.020 2.100 41963 ? 4667 0.013 2.5 ? ? ? ? ? 100.000 2 1 2.100 2.200 43964 ? 4881 0.013 4.1 ? ? ? ? ? 100.000 3 1 2.200 2.310 40253 ? 4453 0.013 5.5 ? ? ? ? ? 100.000 4 1 2.310 2.460 43912 ? 4839 0.013 8.1 ? ? ? ? ? 100.000 5 1 2.460 2.650 42257 ? 4670 0.013 12.0 ? ? ? ? ? 99.900 6 1 2.650 2.910 41464 ? 4592 0.013 19.6 ? ? ? ? ? 100.000 7 1 2.910 3.330 42124 ? 4672 0.013 32.4 ? ? ? ? ? 99.900 8 1 3.330 4.190 41427 ? 4714 0.013 49.0 ? ? ? ? ? 100.000 9 1 4.190 28.861 40613 ? 4731 0.013 57.2 ? ? ? ? ? 99.200 10 1 # _refine.entry_id 4GDZ _refine.ls_d_res_high 1.9500 _refine.ls_d_res_low 28.861 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8400 _refine.ls_number_reflns_obs 25342 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 6. MAGNESIUM (MG) ION AND GLYCEROL (GOL) FROM THE CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1642 _refine.ls_R_factor_R_work 0.1631 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1838 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1292 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 61.1587 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc 0.9730 _refine.correlation_coeff_Fo_to_Fc_free 0.9660 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0840 _refine.pdbx_overall_ESU_R_Free 0.0840 _refine.overall_SU_ML 0.0580 _refine.overall_SU_B 4.1070 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 157.150 _refine.B_iso_min 40.950 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1107 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 110 _refine_hist.number_atoms_total 1236 _refine_hist.d_res_high 1.9500 _refine_hist.d_res_low 28.861 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1178 0.012 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 745 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1611 1.515 1.933 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1843 0.893 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 162 5.903 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 54 36.591 26.296 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 183 11.541 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 4 3.343 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 195 0.090 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1354 0.006 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 226 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.9500 _refine_ls_shell.d_res_low 2.0010 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.8800 _refine_ls_shell.number_reflns_R_work 1575 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2530 _refine_ls_shell.R_factor_R_free 0.3230 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1632 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a DUF4251 family protein (BACEGG_02002) from Bacteroides eggerthii DSM 20697 at 1.95 A resolution' _struct.entry_id 4GDZ _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.text ;PF14059 family protein, DUF4251, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 4GDZ # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details 'CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A TRIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 27 ? GLN A 45 ? GLN A 48 GLN A 66 1 ? 19 HELX_P HELX_P2 2 THR A 65 ? THR A 68 ? THR A 86 THR A 89 5 ? 4 HELX_P HELX_P3 3 GLY A 90 ? ASN A 92 ? GLY A 111 ASN A 113 5 ? 3 HELX_P HELX_P4 4 SER A 167 ? GLY A 172 ? SER A 188 GLY A 193 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A VAL 54 C ? ? ? 1_555 A MSE 55 N ? ? A VAL 75 A MSE 76 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A MSE 55 C ? ? ? 1_555 A PHE 56 N ? ? A MSE 76 A PHE 77 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale3 covale both ? A THR 154 C ? ? ? 1_555 A MSE 155 N ? ? A THR 175 A MSE 176 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A MSE 155 C ? ? ? 1_555 A THR 156 N ? ? A MSE 176 A THR 177 1_555 ? ? ? ? ? ? ? 1.330 ? ? metalc1 metalc ? ? A ASN 147 OD1 ? ? ? 1_555 B MG . MG ? ? A ASN 168 A MG 200 1_555 ? ? ? ? ? ? ? 2.349 ? ? metalc2 metalc ? ? A PRO 148 O ? ? ? 1_555 B MG . MG ? ? A PRO 169 A MG 200 1_555 ? ? ? ? ? ? ? 2.470 ? ? metalc3 metalc ? ? A ASN 151 O ? ? ? 1_555 B MG . MG ? ? A ASN 172 A MG 200 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc4 metalc ? ? A ASN 153 O ? ? ? 1_555 B MG . MG ? ? A ASN 174 A MG 200 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 200 A HOH 383 1_555 ? ? ? ? ? ? ? 2.636 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 61 ? PHE A 63 ? THR A 82 PHE A 84 A 2 GLN A 46 ? MSE A 55 ? GLN A 67 MSE A 76 A 3 MSE A 155 ? PRO A 163 ? MSE A 176 PRO A 184 A 4 ASN A 141 ? PRO A 148 ? ASN A 162 PRO A 169 A 5 SER A 128 ? LEU A 135 ? SER A 149 LEU A 156 A 6 ILE A 116 ? GLN A 123 ? ILE A 137 GLN A 144 A 7 ILE A 94 ? THR A 110 ? ILE A 115 THR A 131 A 8 ARG A 77 ? ASN A 85 ? ARG A 98 ASN A 106 A 9 PHE A 70 ? ASN A 74 ? PHE A 91 ASN A 95 A 10 GLN A 46 ? MSE A 55 ? GLN A 67 MSE A 76 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 62 ? O ALA A 83 N VAL A 54 ? N VAL A 75 A 2 3 N MSE A 55 ? N MSE A 76 O THR A 156 ? O THR A 177 A 3 4 O LEU A 157 ? O LEU A 178 N VAL A 144 ? N VAL A 165 A 4 5 O ASN A 147 ? O ASN A 168 N GLN A 130 ? N GLN A 151 A 5 6 O ILE A 131 ? O ILE A 152 N PHE A 120 ? N PHE A 141 A 6 7 O GLN A 123 ? O GLN A 144 N THR A 102 ? N THR A 123 A 7 8 O GLY A 101 ? O GLY A 122 N GLY A 78 ? N GLY A 99 A 8 9 O ARG A 77 ? O ARG A 98 N ASN A 74 ? N ASN A 95 A 9 10 O VAL A 71 ? O VAL A 92 N LEU A 49 ? N LEU A 70 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 200 ? 6 'BINDING SITE FOR RESIDUE MG A 200' AC2 Software A GOL 201 ? 3 'BINDING SITE FOR RESIDUE GOL A 201' AC3 Software A GOL 202 ? 7 'BINDING SITE FOR RESIDUE GOL A 202' AC4 Software A GOL 203 ? 4 'BINDING SITE FOR RESIDUE GOL A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASN A 147 ? ASN A 168 . ? 1_555 ? 2 AC1 6 PRO A 148 ? PRO A 169 . ? 1_555 ? 3 AC1 6 ASN A 151 ? ASN A 172 . ? 1_555 ? 4 AC1 6 SER A 152 ? SER A 173 . ? 1_555 ? 5 AC1 6 ASN A 153 ? ASN A 174 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH A 383 . ? 1_555 ? 7 AC2 3 SER A 104 ? SER A 125 . ? 1_555 ? 8 AC2 3 ASP A 105 ? ASP A 126 . ? 1_555 ? 9 AC2 3 ILE A 106 ? ILE A 127 . ? 1_555 ? 10 AC3 7 VAL A 54 ? VAL A 75 . ? 1_555 ? 11 AC3 7 MSE A 55 ? MSE A 76 . ? 1_555 ? 12 AC3 7 PHE A 84 ? PHE A 105 . ? 1_555 ? 13 AC3 7 ASN A 92 ? ASN A 113 . ? 1_555 ? 14 AC3 7 THR A 154 ? THR A 175 . ? 1_555 ? 15 AC3 7 MSE A 155 ? MSE A 176 . ? 1_555 ? 16 AC3 7 THR A 156 ? THR A 177 . ? 1_555 ? 17 AC4 4 ARG A 57 ? ARG A 78 . ? 1_555 ? 18 AC4 4 ARG A 57 ? ARG A 78 . ? 7_555 ? 19 AC4 4 THR A 154 ? THR A 175 . ? 7_555 ? 20 AC4 4 HOH F . ? HOH A 381 . ? 7_555 ? # _atom_sites.entry_id 4GDZ _atom_sites.fract_transf_matrix[1][1] 0.007949 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007949 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007949 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLN 2 23 ? ? ? A . n A 1 3 GLU 3 24 ? ? ? A . n A 1 4 SER 4 25 ? ? ? A . n A 1 5 SER 5 26 ? ? ? A . n A 1 6 THR 6 27 ? ? ? A . n A 1 7 GLN 7 28 ? ? ? A . n A 1 8 ARG 8 29 ? ? ? A . n A 1 9 ARG 9 30 ? ? ? A . n A 1 10 ALA 10 31 ? ? ? A . n A 1 11 ASP 11 32 ? ? ? A . n A 1 12 ARG 12 33 ? ? ? A . n A 1 13 LYS 13 34 ? ? ? A . n A 1 14 ALA 14 35 ? ? ? A . n A 1 15 GLN 15 36 ? ? ? A . n A 1 16 ARG 16 37 ? ? ? A . n A 1 17 ASP 17 38 ? ? ? A . n A 1 18 ALA 18 39 ? ? ? A . n A 1 19 GLU 19 40 ? ? ? A . n A 1 20 ARG 20 41 ? ? ? A . n A 1 21 ALA 21 42 ? ? ? A . n A 1 22 ARG 22 43 ? ? ? A . n A 1 23 LEU 23 44 ? ? ? A . n A 1 24 LYS 24 45 ? ? ? A . n A 1 25 ALA 25 46 ? ? ? A . n A 1 26 GLU 26 47 ? ? ? A . n A 1 27 GLN 27 48 48 GLN GLN A . n A 1 28 GLN 28 49 49 GLN GLN A . n A 1 29 ALA 29 50 50 ALA ALA A . n A 1 30 ALA 30 51 51 ALA ALA A . n A 1 31 ASP 31 52 52 ASP ASP A . n A 1 32 ALA 32 53 53 ALA ALA A . n A 1 33 VAL 33 54 54 VAL VAL A . n A 1 34 SER 34 55 55 SER SER A . n A 1 35 TYR 35 56 56 TYR TYR A . n A 1 36 ASP 36 57 57 ASP ASP A . n A 1 37 ASP 37 58 58 ASP ASP A . n A 1 38 ALA 38 59 59 ALA ALA A . n A 1 39 VAL 39 60 60 VAL VAL A . n A 1 40 ALA 40 61 61 ALA ALA A . n A 1 41 ALA 41 62 62 ALA ALA A . n A 1 42 LEU 42 63 63 LEU LEU A . n A 1 43 LYS 43 64 64 LYS LYS A . n A 1 44 ALA 44 65 65 ALA ALA A . n A 1 45 GLN 45 66 66 GLN GLN A . n A 1 46 GLN 46 67 67 GLN GLN A . n A 1 47 PHE 47 68 68 PHE PHE A . n A 1 48 VAL 48 69 69 VAL VAL A . n A 1 49 LEU 49 70 70 LEU LEU A . n A 1 50 GLU 50 71 71 GLU GLU A . n A 1 51 ALA 51 72 72 ALA ALA A . n A 1 52 ASN 52 73 73 ASN ASN A . n A 1 53 GLN 53 74 74 GLN GLN A . n A 1 54 VAL 54 75 75 VAL VAL A . n A 1 55 MSE 55 76 76 MSE MSE A . n A 1 56 PHE 56 77 77 PHE PHE A . n A 1 57 ARG 57 78 78 ARG ARG A . n A 1 58 ASN 58 79 79 ASN ASN A . n A 1 59 GLY 59 80 80 GLY GLY A . n A 1 60 GLN 60 81 81 GLN GLN A . n A 1 61 THR 61 82 82 THR THR A . n A 1 62 ALA 62 83 83 ALA ALA A . n A 1 63 PHE 63 84 84 PHE PHE A . n A 1 64 VAL 64 85 85 VAL VAL A . n A 1 65 THR 65 86 86 THR THR A . n A 1 66 SER 66 87 87 SER SER A . n A 1 67 ASN 67 88 88 ASN ASN A . n A 1 68 THR 68 89 89 THR THR A . n A 1 69 ASN 69 90 90 ASN ASN A . n A 1 70 PHE 70 91 91 PHE PHE A . n A 1 71 VAL 71 92 92 VAL VAL A . n A 1 72 LEU 72 93 93 LEU LEU A . n A 1 73 VAL 73 94 94 VAL VAL A . n A 1 74 ASN 74 95 95 ASN ASN A . n A 1 75 GLN 75 96 96 GLN GLN A . n A 1 76 GLY 76 97 97 GLY GLY A . n A 1 77 ARG 77 98 98 ARG ARG A . n A 1 78 GLY 78 99 99 GLY GLY A . n A 1 79 THR 79 100 100 THR THR A . n A 1 80 VAL 80 101 101 VAL VAL A . n A 1 81 GLN 81 102 102 GLN GLN A . n A 1 82 VAL 82 103 103 VAL VAL A . n A 1 83 ALA 83 104 104 ALA ALA A . n A 1 84 PHE 84 105 105 PHE PHE A . n A 1 85 ASN 85 106 106 ASN ASN A . n A 1 86 THR 86 107 107 THR THR A . n A 1 87 VAL 87 108 108 VAL VAL A . n A 1 88 TYR 88 109 109 TYR TYR A . n A 1 89 PRO 89 110 110 PRO PRO A . n A 1 90 GLY 90 111 111 GLY GLY A . n A 1 91 PRO 91 112 112 PRO PRO A . n A 1 92 ASN 92 113 113 ASN ASN A . n A 1 93 GLY 93 114 114 GLY GLY A . n A 1 94 ILE 94 115 115 ILE ILE A . n A 1 95 GLY 95 116 116 GLY GLY A . n A 1 96 GLY 96 117 117 GLY GLY A . n A 1 97 VAL 97 118 118 VAL VAL A . n A 1 98 THR 98 119 119 THR THR A . n A 1 99 VAL 99 120 120 VAL VAL A . n A 1 100 ASP 100 121 121 ASP ASP A . n A 1 101 GLY 101 122 122 GLY GLY A . n A 1 102 THR 102 123 123 THR THR A . n A 1 103 VAL 103 124 124 VAL VAL A . n A 1 104 SER 104 125 125 SER SER A . n A 1 105 ASP 105 126 126 ASP ASP A . n A 1 106 ILE 106 127 127 ILE ILE A . n A 1 107 LYS 107 128 128 LYS LYS A . n A 1 108 THR 108 129 129 THR THR A . n A 1 109 SER 109 130 130 SER SER A . n A 1 110 THR 110 131 131 THR THR A . n A 1 111 ASP 111 132 132 ASP ASP A . n A 1 112 LYS 112 133 133 LYS LYS A . n A 1 113 ARG 113 134 134 ARG ARG A . n A 1 114 GLY 114 135 135 GLY GLY A . n A 1 115 ASN 115 136 136 ASN ASN A . n A 1 116 ILE 116 137 137 ILE ILE A . n A 1 117 ASN 117 138 138 ASN ASN A . n A 1 118 CYS 118 139 139 CYS CYS A . n A 1 119 SER 119 140 140 SER SER A . n A 1 120 PHE 120 141 141 PHE PHE A . n A 1 121 SER 121 142 142 SER SER A . n A 1 122 ILE 122 143 143 ILE ILE A . n A 1 123 GLN 123 144 144 GLN GLN A . n A 1 124 GLY 124 145 145 GLY GLY A . n A 1 125 ILE 125 146 146 ILE ILE A . n A 1 126 GLY 126 147 147 GLY GLY A . n A 1 127 ILE 127 148 148 ILE ILE A . n A 1 128 SER 128 149 149 SER SER A . n A 1 129 ALA 129 150 150 ALA ALA A . n A 1 130 GLN 130 151 151 GLN GLN A . n A 1 131 ILE 131 152 152 ILE ILE A . n A 1 132 PHE 132 153 153 PHE PHE A . n A 1 133 LEU 133 154 154 LEU LEU A . n A 1 134 THR 134 155 155 THR THR A . n A 1 135 LEU 135 156 156 LEU LEU A . n A 1 136 THR 136 157 157 THR THR A . n A 1 137 ASN 137 158 158 ASN ASN A . n A 1 138 GLY 138 159 159 GLY GLY A . n A 1 139 ASP 139 160 160 ASP ASP A . n A 1 140 ASN 140 161 161 ASN ASN A . n A 1 141 ASN 141 162 162 ASN ASN A . n A 1 142 ALA 142 163 163 ALA ALA A . n A 1 143 THR 143 164 164 THR THR A . n A 1 144 VAL 144 165 165 VAL VAL A . n A 1 145 THR 145 166 166 THR THR A . n A 1 146 ILE 146 167 167 ILE ILE A . n A 1 147 ASN 147 168 168 ASN ASN A . n A 1 148 PRO 148 169 169 PRO PRO A . n A 1 149 ASN 149 170 170 ASN ASN A . n A 1 150 PHE 150 171 171 PHE PHE A . n A 1 151 ASN 151 172 172 ASN ASN A . n A 1 152 SER 152 173 173 SER SER A . n A 1 153 ASN 153 174 174 ASN ASN A . n A 1 154 THR 154 175 175 THR THR A . n A 1 155 MSE 155 176 176 MSE MSE A . n A 1 156 THR 156 177 177 THR THR A . n A 1 157 LEU 157 178 178 LEU LEU A . n A 1 158 SER 158 179 179 SER SER A . n A 1 159 GLY 159 180 180 GLY GLY A . n A 1 160 SER 160 181 181 SER SER A . n A 1 161 LEU 161 182 182 LEU LEU A . n A 1 162 LEU 162 183 183 LEU LEU A . n A 1 163 PRO 163 184 184 PRO PRO A . n A 1 164 LEU 164 185 185 LEU LEU A . n A 1 165 ASN 165 186 186 ASN ASN A . n A 1 166 GLN 166 187 187 GLN GLN A . n A 1 167 SER 167 188 188 SER SER A . n A 1 168 ASN 168 189 189 ASN ASN A . n A 1 169 ILE 169 190 190 ILE ILE A . n A 1 170 PHE 170 191 191 PHE PHE A . n A 1 171 LYS 171 192 192 LYS LYS A . n A 1 172 GLY 172 193 193 GLY GLY A . n A 1 173 ARG 173 194 194 ARG ARG A . n A 1 174 SER 174 195 195 SER SER A . n A 1 175 TRP 175 196 196 TRP TRP A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 200 200 MG MG A . C 3 GOL 1 201 201 GOL GOL A . D 3 GOL 1 202 202 GOL GOL A . E 3 GOL 1 203 203 GOL GOL A . F 4 HOH 1 301 204 HOH HOH A . F 4 HOH 2 302 205 HOH HOH A . F 4 HOH 3 303 206 HOH HOH A . F 4 HOH 4 304 207 HOH HOH A . F 4 HOH 5 305 208 HOH HOH A . F 4 HOH 6 306 209 HOH HOH A . F 4 HOH 7 307 210 HOH HOH A . F 4 HOH 8 308 211 HOH HOH A . F 4 HOH 9 309 212 HOH HOH A . F 4 HOH 10 310 213 HOH HOH A . F 4 HOH 11 311 214 HOH HOH A . F 4 HOH 12 312 215 HOH HOH A . F 4 HOH 13 313 216 HOH HOH A . F 4 HOH 14 314 217 HOH HOH A . F 4 HOH 15 315 218 HOH HOH A . F 4 HOH 16 316 219 HOH HOH A . F 4 HOH 17 317 220 HOH HOH A . F 4 HOH 18 318 221 HOH HOH A . F 4 HOH 19 319 222 HOH HOH A . F 4 HOH 20 320 223 HOH HOH A . F 4 HOH 21 321 224 HOH HOH A . F 4 HOH 22 322 225 HOH HOH A . F 4 HOH 23 323 226 HOH HOH A . F 4 HOH 24 324 227 HOH HOH A . F 4 HOH 25 325 228 HOH HOH A . F 4 HOH 26 326 229 HOH HOH A . F 4 HOH 27 327 230 HOH HOH A . F 4 HOH 28 328 231 HOH HOH A . F 4 HOH 29 329 232 HOH HOH A . F 4 HOH 30 330 233 HOH HOH A . F 4 HOH 31 331 234 HOH HOH A . F 4 HOH 32 332 235 HOH HOH A . F 4 HOH 33 333 236 HOH HOH A . F 4 HOH 34 334 237 HOH HOH A . F 4 HOH 35 335 238 HOH HOH A . F 4 HOH 36 336 239 HOH HOH A . F 4 HOH 37 337 240 HOH HOH A . F 4 HOH 38 338 241 HOH HOH A . F 4 HOH 39 339 242 HOH HOH A . F 4 HOH 40 340 243 HOH HOH A . F 4 HOH 41 341 244 HOH HOH A . F 4 HOH 42 342 245 HOH HOH A . F 4 HOH 43 343 246 HOH HOH A . F 4 HOH 44 344 247 HOH HOH A . F 4 HOH 45 345 248 HOH HOH A . F 4 HOH 46 346 249 HOH HOH A . F 4 HOH 47 347 250 HOH HOH A . F 4 HOH 48 348 251 HOH HOH A . F 4 HOH 49 349 252 HOH HOH A . F 4 HOH 50 350 253 HOH HOH A . F 4 HOH 51 351 254 HOH HOH A . F 4 HOH 52 352 255 HOH HOH A . F 4 HOH 53 353 256 HOH HOH A . F 4 HOH 54 354 257 HOH HOH A . F 4 HOH 55 355 258 HOH HOH A . F 4 HOH 56 356 259 HOH HOH A . F 4 HOH 57 357 260 HOH HOH A . F 4 HOH 58 358 261 HOH HOH A . F 4 HOH 59 359 262 HOH HOH A . F 4 HOH 60 360 263 HOH HOH A . F 4 HOH 61 361 264 HOH HOH A . F 4 HOH 62 362 265 HOH HOH A . F 4 HOH 63 363 266 HOH HOH A . F 4 HOH 64 364 267 HOH HOH A . F 4 HOH 65 365 268 HOH HOH A . F 4 HOH 66 366 269 HOH HOH A . F 4 HOH 67 367 270 HOH HOH A . F 4 HOH 68 368 271 HOH HOH A . F 4 HOH 69 369 272 HOH HOH A . F 4 HOH 70 370 273 HOH HOH A . F 4 HOH 71 371 274 HOH HOH A . F 4 HOH 72 372 275 HOH HOH A . F 4 HOH 73 373 276 HOH HOH A . F 4 HOH 74 374 277 HOH HOH A . F 4 HOH 75 375 278 HOH HOH A . F 4 HOH 76 376 279 HOH HOH A . F 4 HOH 77 377 280 HOH HOH A . F 4 HOH 78 378 281 HOH HOH A . F 4 HOH 79 379 282 HOH HOH A . F 4 HOH 80 380 283 HOH HOH A . F 4 HOH 81 381 284 HOH HOH A . F 4 HOH 82 382 285 HOH HOH A . F 4 HOH 83 383 286 HOH HOH A . F 4 HOH 84 384 287 HOH HOH A . F 4 HOH 85 385 288 HOH HOH A . F 4 HOH 86 386 289 HOH HOH A . F 4 HOH 87 387 290 HOH HOH A . F 4 HOH 88 388 291 HOH HOH A . F 4 HOH 89 389 292 HOH HOH A . F 4 HOH 90 390 293 HOH HOH A . F 4 HOH 91 391 294 HOH HOH A . F 4 HOH 92 392 295 HOH HOH A . F 4 HOH 93 393 296 HOH HOH A . F 4 HOH 94 394 297 HOH HOH A . F 4 HOH 95 395 298 HOH HOH A . F 4 HOH 96 396 299 HOH HOH A . F 4 HOH 97 397 300 HOH HOH A . F 4 HOH 98 398 301 HOH HOH A . F 4 HOH 99 399 302 HOH HOH A . F 4 HOH 100 400 303 HOH HOH A . F 4 HOH 101 401 304 HOH HOH A . F 4 HOH 102 402 305 HOH HOH A . F 4 HOH 103 403 306 HOH HOH A . F 4 HOH 104 404 307 HOH HOH A . F 4 HOH 105 405 308 HOH HOH A . F 4 HOH 106 406 309 HOH HOH A . F 4 HOH 107 407 310 HOH HOH A . F 4 HOH 108 408 311 HOH HOH A . F 4 HOH 109 409 312 HOH HOH A . F 4 HOH 110 410 313 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 55 A MSE 76 ? MET SELENOMETHIONINE 2 A MSE 155 A MSE 176 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6190 ? 1 MORE -21 ? 1 'SSA (A^2)' 20890 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 -z+1/2,-x,y+1/2 0.0000000000 0.0000000000 -1.0000000000 62.9005000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 62.9005000000 3 'crystal symmetry operation' 10_545 -y,z-1/2,-x+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -62.9005000000 -1.0000000000 0.0000000000 0.0000000000 62.9005000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 357 ? F HOH . 2 1 A HOH 382 ? F HOH . 3 1 A HOH 402 ? F HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASN 147 ? A ASN 168 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? A PRO 148 ? A PRO 169 ? 1_555 83.7 ? 2 OD1 ? A ASN 147 ? A ASN 168 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? A ASN 151 ? A ASN 172 ? 1_555 114.2 ? 3 O ? A PRO 148 ? A PRO 169 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? A ASN 151 ? A ASN 172 ? 1_555 84.9 ? 4 OD1 ? A ASN 147 ? A ASN 168 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? A ASN 153 ? A ASN 174 ? 1_555 91.8 ? 5 O ? A PRO 148 ? A PRO 169 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? A ASN 153 ? A ASN 174 ? 1_555 156.4 ? 6 O ? A ASN 151 ? A ASN 172 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? A ASN 153 ? A ASN 174 ? 1_555 117.7 ? 7 OD1 ? A ASN 147 ? A ASN 168 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? F HOH . ? A HOH 383 ? 1_555 156.2 ? 8 O ? A PRO 148 ? A PRO 169 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? F HOH . ? A HOH 383 ? 1_555 92.9 ? 9 O ? A ASN 151 ? A ASN 172 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? F HOH . ? A HOH 383 ? 1_555 88.9 ? 10 O ? A ASN 153 ? A ASN 174 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? F HOH . ? A HOH 383 ? 1_555 81.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-22 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_ref_seq_dif.details' 24 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 2.2810 _pdbx_refine_tls.origin_y 6.0640 _pdbx_refine_tls.origin_z 44.3740 _pdbx_refine_tls.T[1][1] 0.0779 _pdbx_refine_tls.T[2][2] 0.0288 _pdbx_refine_tls.T[3][3] 0.0896 _pdbx_refine_tls.T[1][2] 0.0073 _pdbx_refine_tls.T[1][3] 0.0456 _pdbx_refine_tls.T[2][3] 0.0136 _pdbx_refine_tls.L[1][1] 1.6743 _pdbx_refine_tls.L[2][2] 2.0009 _pdbx_refine_tls.L[3][3] 1.6816 _pdbx_refine_tls.L[1][2] 0.4664 _pdbx_refine_tls.L[1][3] -0.2991 _pdbx_refine_tls.L[2][3] -1.0100 _pdbx_refine_tls.S[1][1] 0.1877 _pdbx_refine_tls.S[2][2] 0.0478 _pdbx_refine_tls.S[3][3] -0.2356 _pdbx_refine_tls.S[1][2] -0.1131 _pdbx_refine_tls.S[1][3] 0.1583 _pdbx_refine_tls.S[2][3] 0.3883 _pdbx_refine_tls.S[2][1] 0.2355 _pdbx_refine_tls.S[3][1] -0.2032 _pdbx_refine_tls.S[3][2] -0.1292 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 48 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 196 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'March 15, 2012' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 REFMAC 5.6.0117 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4GDZ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 23-196 OF THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 96 ? ? 60.47 -120.78 2 1 ALA A 104 ? ? -162.01 109.05 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 49 ? CG ? A GLN 28 CG 2 1 Y 1 A GLN 49 ? CD ? A GLN 28 CD 3 1 Y 1 A GLN 49 ? OE1 ? A GLN 28 OE1 4 1 Y 1 A GLN 49 ? NE2 ? A GLN 28 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLN 23 ? A GLN 2 3 1 Y 1 A GLU 24 ? A GLU 3 4 1 Y 1 A SER 25 ? A SER 4 5 1 Y 1 A SER 26 ? A SER 5 6 1 Y 1 A THR 27 ? A THR 6 7 1 Y 1 A GLN 28 ? A GLN 7 8 1 Y 1 A ARG 29 ? A ARG 8 9 1 Y 1 A ARG 30 ? A ARG 9 10 1 Y 1 A ALA 31 ? A ALA 10 11 1 Y 1 A ASP 32 ? A ASP 11 12 1 Y 1 A ARG 33 ? A ARG 12 13 1 Y 1 A LYS 34 ? A LYS 13 14 1 Y 1 A ALA 35 ? A ALA 14 15 1 Y 1 A GLN 36 ? A GLN 15 16 1 Y 1 A ARG 37 ? A ARG 16 17 1 Y 1 A ASP 38 ? A ASP 17 18 1 Y 1 A ALA 39 ? A ALA 18 19 1 Y 1 A GLU 40 ? A GLU 19 20 1 Y 1 A ARG 41 ? A ARG 20 21 1 Y 1 A ALA 42 ? A ALA 21 22 1 Y 1 A ARG 43 ? A ARG 22 23 1 Y 1 A LEU 44 ? A LEU 23 24 1 Y 1 A LYS 45 ? A LYS 24 25 1 Y 1 A ALA 46 ? A ALA 25 26 1 Y 1 A GLU 47 ? A GLU 26 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 GLYCEROL GOL 4 water HOH #