HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 01-AUG-12 4GDZ TITLE CRYSTAL STRUCTURE OF A DUF4251 FAMILY PROTEIN (BACEGG_02002) FROM TITLE 2 BACTEROIDES EGGERTHII DSM 20697 AT 1.95 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-196; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES EGGERTHII; SOURCE 3 ORGANISM_TAXID: 483216; SOURCE 4 STRAIN: DSM 20697; SOURCE 5 GENE: BACEGG_02002; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PF14059 FAMILY PROTEIN, DUF4251, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 06-NOV-24 4GDZ 1 REMARK REVDAT 4 01-FEB-23 4GDZ 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4GDZ 1 REMARK REVDAT 2 24-DEC-14 4GDZ 1 TITLE REVDAT 1 22-AUG-12 4GDZ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BACEGG_02002) JRNL TITL 2 FROM BACTEROIDES EGGERTHII DSM 20697 AT 1.95 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1292 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1575 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1107 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.107 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1178 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 745 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1611 ; 1.515 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1843 ; 0.893 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 162 ; 5.903 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;36.591 ;26.296 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 183 ;11.541 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 3.343 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 195 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1354 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 226 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2810 6.0640 44.3740 REMARK 3 T TENSOR REMARK 3 T11: 0.0779 T22: 0.0288 REMARK 3 T33: 0.0896 T12: 0.0073 REMARK 3 T13: 0.0456 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.6743 L22: 2.0009 REMARK 3 L33: 1.6816 L12: 0.4664 REMARK 3 L13: -0.2991 L23: -1.0100 REMARK 3 S TENSOR REMARK 3 S11: 0.1877 S12: -0.1131 S13: 0.1583 REMARK 3 S21: 0.2355 S22: 0.0478 S23: 0.3883 REMARK 3 S31: -0.2032 S32: -0.1292 S33: -0.2356 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 6. MAGNESIUM (MG) ION AND GLYCEROL (GOL) FROM THE REMARK 3 CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE MODELED. REMARK 4 REMARK 4 4GDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE MARCH 15, 2012 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25404 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 28.861 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.01300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.60M MAGNESIUM SULFATE, 0.1M MES PH REMARK 280 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.90050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.90050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.90050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.90050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.90050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.90050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 62.90050 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 62.90050 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 62.90050 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 62.90050 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 62.90050 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 62.90050 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 62.90050 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 62.90050 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 62.90050 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 62.90050 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 62.90050 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 62.90050 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 94.35075 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 31.45025 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 31.45025 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 94.35075 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 94.35075 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 94.35075 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 31.45025 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 31.45025 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 94.35075 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 31.45025 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 94.35075 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 31.45025 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 94.35075 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 31.45025 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 31.45025 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 31.45025 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 94.35075 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 31.45025 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 94.35075 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 94.35075 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 94.35075 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 31.45025 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 31.45025 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 94.35075 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 94.35075 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 31.45025 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 31.45025 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 31.45025 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 31.45025 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 94.35075 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 31.45025 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 94.35075 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 31.45025 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 94.35075 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 94.35075 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 94.35075 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 TRIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 62.90050 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 62.90050 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 -62.90050 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 62.90050 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 357 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 382 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLN A 23 REMARK 465 GLU A 24 REMARK 465 SER A 25 REMARK 465 SER A 26 REMARK 465 THR A 27 REMARK 465 GLN A 28 REMARK 465 ARG A 29 REMARK 465 ARG A 30 REMARK 465 ALA A 31 REMARK 465 ASP A 32 REMARK 465 ARG A 33 REMARK 465 LYS A 34 REMARK 465 ALA A 35 REMARK 465 GLN A 36 REMARK 465 ARG A 37 REMARK 465 ASP A 38 REMARK 465 ALA A 39 REMARK 465 GLU A 40 REMARK 465 ARG A 41 REMARK 465 ALA A 42 REMARK 465 ARG A 43 REMARK 465 LEU A 44 REMARK 465 LYS A 45 REMARK 465 ALA A 46 REMARK 465 GLU A 47 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 49 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 96 -120.78 60.47 REMARK 500 ALA A 104 109.05 -162.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 168 OD1 REMARK 620 2 PRO A 169 O 83.7 REMARK 620 3 ASN A 172 O 114.2 84.9 REMARK 620 4 ASN A 174 O 91.8 156.4 117.7 REMARK 620 5 HOH A 383 O 156.2 92.9 88.9 81.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-417693 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 23-196 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4GDZ A 23 196 UNP B7AHW8 B7AHW8_9BACE 23 196 SEQADV 4GDZ GLY A 0 UNP B7AHW8 EXPRESSION TAG SEQRES 1 A 175 GLY GLN GLU SER SER THR GLN ARG ARG ALA ASP ARG LYS SEQRES 2 A 175 ALA GLN ARG ASP ALA GLU ARG ALA ARG LEU LYS ALA GLU SEQRES 3 A 175 GLN GLN ALA ALA ASP ALA VAL SER TYR ASP ASP ALA VAL SEQRES 4 A 175 ALA ALA LEU LYS ALA GLN GLN PHE VAL LEU GLU ALA ASN SEQRES 5 A 175 GLN VAL MSE PHE ARG ASN GLY GLN THR ALA PHE VAL THR SEQRES 6 A 175 SER ASN THR ASN PHE VAL LEU VAL ASN GLN GLY ARG GLY SEQRES 7 A 175 THR VAL GLN VAL ALA PHE ASN THR VAL TYR PRO GLY PRO SEQRES 8 A 175 ASN GLY ILE GLY GLY VAL THR VAL ASP GLY THR VAL SER SEQRES 9 A 175 ASP ILE LYS THR SER THR ASP LYS ARG GLY ASN ILE ASN SEQRES 10 A 175 CYS SER PHE SER ILE GLN GLY ILE GLY ILE SER ALA GLN SEQRES 11 A 175 ILE PHE LEU THR LEU THR ASN GLY ASP ASN ASN ALA THR SEQRES 12 A 175 VAL THR ILE ASN PRO ASN PHE ASN SER ASN THR MSE THR SEQRES 13 A 175 LEU SER GLY SER LEU LEU PRO LEU ASN GLN SER ASN ILE SEQRES 14 A 175 PHE LYS GLY ARG SER TRP MODRES 4GDZ MSE A 76 MET SELENOMETHIONINE MODRES 4GDZ MSE A 176 MET SELENOMETHIONINE HET MSE A 76 8 HET MSE A 176 13 HET MG A 200 1 HET GOL A 201 6 HET GOL A 202 6 HET GOL A 203 6 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *110(H2 O) HELIX 1 1 GLN A 48 GLN A 66 1 19 HELIX 2 2 THR A 86 THR A 89 5 4 HELIX 3 3 GLY A 111 ASN A 113 5 3 HELIX 4 4 SER A 188 GLY A 193 1 6 SHEET 1 A10 THR A 82 PHE A 84 0 SHEET 2 A10 GLN A 67 MSE A 76 -1 N VAL A 75 O ALA A 83 SHEET 3 A10 MSE A 176 PRO A 184 -1 O THR A 177 N MSE A 76 SHEET 4 A10 ASN A 162 PRO A 169 -1 N VAL A 165 O LEU A 178 SHEET 5 A10 SER A 149 LEU A 156 -1 N GLN A 151 O ASN A 168 SHEET 6 A10 ILE A 137 GLN A 144 -1 N PHE A 141 O ILE A 152 SHEET 7 A10 ILE A 115 THR A 131 -1 N THR A 123 O GLN A 144 SHEET 8 A10 ARG A 98 ASN A 106 -1 N GLY A 99 O GLY A 122 SHEET 9 A10 PHE A 91 ASN A 95 -1 N ASN A 95 O ARG A 98 SHEET 10 A10 GLN A 67 MSE A 76 -1 N LEU A 70 O VAL A 92 LINK C VAL A 75 N MSE A 76 1555 1555 1.33 LINK C MSE A 76 N PHE A 77 1555 1555 1.34 LINK C THR A 175 N MSE A 176 1555 1555 1.33 LINK C MSE A 176 N THR A 177 1555 1555 1.33 LINK OD1 ASN A 168 MG MG A 200 1555 1555 2.35 LINK O PRO A 169 MG MG A 200 1555 1555 2.47 LINK O ASN A 172 MG MG A 200 1555 1555 2.19 LINK O ASN A 174 MG MG A 200 1555 1555 2.32 LINK MG MG A 200 O HOH A 383 1555 1555 2.64 SITE 1 AC1 6 ASN A 168 PRO A 169 ASN A 172 SER A 173 SITE 2 AC1 6 ASN A 174 HOH A 383 SITE 1 AC2 3 SER A 125 ASP A 126 ILE A 127 SITE 1 AC3 7 VAL A 75 MSE A 76 PHE A 105 ASN A 113 SITE 2 AC3 7 THR A 175 MSE A 176 THR A 177 SITE 1 AC4 3 ARG A 78 THR A 175 HOH A 381 CRYST1 125.801 125.801 125.801 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007949 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007949 0.00000