HEADER OXIDOREDUCTASE/ELECTRON TRANSPORT 01-AUG-12 4GED TITLE CRYSTAL STRUCTURE OF THE LEISHMANIA MAJOR PEROXIDASE-CYTOCHROME C TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASCORBATE PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.11; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CYTOCHROME C; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PUTATIVE CYTOCHROME C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 GENE: APX, LMJF_34_0070; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPAL7; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 12 ORGANISM_TAXID: 5664; SOURCE 13 GENE: LMJF_16_1310, LMJF_16_1320; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PBPCYC1 KEYWDS ALPHA HELICAL BUNDLE, HEME PEROXIDASE, CYTOCHROME C PEROXIDASE, KEYWDS 2 OXIDOREDUCTASE-ELECTRON TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR V.S.JASION,T.DOUKOV,S.H.PINEDA,H.LI,T.L.POULOS REVDAT 4 13-SEP-23 4GED 1 REMARK SEQADV LINK REVDAT 3 21-NOV-12 4GED 1 JRNL REVDAT 2 07-NOV-12 4GED 1 JRNL REVDAT 1 24-OCT-12 4GED 0 JRNL AUTH V.S.JASION,T.DOUKOV,S.H.PINEDA,H.LI,T.L.POULOS JRNL TITL CRYSTAL STRUCTURE OF THE LEISHMANIA MAJOR JRNL TITL 2 PEROXIDASE-CYTOCHROME C COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 18390 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23100535 JRNL DOI 10.1073/PNAS.1213295109 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 35729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1797 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.89 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.41 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2172 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2164 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2067 REMARK 3 BIN R VALUE (WORKING SET) : 0.2155 REMARK 3 BIN FREE R VALUE : 0.2351 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.83 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 105 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2909 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.96300 REMARK 3 B22 (A**2) : -6.96300 REMARK 3 B33 (A**2) : 13.92600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.307 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.192 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6178 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 11202 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1696 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 124 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1120 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6178 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 385 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6282 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.91 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.17 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.95 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 34 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): -45.1084 13.9261 17.8589 REMARK 3 T TENSOR REMARK 3 T11: -0.2688 T22: -0.2446 REMARK 3 T33: 0.3242 T12: -0.0122 REMARK 3 T13: 0.0191 T23: -0.0914 REMARK 3 L TENSOR REMARK 3 L11: 2.7160 L22: 1.6792 REMARK 3 L33: 1.2039 L12: 0.2021 REMARK 3 L13: -0.1950 L23: 0.3140 REMARK 3 S TENSOR REMARK 3 S11: -0.1109 S12: 0.0758 S13: -0.2972 REMARK 3 S21: 0.0313 S22: -0.0937 S23: 0.2953 REMARK 3 S31: -0.0195 S32: -0.2192 S33: 0.2046 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: B 12 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): -30.5802 -9.9669 12.2203 REMARK 3 T TENSOR REMARK 3 T11: -0.2903 T22: -0.3553 REMARK 3 T33: 0.4503 T12: 0.0050 REMARK 3 T13: 0.0309 T23: -0.0614 REMARK 3 L TENSOR REMARK 3 L11: 8.4309 L22: 4.7466 REMARK 3 L33: 1.9855 L12: 1.3585 REMARK 3 L13: -0.4894 L23: 0.5104 REMARK 3 S TENSOR REMARK 3 S11: -0.0665 S12: 0.1350 S13: -0.2642 REMARK 3 S21: -0.1918 S22: 0.2271 S23: -0.2848 REMARK 3 S31: 0.1460 S32: 0.0799 S33: -0.1605 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL SI (111) REMARK 200 OPTICS : RH COATED K-B FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36729 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 37.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : 0.03300 REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 1.41100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3RIV, 4DY9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32-33% PENTAERYTHRITOL ETHOXYLATE, 4% REMARK 280 ACETONE, 40 MM POTASSIUM PHOSPHATE BUFFER, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 74.87500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 74.87500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.21000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 74.87500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 74.87500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.21000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 74.87500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.87500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.21000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 74.87500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.87500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.21000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 PRO B 3 REMARK 465 LYS B 4 REMARK 465 ALA B 5 REMARK 465 ARG B 6 REMARK 465 ALA B 7 REMARK 465 PRO B 8 REMARK 465 LEU B 9 REMARK 465 PRO B 10 REMARK 465 PRO B 11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 55 88.02 -150.01 REMARK 500 THR A 167 -158.07 -121.60 REMARK 500 ASN A 294 59.99 34.93 REMARK 500 ASN B 81 88.53 -160.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 69 OE2 REMARK 620 2 GLU A 69 O 69.9 REMARK 620 3 SER A 72 OG 143.5 79.9 REMARK 620 4 SER A 81 O 72.7 94.6 90.4 REMARK 620 5 SER A 86 OG 76.6 146.5 131.1 75.5 REMARK 620 6 GLU A 92 OE2 121.7 116.6 89.6 148.3 80.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 192 NE2 REMARK 620 2 HEM A 401 NA 94.8 REMARK 620 3 HEM A 401 NB 88.3 88.6 REMARK 620 4 HEM A 401 NC 89.6 175.6 91.2 REMARK 620 5 HEM A 401 ND 91.2 90.4 178.9 89.8 REMARK 620 6 HOH A 501 O 169.5 88.9 81.9 86.7 98.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 193 O REMARK 620 2 THR A 193 OG1 71.5 REMARK 620 3 THR A 209 OG1 63.5 106.1 REMARK 620 4 ASP A 211 O 88.6 157.4 72.5 REMARK 620 5 GLY A 214 O 86.9 89.5 138.5 78.8 REMARK 620 6 SER A 218 OG 108.3 63.0 79.4 136.1 140.2 REMARK 620 7 HOH A 569 O 176.4 109.1 119.3 90.2 89.5 74.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 29 NE2 REMARK 620 2 HEC B 201 NA 94.5 REMARK 620 3 HEC B 201 NB 90.0 90.0 REMARK 620 4 HEC B 201 NC 85.5 179.1 89.0 REMARK 620 5 HEC B 201 ND 89.5 89.1 179.0 91.8 REMARK 620 6 MET B 91 SD 172.9 84.6 97.1 95.5 83.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RIV RELATED DB: PDB REMARK 900 RELATED ID: 4DY9 RELATED DB: PDB DBREF 4GED A 35 301 UNP Q4Q3K2 Q4Q3K2_LEIMA 35 301 DBREF 4GED B 1 113 UNP Q4QEN5 Q4QEN5_LEIMA 1 113 SEQADV 4GED SER A 34 UNP Q4Q3K2 EXPRESSION TAG SEQRES 1 A 268 SER GLU GLU PRO PRO PHE ASP ILE ARG ALA LEU ARG ALA SEQRES 2 A 268 ASP ILE GLU ASP MET ILE SER GLU LYS LEU GLU LEU GLY SEQRES 3 A 268 PRO SER LEU ILE ARG LEU ALA TRP HIS GLU ALA ALA SER SEQRES 4 A 268 TYR ASP CYS PHE LYS LYS ASP GLY SER PRO ASN SER ALA SEQRES 5 A 268 SER MET ARG PHE LYS PRO GLU CYS LEU TYR ALA GLY ASN SEQRES 6 A 268 LYS GLY LEU ASP ILE PRO ARG LYS ALA LEU GLU THR LEU SEQRES 7 A 268 LYS LYS LYS TYR PRO GLN ILE SER TYR ALA ASP LEU TRP SEQRES 8 A 268 VAL LEU ALA ALA TYR VAL ALA ILE GLU TYR MET GLY GLY SEQRES 9 A 268 PRO THR ILE PRO PHE CYS TRP GLY ARG VAL ASP ALA LYS SEQRES 10 A 268 ASP GLY SER VAL CYS GLY PRO ASP GLY ARG LEU PRO ASP SEQRES 11 A 268 GLY SER LYS THR GLN SER HIS VAL ARG GLU VAL PHE ARG SEQRES 12 A 268 ARG LEU GLY PHE ASN ASP GLN GLU THR VAL ALA LEU ILE SEQRES 13 A 268 GLY ALA HIS THR CYS GLY GLU CYS HIS ILE GLU PHE SER SEQRES 14 A 268 GLY TYR HIS GLY PRO TRP THR HIS ASP LYS ASN GLY PHE SEQRES 15 A 268 ASP ASN SER PHE PHE THR GLN LEU LEU ASP GLU ASP TRP SEQRES 16 A 268 VAL LEU ASN PRO LYS VAL GLU GLN MET GLN LEU MET ASP SEQRES 17 A 268 ARG ALA THR THR LYS LEU MET MET LEU PRO SER ASP VAL SEQRES 18 A 268 CYS LEU LEU LEU ASP PRO SER TYR ARG LYS TYR VAL GLU SEQRES 19 A 268 LEU TYR ALA LYS ASP ASN ASP ARG PHE ASN LYS ASP PHE SEQRES 20 A 268 ALA ASN ALA PHE LYS LYS LEU THR GLU LEU GLY THR ARG SEQRES 21 A 268 ASN LEU HIS LYS ALA PRO ALA SER SEQRES 1 B 113 MET PRO PRO LYS ALA ARG ALA PRO LEU PRO PRO GLY ASP SEQRES 2 B 113 VAL GLU ARG GLY GLU LYS LEU PHE LYS GLY ARG ALA ALA SEQRES 3 B 113 GLN CYS HIS THR ALA THR LYS GLY GLY SER ASN GLY VAL SEQRES 4 B 113 GLY PRO ASN LEU PHE GLY ILE VAL ASN ARG PRO SER GLY SEQRES 5 B 113 LYS VAL GLU GLY PHE THR TYR SER LYS ALA ASN ALA GLU SEQRES 6 B 113 SER GLY VAL ILE TRP THR PRO GLU VAL LEU ASP VAL TYR SEQRES 7 B 113 LEU GLU ASN PRO LYS LYS PHE MET PRO GLY THR LYS MET SEQRES 8 B 113 SER PHE ALA GLY ILE LYS LYS PRO GLN GLU ARG ALA ASP SEQRES 9 B 113 VAL ILE ALA TYR LEU GLU THR LEU LYS HET HEM A 401 43 HET K A 402 1 HET MG A 403 1 HET HEC B 201 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM K POTASSIUM ION HETNAM MG MAGNESIUM ION HETNAM HEC HEME C HETSYN HEM HEME FORMUL 3 HEM C34 H32 FE N4 O4 FORMUL 4 K K 1+ FORMUL 5 MG MG 2+ FORMUL 6 HEC C34 H34 FE N4 O4 FORMUL 7 HOH *230(H2 O) HELIX 1 1 ASP A 40 LYS A 55 1 16 HELIX 2 2 GLU A 57 ALA A 71 1 15 HELIX 3 3 ALA A 85 PHE A 89 5 5 HELIX 4 4 PRO A 91 LYS A 99 5 9 HELIX 5 5 LEU A 101 TYR A 115 1 15 HELIX 6 6 SER A 119 MET A 135 1 17 HELIX 7 7 ASP A 151 CYS A 155 5 5 HELIX 8 8 THR A 167 GLY A 179 1 13 HELIX 9 9 ASN A 181 GLY A 190 1 10 HELIX 10 10 ALA A 191 CYS A 194 5 4 HELIX 11 11 HIS A 198 GLY A 203 1 6 HELIX 12 12 ASN A 217 GLU A 226 1 10 HELIX 13 13 LEU A 250 ASP A 259 1 10 HELIX 14 14 ASP A 259 ASP A 272 1 14 HELIX 15 15 ASP A 272 THR A 288 1 17 HELIX 16 16 ASP B 13 ALA B 25 1 13 HELIX 17 17 SER B 60 SER B 66 1 7 HELIX 18 18 THR B 71 ASN B 81 1 11 HELIX 19 19 ASN B 81 MET B 86 1 6 HELIX 20 20 LYS B 98 THR B 111 1 14 SHEET 1 A 2 CYS A 143 TRP A 144 0 SHEET 2 A 2 HIS A 296 LYS A 297 -1 O HIS A 296 N TRP A 144 SHEET 1 B 2 GLU A 196 CYS A 197 0 SHEET 2 B 2 GLY A 206 PRO A 207 -1 O GLY A 206 N CYS A 197 SHEET 1 C 3 TRP A 228 LEU A 230 0 SHEET 2 C 3 LEU A 239 ASP A 241 -1 O MET A 240 N VAL A 229 SHEET 3 C 3 MET A 248 MET A 249 -1 O MET A 249 N LEU A 239 LINK SG CYS B 28 CAC HEC B 201 1555 1555 1.84 LINK OE2 GLU A 69 MG MG A 403 1555 1555 2.66 LINK O GLU A 69 MG MG A 403 1555 1555 2.73 LINK OG SER A 72 MG MG A 403 1555 1555 2.90 LINK O SER A 81 MG MG A 403 1555 1555 2.92 LINK OG SER A 86 MG MG A 403 1555 1555 2.69 LINK OE2 GLU A 92 MG MG A 403 1555 1555 2.83 LINK NE2 HIS A 192 FE HEM A 401 1555 1555 2.20 LINK O THR A 193 K K A 402 1555 1555 2.51 LINK OG1 THR A 193 K K A 402 1555 1555 2.77 LINK OG1 THR A 209 K K A 402 1555 1555 3.06 LINK O ASP A 211 K K A 402 1555 1555 2.65 LINK O GLY A 214 K K A 402 1555 1555 2.72 LINK OG SER A 218 K K A 402 1555 1555 3.04 LINK FE HEM A 401 O HOH A 501 1555 1555 2.17 LINK K K A 402 O HOH A 569 1555 1555 2.84 LINK NE2 HIS B 29 FE HEC B 201 1555 1555 2.10 LINK SD MET B 91 FE HEC B 201 1555 1555 2.41 CISPEP 1 LYS A 90 PRO A 91 0 2.45 SITE 1 AC1 18 PRO A 60 TRP A 67 PRO A 162 LEU A 188 SITE 2 AC1 18 ALA A 191 HIS A 192 GLY A 195 GLU A 196 SITE 3 AC1 18 CYS A 197 HIS A 198 PHE A 201 SER A 202 SITE 4 AC1 18 TRP A 208 SER A 252 HOH A 501 HOH A 512 SITE 5 AC1 18 HOH A 561 HOH A 663 SITE 1 AC2 7 THR A 193 THR A 209 ASP A 211 GLY A 214 SITE 2 AC2 7 ASP A 216 SER A 218 HOH A 569 SITE 1 AC3 6 GLU A 69 SER A 72 GLY A 80 SER A 81 SITE 2 AC3 6 SER A 86 GLU A 92 SITE 1 AC4 22 ARG B 24 ALA B 25 CYS B 28 HIS B 29 SITE 2 AC4 22 VAL B 39 ILE B 46 SER B 51 GLY B 52 SITE 3 AC4 22 VAL B 54 TYR B 59 SER B 60 ASN B 63 SITE 4 AC4 22 TRP B 70 LEU B 75 LEU B 79 THR B 89 SITE 5 AC4 22 LYS B 90 MET B 91 SER B 92 PHE B 93 SITE 6 AC4 22 ILE B 96 HOH B 302 CRYST1 149.750 149.750 36.420 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006678 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027457 0.00000