HEADER PROTEIN BINDING, IMMUNE SYSTEM 03-AUG-12 4GFT TITLE MALARIA INVASION MACHINERY PROTEIN-NANOBODY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN A TAIL DOMAIN INTERACTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 137-204); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NANOBODY; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: MTIP, PFL2225W; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 11 ORGANISM_TAXID: 9844; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PET22B KEYWDS MALARIA INVASION MACHINERY PROTEIN, PROTEIN BINDING, MTIP, MYOA TAIL KEYWDS 2 INTERACTING PROTEIN, IMMUNE SYSTEM, NANOBODY EXPDTA X-RAY DIFFRACTION AUTHOR S.KHAMRUI,S.TURLEY,E.PARDON,J.STEYAERT,C.VERLINDE,E.FAN,L.W.BERGMAN, AUTHOR 2 W.G.J.HOL REVDAT 5 09-OCT-24 4GFT 1 REMARK REVDAT 4 25-DEC-19 4GFT 1 SEQADV SEQRES LINK REVDAT 3 09-DEC-15 4GFT 1 JRNL REVDAT 2 24-JUL-13 4GFT 1 REMARK REVDAT 1 03-JUL-13 4GFT 0 JRNL AUTH S.KHAMRUI,S.TURLEY,E.PARDON,J.STEYAERT,E.FAN,C.L.VERLINDE, JRNL AUTH 2 L.W.BERGMAN,W.G.HOL JRNL TITL THE STRUCTURE OF THE D3 DOMAIN OF PLASMODIUM FALCIPARUM JRNL TITL 2 MYOSIN TAIL INTERACTING PROTEIN MTIP IN COMPLEX WITH A JRNL TITL 3 NANOBODY. JRNL REF MOL.BIOCHEM.PARASITOL. V. 190 87 2013 JRNL REFN ISSN 0166-6851 JRNL PMID 23831371 JRNL DOI 10.1016/J.MOLBIOPARA.2013.06.003 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 23568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1261 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1586 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1440 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : -0.81000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.443 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1483 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1342 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2009 ; 1.567 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3069 ; 0.841 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 190 ; 5.999 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 68 ;29.878 ;24.559 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 227 ;13.706 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;19.751 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 219 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1738 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 363 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8120 -11.0770 -38.6780 REMARK 3 T TENSOR REMARK 3 T11: 1.3450 T22: 0.6386 REMARK 3 T33: 0.2433 T12: -0.7306 REMARK 3 T13: 0.1676 T23: -0.1408 REMARK 3 L TENSOR REMARK 3 L11: 17.8951 L22: 72.7680 REMARK 3 L33: 14.4969 L12: 25.5397 REMARK 3 L13: -12.7925 L23: -11.4190 REMARK 3 S TENSOR REMARK 3 S11: -2.6989 S12: 2.0771 S13: -1.0044 REMARK 3 S21: -2.7725 S22: 1.7675 S23: 1.0269 REMARK 3 S31: 3.4054 S32: -2.3143 S33: 0.9314 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 164 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3490 -1.0270 -39.1300 REMARK 3 T TENSOR REMARK 3 T11: 0.0980 T22: 0.0836 REMARK 3 T33: 0.0351 T12: -0.0124 REMARK 3 T13: 0.0365 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 3.0570 L22: 3.9667 REMARK 3 L33: 8.6707 L12: 0.1034 REMARK 3 L13: -4.6644 L23: -1.5978 REMARK 3 S TENSOR REMARK 3 S11: -0.2169 S12: 0.0681 S13: -0.0539 REMARK 3 S21: -0.2878 S22: 0.0697 S23: -0.0097 REMARK 3 S31: 0.5170 S32: -0.1695 S33: 0.1472 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 165 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0720 -0.9290 -35.1710 REMARK 3 T TENSOR REMARK 3 T11: 0.2031 T22: 0.2430 REMARK 3 T33: 0.6977 T12: -0.0456 REMARK 3 T13: -0.2640 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 66.2545 L22: 32.3874 REMARK 3 L33: 63.1004 L12: 4.2016 REMARK 3 L13: 1.3895 L23: 16.9829 REMARK 3 S TENSOR REMARK 3 S11: 0.8558 S12: 0.3976 S13: 0.4604 REMARK 3 S21: -1.6865 S22: -0.4687 S23: 4.0740 REMARK 3 S31: 0.6773 S32: -0.8778 S33: -0.3870 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0230 -7.4620 -35.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.4623 T22: 0.7443 REMARK 3 T33: 0.8993 T12: -0.2178 REMARK 3 T13: 0.0855 T23: 0.0861 REMARK 3 L TENSOR REMARK 3 L11: 55.0782 L22: 50.0912 REMARK 3 L33: 43.8325 L12: 49.3187 REMARK 3 L13: -10.1084 L23: 6.7246 REMARK 3 S TENSOR REMARK 3 S11: -1.5020 S12: 0.7941 S13: -1.1740 REMARK 3 S21: -0.4057 S22: -0.1917 S23: -0.5061 REMARK 3 S31: 2.7827 S32: -2.4906 S33: 1.6937 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4580 -2.6530 -27.2190 REMARK 3 T TENSOR REMARK 3 T11: 0.1213 T22: 0.0769 REMARK 3 T33: 0.0495 T12: 0.0070 REMARK 3 T13: -0.0075 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 5.0411 L22: 33.9299 REMARK 3 L33: 23.0047 L12: 1.7790 REMARK 3 L13: 9.4253 L23: 1.7399 REMARK 3 S TENSOR REMARK 3 S11: 0.3974 S12: -0.0479 S13: -0.1715 REMARK 3 S21: -0.9698 S22: -0.2487 S23: 0.4128 REMARK 3 S31: 1.1037 S32: -0.1378 S33: -0.1487 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 179 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0560 -1.4200 -24.8200 REMARK 3 T TENSOR REMARK 3 T11: 0.0493 T22: 0.0810 REMARK 3 T33: 0.0358 T12: 0.0272 REMARK 3 T13: 0.0123 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 7.1377 L22: 2.3035 REMARK 3 L33: 4.3455 L12: 1.3660 REMARK 3 L13: -0.5209 L23: 0.2000 REMARK 3 S TENSOR REMARK 3 S11: -0.0926 S12: -0.1158 S13: -0.0396 REMARK 3 S21: -0.0720 S22: 0.1019 S23: -0.1575 REMARK 3 S31: -0.0787 S32: 0.2903 S33: -0.0093 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 190 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7990 2.7960 -30.0590 REMARK 3 T TENSOR REMARK 3 T11: 0.1418 T22: 0.1270 REMARK 3 T33: 0.1033 T12: -0.0090 REMARK 3 T13: -0.0343 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 16.7116 L22: 12.8872 REMARK 3 L33: 26.1219 L12: -5.3034 REMARK 3 L13: -12.1923 L23: 6.3749 REMARK 3 S TENSOR REMARK 3 S11: 0.1013 S12: -0.7317 S13: 0.8704 REMARK 3 S21: 0.6528 S22: -0.0294 S23: -0.3377 REMARK 3 S31: -0.7108 S32: 0.8818 S33: -0.0720 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1640 -9.7080 -30.4100 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.1040 REMARK 3 T33: 0.1039 T12: 0.0480 REMARK 3 T13: 0.0547 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 6.6336 L22: 9.9107 REMARK 3 L33: 14.8256 L12: 3.6708 REMARK 3 L13: -8.2629 L23: -7.0357 REMARK 3 S TENSOR REMARK 3 S11: -0.4136 S12: 0.0061 S13: -0.2736 REMARK 3 S21: -0.4264 S22: -0.0097 S23: -0.3128 REMARK 3 S31: 0.8406 S32: 0.1735 S33: 0.4233 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 12 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9370 -8.1930 -6.9450 REMARK 3 T TENSOR REMARK 3 T11: 0.0821 T22: 0.0630 REMARK 3 T33: 0.0268 T12: 0.0019 REMARK 3 T13: 0.0096 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.3213 L22: 2.1961 REMARK 3 L33: 16.0393 L12: -0.1945 REMARK 3 L13: 2.3240 L23: -3.7419 REMARK 3 S TENSOR REMARK 3 S11: -0.0468 S12: -0.1127 S13: 0.0074 REMARK 3 S21: 0.1828 S22: 0.0698 S23: 0.0978 REMARK 3 S31: -0.1472 S32: -0.1548 S33: -0.0230 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 19 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2700 -21.5380 7.2460 REMARK 3 T TENSOR REMARK 3 T11: 0.2351 T22: 0.1349 REMARK 3 T33: 0.0771 T12: -0.0220 REMARK 3 T13: -0.0777 T23: 0.0684 REMARK 3 L TENSOR REMARK 3 L11: 23.6443 L22: 3.8731 REMARK 3 L33: 15.8667 L12: 5.2966 REMARK 3 L13: 12.2083 L23: 6.2249 REMARK 3 S TENSOR REMARK 3 S11: 0.6395 S12: -0.3466 S13: -0.1102 REMARK 3 S21: 0.1699 S22: -0.3614 S23: -0.1857 REMARK 3 S31: 0.8190 S32: 0.0048 S33: -0.2781 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 44 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1550 -12.5210 -12.1240 REMARK 3 T TENSOR REMARK 3 T11: 0.0381 T22: 0.0421 REMARK 3 T33: 0.0241 T12: -0.0065 REMARK 3 T13: -0.0226 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.5938 L22: 1.4548 REMARK 3 L33: 1.6587 L12: -0.3024 REMARK 3 L13: 0.4283 L23: -0.3760 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.0378 S13: 0.0663 REMARK 3 S21: 0.0605 S22: 0.0134 S23: 0.0332 REMARK 3 S31: -0.0321 S32: -0.0279 S33: -0.0169 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 45 B 48 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6130 -9.8200 -7.9190 REMARK 3 T TENSOR REMARK 3 T11: 0.2318 T22: 0.2124 REMARK 3 T33: 0.0769 T12: -0.0882 REMARK 3 T13: 0.0122 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 60.8097 L22: 24.3191 REMARK 3 L33: 34.2851 L12: 21.4720 REMARK 3 L13: 41.9052 L23: 24.3096 REMARK 3 S TENSOR REMARK 3 S11: -0.5275 S12: 0.1676 S13: 0.8913 REMARK 3 S21: -0.7753 S22: 0.2572 S23: -0.2954 REMARK 3 S31: -0.6969 S32: 0.2383 S33: 0.2703 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 49 B 64 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8190 -22.7160 -15.2800 REMARK 3 T TENSOR REMARK 3 T11: 0.0619 T22: 0.0607 REMARK 3 T33: 0.0388 T12: 0.0163 REMARK 3 T13: -0.0189 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 8.4301 L22: 3.0075 REMARK 3 L33: 5.0110 L12: 1.7669 REMARK 3 L13: 5.0119 L23: 0.7548 REMARK 3 S TENSOR REMARK 3 S11: 0.1847 S12: 0.3484 S13: -0.4003 REMARK 3 S21: -0.2203 S22: 0.0665 S23: -0.1943 REMARK 3 S31: 0.2185 S32: 0.3340 S33: -0.2512 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 65 B 87 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5520 -21.5630 -7.3410 REMARK 3 T TENSOR REMARK 3 T11: 0.0601 T22: 0.0509 REMARK 3 T33: 0.0224 T12: -0.0062 REMARK 3 T13: -0.0130 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 3.8958 L22: 3.4881 REMARK 3 L33: 4.0602 L12: -1.0829 REMARK 3 L13: 2.5012 L23: -0.3104 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: -0.0833 S13: -0.1564 REMARK 3 S21: 0.2775 S22: 0.0758 S23: -0.0617 REMARK 3 S31: 0.1401 S32: -0.0141 S33: -0.0812 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 88 B 117 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8940 -13.1770 -12.8690 REMARK 3 T TENSOR REMARK 3 T11: 0.0402 T22: 0.0963 REMARK 3 T33: 0.0804 T12: -0.0094 REMARK 3 T13: -0.0154 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.3697 L22: 1.7130 REMARK 3 L33: 4.0437 L12: -0.3661 REMARK 3 L13: 0.7472 L23: -0.7671 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: 0.0480 S13: -0.0078 REMARK 3 S21: 0.0102 S22: -0.0373 S23: -0.2865 REMARK 3 S31: 0.0664 S32: 0.2385 S33: 0.0101 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 118 B 127 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3650 -11.7810 4.0570 REMARK 3 T TENSOR REMARK 3 T11: 0.1556 T22: 0.1235 REMARK 3 T33: 0.0436 T12: -0.0124 REMARK 3 T13: -0.0510 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 9.3612 L22: 21.5465 REMARK 3 L33: 28.6194 L12: -12.4886 REMARK 3 L13: 14.4132 L23: -24.8322 REMARK 3 S TENSOR REMARK 3 S11: -0.3103 S12: -0.5467 S13: -0.0753 REMARK 3 S21: 0.6383 S22: 0.2952 S23: -0.0107 REMARK 3 S31: -0.7379 S32: -0.3458 S33: 0.0152 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GFT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23569 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 35.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 50 MM AMMONIUM SULFATE, REMARK 280 0.1 M TRISHCL, PH 6.8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.92400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.61300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.47550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.61300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.92400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.47550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 136 REMARK 465 ASP A 137 REMARK 465 LYS A 138 REMARK 465 ASP A 139 REMARK 465 GLY A 172 REMARK 465 ASP A 173 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 GLU B 133 REMARK 465 PRO B 134 REMARK 465 GLU B 135 REMARK 465 ALA B 136 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 GLU A 143 CG CD OE1 OE2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 THR A 170 OG1 CG2 REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 GLU B 91 CG CD OE1 OE2 REMARK 470 HIS B 127 CG ND1 CD2 CE1 NE2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AUC RELATED DB: PDB REMARK 900 RELATED ID: 2QAC RELATED DB: PDB REMARK 900 RELATED ID: 4GGN RELATED DB: PDB DBREF 4GFT A 137 204 UNP Q8I4W8 Q8I4W8_PLAF7 137 204 DBREF 4GFT B 2 136 PDB 4GFT 4GFT 2 136 SEQADV 4GFT GLY A 136 UNP Q8I4W8 EXPRESSION TAG SEQADV 4GFT SER A 155 UNP Q8I4W8 CYS 155 ENGINEERED MUTATION SEQRES 1 A 69 GLY ASP LYS ASP ASN VAL GLU GLU LEU ILE LYS MET PHE SEQRES 2 A 69 ALA HIS PHE ASP ASN ASN SER THR GLY TYR LEU THR LYS SEQRES 3 A 69 SER GLN MET LYS ASN ILE LEU THR THR TRP GLY ASP ALA SEQRES 4 A 69 LEU THR ASP GLN GLU ALA ILE ASP ALA LEU ASN ALA PHE SEQRES 5 A 69 SER SER GLU ASP ASN ILE ASP TYR LYS LEU PHE CYS GLU SEQRES 6 A 69 ASP ILE LEU GLN SEQRES 1 B 135 PCA VAL GLN LEU GLN GLU SER GLY GLY GLY THR VAL GLN SEQRES 2 B 135 PRO GLY GLY SER LEU LYS LEU SER CYS SER ALA ALA PRO SEQRES 3 B 135 GLU ARG ALA PHE SER ASN TYR ALA MET GLY TRP PHE ARG SEQRES 4 B 135 GLN ALA PRO GLY GLN GLU ARG GLU PHE VAL ALA GLY ILE SEQRES 5 B 135 THR GLY SER GLY ARG SER GLN TYR TYR ALA ASP SER VAL SEQRES 6 B 135 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA MET ASN SEQRES 7 B 135 ALA VAL TYR LEU GLN MET ASN SER VAL LYS ALA GLU ASP SEQRES 8 B 135 THR ALA VAL TYR TYR CYS ALA ALA ARG VAL VAL PRO VAL SEQRES 9 B 135 PHE SER ASP SER THR LYS GLY TYR VAL TYR TRP GLY GLN SEQRES 10 B 135 GLY THR GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS SEQRES 11 B 135 HIS GLU PRO GLU ALA MODRES 4GFT PCA B 2 GLN PYROGLUTAMIC ACID HET PCA B 2 8 HET EDO B 201 4 HET EDO B 202 4 HETNAM PCA PYROGLUTAMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PCA C5 H7 N O3 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *108(H2 O) HELIX 1 1 ASN A 140 ASP A 152 1 13 HELIX 2 2 LYS A 161 THR A 170 1 10 HELIX 3 3 THR A 176 SER A 188 1 13 HELIX 4 4 TYR A 195 LEU A 203 1 9 HELIX 5 5 ALA B 30 TYR B 34 5 5 HELIX 6 6 ASP B 64 LYS B 67 5 4 HELIX 7 7 ASN B 76 MET B 78 5 3 HELIX 8 8 LYS B 89 THR B 93 5 5 HELIX 9 9 SER B 109 TYR B 113 5 5 SHEET 1 A 2 TYR A 158 THR A 160 0 SHEET 2 A 2 ASN A 192 ASP A 194 -1 O ILE A 193 N LEU A 159 SHEET 1 B 4 VAL B 3 SER B 8 0 SHEET 2 B 4 LEU B 19 PRO B 27 -1 O SER B 24 N GLN B 6 SHEET 3 B 4 ALA B 80 MET B 85 -1 O MET B 85 N LEU B 19 SHEET 4 B 4 PHE B 70 ASP B 75 -1 N THR B 71 O GLN B 84 SHEET 1 C 6 GLY B 11 VAL B 13 0 SHEET 2 C 6 THR B 120 VAL B 124 1 O THR B 123 N GLY B 11 SHEET 3 C 6 ALA B 94 ALA B 100 -1 N TYR B 96 O THR B 120 SHEET 4 C 6 MET B 36 GLN B 41 -1 N PHE B 39 O TYR B 97 SHEET 5 C 6 GLU B 48 ILE B 53 -1 O GLU B 48 N ARG B 40 SHEET 6 C 6 GLN B 60 TYR B 62 -1 O TYR B 61 N GLY B 52 SHEET 1 D 4 GLY B 11 VAL B 13 0 SHEET 2 D 4 THR B 120 VAL B 124 1 O THR B 123 N GLY B 11 SHEET 3 D 4 ALA B 94 ALA B 100 -1 N TYR B 96 O THR B 120 SHEET 4 D 4 TYR B 115 TRP B 116 -1 O TYR B 115 N ALA B 100 SSBOND 1 CYS B 23 CYS B 98 1555 1555 2.12 LINK C PCA B 2 N VAL B 3 1555 1555 1.34 SITE 1 AC1 4 ARG B 29 ALA B 30 ASN B 33 HOH B 359 SITE 1 AC2 3 GLN B 41 GLU B 46 ARG B 47 CRYST1 47.848 52.951 73.226 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020900 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013656 0.00000