data_4GGI # _entry.id 4GGI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4GGI RCSB RCSB074153 WWPDB D_1000074153 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2013-05-08 _pdbx_database_PDB_obs_spr.pdb_id 4J6E _pdbx_database_PDB_obs_spr.replace_pdb_id 4GGI _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4GGM wild-type unspecified TargetTrack CSMP-167 . unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 4GGI _pdbx_database_status.recvd_initial_deposition_date 2012-08-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Metzger IV, L.E.' 1 'Lee, J.K.' 2 'Finer-Moore, J.S.' 3 'Raetz, C.R.H.' 4 'Stroud, R.M.' 5 'Center for Structures of Membrane Proteins (CSMP)' 6 # _citation.id primary _citation.title 'LpxI structures reveal how a lipid A precursor is synthesized.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 19 _citation.page_first 1132 _citation.page_last 1138 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23042606 _citation.pdbx_database_id_DOI 10.1038/nsmb.2393 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Metzger, L.E.' 1 primary 'Lee, J.K.' 2 primary 'Finer-Moore, J.S.' 3 primary 'Raetz, C.R.' 4 primary 'Stroud, R.M.' 5 # _cell.entry_id 4GGI _cell.length_a 107.297 _cell.length_b 107.297 _cell.length_c 81.290 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GGI _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'UDP-2,3-diacylglucosamine pyrophosphatase LpxI' 29957.740 1 3.6.1.54 D225A ? ? 2 non-polymer syn ;(2R,3R,4R,5S,6R)-2-{[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)-3-{[(3R)-3-hydroxytetradecanoyl]amino}tetrahydro-2H-pyran-4-yl (3R)-3-hydroxytetradecanoate ; 1018.027 1 ? ? ? ? 3 water nat water 18.015 19 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GHMMRKLGLIAGGGALPVELASHCEAAGRAFAVMRLRSFADPSLDRYPGADVGIGEFGKIFKALRAEGCDVVCFAGNVSR PDFSALMPDARGLKVLPSLIVAARKGDDALLRRVLDEFEKEGFEIEGAHEVMGEMTLPRGRLGKVSPAPEHMADIDKALD VAREIGRLDIGQGAVVCEGLVLAVEAQEGTDAMLRRVADLPEAIRGRAERRLGVLAKAPKPIQETRVALPTIGVATIHRA ARAGLAGIVGEAGRLLVVDREAVIAAADDLGLFVLGVDPQERP ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMMRKLGLIAGGGALPVELASHCEAAGRAFAVMRLRSFADPSLDRYPGADVGIGEFGKIFKALRAEGCDVVCFAGNVSR PDFSALMPDARGLKVLPSLIVAARKGDDALLRRVLDEFEKEGFEIEGAHEVMGEMTLPRGRLGKVSPAPEHMADIDKALD VAREIGRLDIGQGAVVCEGLVLAVEAQEGTDAMLRRVADLPEAIRGRAERRLGVLAKAPKPIQETRVALPTIGVATIHRA ARAGLAGIVGEAGRLLVVDREAVIAAADDLGLFVLGVDPQERP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier CSMP-167 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 MET n 1 5 ARG n 1 6 LYS n 1 7 LEU n 1 8 GLY n 1 9 LEU n 1 10 ILE n 1 11 ALA n 1 12 GLY n 1 13 GLY n 1 14 GLY n 1 15 ALA n 1 16 LEU n 1 17 PRO n 1 18 VAL n 1 19 GLU n 1 20 LEU n 1 21 ALA n 1 22 SER n 1 23 HIS n 1 24 CYS n 1 25 GLU n 1 26 ALA n 1 27 ALA n 1 28 GLY n 1 29 ARG n 1 30 ALA n 1 31 PHE n 1 32 ALA n 1 33 VAL n 1 34 MET n 1 35 ARG n 1 36 LEU n 1 37 ARG n 1 38 SER n 1 39 PHE n 1 40 ALA n 1 41 ASP n 1 42 PRO n 1 43 SER n 1 44 LEU n 1 45 ASP n 1 46 ARG n 1 47 TYR n 1 48 PRO n 1 49 GLY n 1 50 ALA n 1 51 ASP n 1 52 VAL n 1 53 GLY n 1 54 ILE n 1 55 GLY n 1 56 GLU n 1 57 PHE n 1 58 GLY n 1 59 LYS n 1 60 ILE n 1 61 PHE n 1 62 LYS n 1 63 ALA n 1 64 LEU n 1 65 ARG n 1 66 ALA n 1 67 GLU n 1 68 GLY n 1 69 CYS n 1 70 ASP n 1 71 VAL n 1 72 VAL n 1 73 CYS n 1 74 PHE n 1 75 ALA n 1 76 GLY n 1 77 ASN n 1 78 VAL n 1 79 SER n 1 80 ARG n 1 81 PRO n 1 82 ASP n 1 83 PHE n 1 84 SER n 1 85 ALA n 1 86 LEU n 1 87 MET n 1 88 PRO n 1 89 ASP n 1 90 ALA n 1 91 ARG n 1 92 GLY n 1 93 LEU n 1 94 LYS n 1 95 VAL n 1 96 LEU n 1 97 PRO n 1 98 SER n 1 99 LEU n 1 100 ILE n 1 101 VAL n 1 102 ALA n 1 103 ALA n 1 104 ARG n 1 105 LYS n 1 106 GLY n 1 107 ASP n 1 108 ASP n 1 109 ALA n 1 110 LEU n 1 111 LEU n 1 112 ARG n 1 113 ARG n 1 114 VAL n 1 115 LEU n 1 116 ASP n 1 117 GLU n 1 118 PHE n 1 119 GLU n 1 120 LYS n 1 121 GLU n 1 122 GLY n 1 123 PHE n 1 124 GLU n 1 125 ILE n 1 126 GLU n 1 127 GLY n 1 128 ALA n 1 129 HIS n 1 130 GLU n 1 131 VAL n 1 132 MET n 1 133 GLY n 1 134 GLU n 1 135 MET n 1 136 THR n 1 137 LEU n 1 138 PRO n 1 139 ARG n 1 140 GLY n 1 141 ARG n 1 142 LEU n 1 143 GLY n 1 144 LYS n 1 145 VAL n 1 146 SER n 1 147 PRO n 1 148 ALA n 1 149 PRO n 1 150 GLU n 1 151 HIS n 1 152 MET n 1 153 ALA n 1 154 ASP n 1 155 ILE n 1 156 ASP n 1 157 LYS n 1 158 ALA n 1 159 LEU n 1 160 ASP n 1 161 VAL n 1 162 ALA n 1 163 ARG n 1 164 GLU n 1 165 ILE n 1 166 GLY n 1 167 ARG n 1 168 LEU n 1 169 ASP n 1 170 ILE n 1 171 GLY n 1 172 GLN n 1 173 GLY n 1 174 ALA n 1 175 VAL n 1 176 VAL n 1 177 CYS n 1 178 GLU n 1 179 GLY n 1 180 LEU n 1 181 VAL n 1 182 LEU n 1 183 ALA n 1 184 VAL n 1 185 GLU n 1 186 ALA n 1 187 GLN n 1 188 GLU n 1 189 GLY n 1 190 THR n 1 191 ASP n 1 192 ALA n 1 193 MET n 1 194 LEU n 1 195 ARG n 1 196 ARG n 1 197 VAL n 1 198 ALA n 1 199 ASP n 1 200 LEU n 1 201 PRO n 1 202 GLU n 1 203 ALA n 1 204 ILE n 1 205 ARG n 1 206 GLY n 1 207 ARG n 1 208 ALA n 1 209 GLU n 1 210 ARG n 1 211 ARG n 1 212 LEU n 1 213 GLY n 1 214 VAL n 1 215 LEU n 1 216 ALA n 1 217 LYS n 1 218 ALA n 1 219 PRO n 1 220 LYS n 1 221 PRO n 1 222 ILE n 1 223 GLN n 1 224 GLU n 1 225 THR n 1 226 ARG n 1 227 VAL n 1 228 ALA n 1 229 LEU n 1 230 PRO n 1 231 THR n 1 232 ILE n 1 233 GLY n 1 234 VAL n 1 235 ALA n 1 236 THR n 1 237 ILE n 1 238 HIS n 1 239 ARG n 1 240 ALA n 1 241 ALA n 1 242 ARG n 1 243 ALA n 1 244 GLY n 1 245 LEU n 1 246 ALA n 1 247 GLY n 1 248 ILE n 1 249 VAL n 1 250 GLY n 1 251 GLU n 1 252 ALA n 1 253 GLY n 1 254 ARG n 1 255 LEU n 1 256 LEU n 1 257 VAL n 1 258 VAL n 1 259 ASP n 1 260 ARG n 1 261 GLU n 1 262 ALA n 1 263 VAL n 1 264 ILE n 1 265 ALA n 1 266 ALA n 1 267 ALA n 1 268 ASP n 1 269 ASP n 1 270 LEU n 1 271 GLY n 1 272 LEU n 1 273 PHE n 1 274 VAL n 1 275 LEU n 1 276 GLY n 1 277 VAL n 1 278 ASP n 1 279 PRO n 1 280 GLN n 1 281 GLU n 1 282 ARG n 1 283 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene '7330127, CCNA_01987, lpxI' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'NA1000 / CB15N' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caulobacter crescentus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 565050 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'C41(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B8GWR0_CAUCN _struct_ref.pdbx_db_accession B8GWR0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MRKLGLIAGGGALPVELASHCEAAGRAFAVMRLRSFADPSLDRYPGADVGIGEFGKIFKALRAEGCDVVCFAGNVSRPDF SALMPDARGLKVLPSLIVAARKGDDALLRRVLDEFEKEGFEIEGAHEVMGEMTLPRGRLGKVSPAPEHMADIDKALDVAR EIGRLDIGQGAVVCEGLVLAVEAQEGTDAMLRRVADLPEAIRGRAERRLGVLAKAPKPIQETRVDLPTIGVATIHRAARA GLAGIVGEAGRLLVVDREAVIAAADDLGLFVLGVDPQERP ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4GGI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 283 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B8GWR0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 280 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 280 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4GGI GLY A 1 ? UNP B8GWR0 ? ? 'EXPRESSION TAG' -2 1 1 4GGI HIS A 2 ? UNP B8GWR0 ? ? 'EXPRESSION TAG' -1 2 1 4GGI MET A 3 ? UNP B8GWR0 ? ? 'EXPRESSION TAG' 0 3 1 4GGI ALA A 228 ? UNP B8GWR0 ASP 225 'ENGINEERED MUTATION' 225 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UDG non-polymer . ;(2R,3R,4R,5S,6R)-2-{[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)-3-{[(3R)-3-hydroxytetradecanoyl]amino}tetrahydro-2H-pyran-4-yl (3R)-3-hydroxytetradecanoate ; ? 'C43 H77 N3 O20 P2' 1018.027 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4GGI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 45.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '100 mM Tris pH 7.5-9.0, 180-200 mM NaCl, 1.3-1.6 M (NH4)2SO4, and 6% v/v glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-01-01 _diffrn_detector.details DoubleCrystalSi111 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator DoubleCrystalSi111 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.11 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.11 # _reflns.entry_id 4GGI _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 61.2 _reflns.d_resolution_high 2.52 _reflns.number_obs 9603 _reflns.number_all 9788 _reflns.percent_possible_obs 98.11 _reflns.pdbx_Rmerge_I_obs 0.127 _reflns.pdbx_Rsym_value 0.127 _reflns.pdbx_netI_over_sigmaI 32 _reflns.B_iso_Wilson_estimate 52.24 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.52 _reflns_shell.d_res_low 2.65 _reflns_shell.percent_possible_all 95 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1152 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4GGI _refine.ls_number_reflns_obs 9603 _refine.ls_number_reflns_all 9788 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.30 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 61.182 _refine.ls_d_res_high 2.520 _refine.ls_percent_reflns_obs 98.11 _refine.ls_R_factor_obs 0.2381 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2318 _refine.ls_R_factor_R_free 0.2954 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.02 _refine.ls_number_reflns_R_free 962 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 84.0 _refine.aniso_B[1][1] 4.7083 _refine.aniso_B[2][2] 4.7083 _refine.aniso_B[3][3] -9.4166 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.385 _refine.solvent_model_param_bsol 83.580 _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.83 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.61 _refine.pdbx_overall_phase_error 26.42 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1977 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 68 _refine_hist.number_atoms_solvent 19 _refine_hist.number_atoms_total 2064 _refine_hist.d_res_high 2.520 _refine_hist.d_res_low 61.182 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.008 ? ? 2073 ? 'X-RAY DIFFRACTION' f_angle_d 1.525 ? ? 2802 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 21.755 ? ? 786 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.099 ? ? 327 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 365 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.5200 2.6529 1152 0.2966 95.00 0.3448 . . 128 . . 1152 . 'X-RAY DIFFRACTION' . 2.6529 2.8191 1191 0.2930 96.00 0.3521 . . 133 . . 1191 . 'X-RAY DIFFRACTION' . 2.8191 3.0367 1189 0.2482 98.00 0.3271 . . 132 . . 1189 . 'X-RAY DIFFRACTION' . 3.0367 3.3423 1229 0.2246 99.00 0.2599 . . 137 . . 1229 . 'X-RAY DIFFRACTION' . 3.3423 3.8259 1246 0.2172 100.00 0.2856 . . 138 . . 1246 . 'X-RAY DIFFRACTION' . 3.8259 4.8199 1270 0.2086 100.00 0.3166 . . 142 . . 1270 . 'X-RAY DIFFRACTION' . 4.8199 61.2004 1364 0.2348 100.00 0.2725 . . 152 . . 1364 . 'X-RAY DIFFRACTION' # _struct.entry_id 4GGI _struct.title 'Structure of LpxI D225A mutant' _struct.pdbx_descriptor 'UDP-2,3-diacylglucosamine pyrophosphatase LpxI' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GGI _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Structural Genomics, PSI-Biology, Protein Structure Initiative, Center for Structures of Membrane Proteins, CSMP, lipid binding, HYDROLASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'The second part of the biological assembly is generated by two fold crystallographic operator.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 22 ? ALA A 27 ? SER A 19 ALA A 24 1 ? 6 HELX_P HELX_P2 2 GLY A 58 ? GLY A 68 ? GLY A 55 GLY A 65 1 ? 11 HELX_P HELX_P3 3 ASP A 89 ? LEU A 93 ? ASP A 86 LEU A 90 5 ? 5 HELX_P HELX_P4 4 LEU A 96 ? GLY A 106 ? LEU A 93 GLY A 103 1 ? 11 HELX_P HELX_P5 5 ASP A 108 ? GLU A 121 ? ASP A 105 GLU A 118 1 ? 14 HELX_P HELX_P6 6 ALA A 128 ? THR A 136 ? ALA A 125 THR A 133 1 ? 9 HELX_P HELX_P7 7 ALA A 148 ? GLU A 150 ? ALA A 145 GLU A 147 5 ? 3 HELX_P HELX_P8 8 HIS A 151 ? LEU A 168 ? HIS A 148 LEU A 165 1 ? 18 HELX_P HELX_P9 9 GLY A 189 ? LEU A 200 ? GLY A 186 LEU A 197 1 ? 12 HELX_P HELX_P10 10 PRO A 201 ? ARG A 205 ? PRO A 198 ARG A 202 5 ? 5 HELX_P HELX_P11 11 GLY A 233 ? ALA A 243 ? GLY A 230 ALA A 240 1 ? 11 HELX_P HELX_P12 12 ASP A 259 ? GLY A 271 ? ASP A 256 GLY A 268 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 6 A . ? LYS 3 A LEU 7 A ? LEU 4 A 1 -4.14 2 ARG 29 A . ? ARG 26 A ALA 30 A ? ALA 27 A 1 -29.78 3 PRO 219 A . ? PRO 216 A LYS 220 A ? LYS 217 A 1 26.02 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 49 ? VAL A 52 ? GLY A 46 VAL A 49 A 2 VAL A 33 ? LEU A 36 ? VAL A 30 LEU A 33 A 3 GLY A 8 ? ALA A 11 ? GLY A 5 ALA A 8 A 4 VAL A 72 ? ALA A 75 ? VAL A 69 ALA A 72 B 1 GLY A 140 ? ARG A 141 ? GLY A 137 ARG A 138 B 2 PHE A 273 ? VAL A 277 ? PHE A 270 VAL A 274 B 3 GLY A 247 ? GLU A 251 ? GLY A 244 GLU A 248 B 4 VAL A 214 ? LYS A 217 ? VAL A 211 LYS A 214 B 5 GLY A 173 ? CYS A 177 ? GLY A 170 CYS A 174 B 6 LEU A 180 ? VAL A 184 ? LEU A 177 VAL A 181 C 1 THR A 231 ? ILE A 232 ? THR A 228 ILE A 229 C 2 LEU A 256 ? VAL A 257 ? LEU A 253 VAL A 254 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 52 ? O VAL A 49 N ARG A 35 ? N ARG A 32 A 2 3 O MET A 34 ? O MET A 31 N LEU A 9 ? N LEU A 6 A 3 4 N ILE A 10 ? N ILE A 7 O CYS A 73 ? O CYS A 70 B 1 2 N GLY A 140 ? N GLY A 137 O GLY A 276 ? O GLY A 273 B 2 3 O VAL A 277 ? O VAL A 274 N GLY A 250 ? N GLY A 247 B 3 4 O VAL A 249 ? O VAL A 246 N LEU A 215 ? N LEU A 212 B 4 5 O ALA A 216 ? O ALA A 213 N ALA A 174 ? N ALA A 171 B 5 6 N VAL A 175 ? N VAL A 172 O LEU A 182 ? O LEU A 179 C 1 2 N ILE A 232 ? N ILE A 229 O LEU A 256 ? O LEU A 253 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 25 _struct_site.details 'BINDING SITE FOR RESIDUE UDG A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 25 GLY A 13 ? GLY A 10 . ? 1_555 ? 2 AC1 25 ALA A 15 ? ALA A 12 . ? 1_555 ? 3 AC1 25 LEU A 16 ? LEU A 13 . ? 1_555 ? 4 AC1 25 ILE A 54 ? ILE A 51 . ? 1_555 ? 5 AC1 25 ILE A 60 ? ILE A 57 . ? 1_555 ? 6 AC1 25 PHE A 74 ? PHE A 71 . ? 1_555 ? 7 AC1 25 GLY A 76 ? GLY A 73 . ? 1_555 ? 8 AC1 25 ASN A 77 ? ASN A 74 . ? 1_555 ? 9 AC1 25 VAL A 78 ? VAL A 75 . ? 1_555 ? 10 AC1 25 ASP A 107 ? ASP A 104 . ? 1_555 ? 11 AC1 25 LEU A 111 ? LEU A 108 . ? 1_555 ? 12 AC1 25 VAL A 114 ? VAL A 111 . ? 1_555 ? 13 AC1 25 GLN A 172 ? GLN A 169 . ? 1_555 ? 14 AC1 25 GLU A 185 ? GLU A 182 . ? 1_555 ? 15 AC1 25 THR A 190 ? THR A 187 . ? 1_555 ? 16 AC1 25 ASP A 191 ? ASP A 188 . ? 1_555 ? 17 AC1 25 LYS A 217 ? LYS A 214 . ? 1_555 ? 18 AC1 25 LEU A 229 ? LEU A 226 . ? 1_555 ? 19 AC1 25 THR A 231 ? THR A 228 . ? 1_555 ? 20 AC1 25 ILE A 232 ? ILE A 229 . ? 1_555 ? 21 AC1 25 GLY A 233 ? GLY A 230 . ? 1_555 ? 22 AC1 25 VAL A 234 ? VAL A 231 . ? 1_555 ? 23 AC1 25 ALA A 235 ? ALA A 232 . ? 1_555 ? 24 AC1 25 THR A 236 ? THR A 233 . ? 1_555 ? 25 AC1 25 HOH C . ? HOH A 417 . ? 1_555 ? # _database_PDB_matrix.entry_id 4GGI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4GGI _atom_sites.fract_transf_matrix[1][1] 0.009320 _atom_sites.fract_transf_matrix[1][2] 0.005381 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010762 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012302 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 HIS 2 -1 ? ? ? A . n A 1 3 MET 3 0 ? ? ? A . n A 1 4 MET 4 1 1 MET MET A . n A 1 5 ARG 5 2 2 ARG ARG A . n A 1 6 LYS 6 3 3 LYS ALA A . n A 1 7 LEU 7 4 4 LEU LEU A . n A 1 8 GLY 8 5 5 GLY GLY A . n A 1 9 LEU 9 6 6 LEU LEU A . n A 1 10 ILE 10 7 7 ILE ILE A . n A 1 11 ALA 11 8 8 ALA ALA A . n A 1 12 GLY 12 9 9 GLY GLY A . n A 1 13 GLY 13 10 10 GLY GLY A . n A 1 14 GLY 14 11 11 GLY GLY A . n A 1 15 ALA 15 12 12 ALA ALA A . n A 1 16 LEU 16 13 13 LEU LEU A . n A 1 17 PRO 17 14 14 PRO PRO A . n A 1 18 VAL 18 15 15 VAL VAL A . n A 1 19 GLU 19 16 16 GLU GLU A . n A 1 20 LEU 20 17 17 LEU LEU A . n A 1 21 ALA 21 18 18 ALA ALA A . n A 1 22 SER 22 19 19 SER SER A . n A 1 23 HIS 23 20 20 HIS HIS A . n A 1 24 CYS 24 21 21 CYS CYS A . n A 1 25 GLU 25 22 22 GLU GLU A . n A 1 26 ALA 26 23 23 ALA ALA A . n A 1 27 ALA 27 24 24 ALA ALA A . n A 1 28 GLY 28 25 25 GLY GLY A . n A 1 29 ARG 29 26 26 ARG ARG A . n A 1 30 ALA 30 27 27 ALA ALA A . n A 1 31 PHE 31 28 28 PHE PHE A . n A 1 32 ALA 32 29 29 ALA ALA A . n A 1 33 VAL 33 30 30 VAL VAL A . n A 1 34 MET 34 31 31 MET MET A . n A 1 35 ARG 35 32 32 ARG ARG A . n A 1 36 LEU 36 33 33 LEU LEU A . n A 1 37 ARG 37 34 34 ARG ARG A . n A 1 38 SER 38 35 35 SER SER A . n A 1 39 PHE 39 36 36 PHE PHE A . n A 1 40 ALA 40 37 37 ALA ALA A . n A 1 41 ASP 41 38 38 ASP ASP A . n A 1 42 PRO 42 39 39 PRO PRO A . n A 1 43 SER 43 40 40 SER SER A . n A 1 44 LEU 44 41 41 LEU LEU A . n A 1 45 ASP 45 42 42 ASP ASP A . n A 1 46 ARG 46 43 43 ARG ARG A . n A 1 47 TYR 47 44 44 TYR TYR A . n A 1 48 PRO 48 45 45 PRO PRO A . n A 1 49 GLY 49 46 46 GLY GLY A . n A 1 50 ALA 50 47 47 ALA ALA A . n A 1 51 ASP 51 48 48 ASP ASP A . n A 1 52 VAL 52 49 49 VAL VAL A . n A 1 53 GLY 53 50 50 GLY GLY A . n A 1 54 ILE 54 51 51 ILE ILE A . n A 1 55 GLY 55 52 52 GLY GLY A . n A 1 56 GLU 56 53 53 GLU GLU A . n A 1 57 PHE 57 54 54 PHE PHE A . n A 1 58 GLY 58 55 55 GLY GLY A . n A 1 59 LYS 59 56 56 LYS LYS A . n A 1 60 ILE 60 57 57 ILE ILE A . n A 1 61 PHE 61 58 58 PHE PHE A . n A 1 62 LYS 62 59 59 LYS LYS A . n A 1 63 ALA 63 60 60 ALA ALA A . n A 1 64 LEU 64 61 61 LEU LEU A . n A 1 65 ARG 65 62 62 ARG ARG A . n A 1 66 ALA 66 63 63 ALA ALA A . n A 1 67 GLU 67 64 64 GLU GLU A . n A 1 68 GLY 68 65 65 GLY GLY A . n A 1 69 CYS 69 66 66 CYS CYS A . n A 1 70 ASP 70 67 67 ASP ASP A . n A 1 71 VAL 71 68 68 VAL VAL A . n A 1 72 VAL 72 69 69 VAL VAL A . n A 1 73 CYS 73 70 70 CYS CYS A . n A 1 74 PHE 74 71 71 PHE PHE A . n A 1 75 ALA 75 72 72 ALA ALA A . n A 1 76 GLY 76 73 73 GLY GLY A . n A 1 77 ASN 77 74 74 ASN ASN A . n A 1 78 VAL 78 75 75 VAL VAL A . n A 1 79 SER 79 76 76 SER SER A . n A 1 80 ARG 80 77 77 ARG ARG A . n A 1 81 PRO 81 78 78 PRO PRO A . n A 1 82 ASP 82 79 79 ASP ASP A . n A 1 83 PHE 83 80 80 PHE PHE A . n A 1 84 SER 84 81 81 SER SER A . n A 1 85 ALA 85 82 82 ALA ALA A . n A 1 86 LEU 86 83 83 LEU LEU A . n A 1 87 MET 87 84 84 MET MET A . n A 1 88 PRO 88 85 85 PRO PRO A . n A 1 89 ASP 89 86 86 ASP ASP A . n A 1 90 ALA 90 87 87 ALA ALA A . n A 1 91 ARG 91 88 88 ARG ARG A . n A 1 92 GLY 92 89 89 GLY GLY A . n A 1 93 LEU 93 90 90 LEU LEU A . n A 1 94 LYS 94 91 91 LYS LYS A . n A 1 95 VAL 95 92 92 VAL VAL A . n A 1 96 LEU 96 93 93 LEU LEU A . n A 1 97 PRO 97 94 94 PRO PRO A . n A 1 98 SER 98 95 95 SER SER A . n A 1 99 LEU 99 96 96 LEU LEU A . n A 1 100 ILE 100 97 97 ILE ILE A . n A 1 101 VAL 101 98 98 VAL VAL A . n A 1 102 ALA 102 99 99 ALA ALA A . n A 1 103 ALA 103 100 100 ALA ALA A . n A 1 104 ARG 104 101 101 ARG ARG A . n A 1 105 LYS 105 102 102 LYS ALA A . n A 1 106 GLY 106 103 103 GLY GLY A . n A 1 107 ASP 107 104 104 ASP ASP A . n A 1 108 ASP 108 105 105 ASP ASP A . n A 1 109 ALA 109 106 106 ALA ALA A . n A 1 110 LEU 110 107 107 LEU LEU A . n A 1 111 LEU 111 108 108 LEU LEU A . n A 1 112 ARG 112 109 109 ARG ARG A . n A 1 113 ARG 113 110 110 ARG ARG A . n A 1 114 VAL 114 111 111 VAL VAL A . n A 1 115 LEU 115 112 112 LEU LEU A . n A 1 116 ASP 116 113 113 ASP ASP A . n A 1 117 GLU 117 114 114 GLU GLU A . n A 1 118 PHE 118 115 115 PHE PHE A . n A 1 119 GLU 119 116 116 GLU GLU A . n A 1 120 LYS 120 117 117 LYS LYS A . n A 1 121 GLU 121 118 118 GLU GLU A . n A 1 122 GLY 122 119 119 GLY GLY A . n A 1 123 PHE 123 120 120 PHE PHE A . n A 1 124 GLU 124 121 121 GLU GLU A . n A 1 125 ILE 125 122 122 ILE ILE A . n A 1 126 GLU 126 123 123 GLU GLU A . n A 1 127 GLY 127 124 124 GLY GLY A . n A 1 128 ALA 128 125 125 ALA ALA A . n A 1 129 HIS 129 126 126 HIS HIS A . n A 1 130 GLU 130 127 127 GLU GLU A . n A 1 131 VAL 131 128 128 VAL VAL A . n A 1 132 MET 132 129 129 MET MET A . n A 1 133 GLY 133 130 130 GLY GLY A . n A 1 134 GLU 134 131 131 GLU GLU A . n A 1 135 MET 135 132 132 MET MET A . n A 1 136 THR 136 133 133 THR THR A . n A 1 137 LEU 137 134 134 LEU LEU A . n A 1 138 PRO 138 135 135 PRO PRO A . n A 1 139 ARG 139 136 136 ARG ARG A . n A 1 140 GLY 140 137 137 GLY GLY A . n A 1 141 ARG 141 138 138 ARG ARG A . n A 1 142 LEU 142 139 139 LEU LEU A . n A 1 143 GLY 143 140 140 GLY GLY A . n A 1 144 LYS 144 141 141 LYS LYS A . n A 1 145 VAL 145 142 142 VAL VAL A . n A 1 146 SER 146 143 143 SER SER A . n A 1 147 PRO 147 144 144 PRO PRO A . n A 1 148 ALA 148 145 145 ALA ALA A . n A 1 149 PRO 149 146 146 PRO PRO A . n A 1 150 GLU 150 147 147 GLU GLU A . n A 1 151 HIS 151 148 148 HIS HIS A . n A 1 152 MET 152 149 149 MET MET A . n A 1 153 ALA 153 150 150 ALA ALA A . n A 1 154 ASP 154 151 151 ASP ASP A . n A 1 155 ILE 155 152 152 ILE ILE A . n A 1 156 ASP 156 153 153 ASP ASP A . n A 1 157 LYS 157 154 154 LYS LYS A . n A 1 158 ALA 158 155 155 ALA ALA A . n A 1 159 LEU 159 156 156 LEU LEU A . n A 1 160 ASP 160 157 157 ASP ASP A . n A 1 161 VAL 161 158 158 VAL VAL A . n A 1 162 ALA 162 159 159 ALA ALA A . n A 1 163 ARG 163 160 160 ARG ARG A . n A 1 164 GLU 164 161 161 GLU GLU A . n A 1 165 ILE 165 162 162 ILE ILE A . n A 1 166 GLY 166 163 163 GLY GLY A . n A 1 167 ARG 167 164 164 ARG ARG A . n A 1 168 LEU 168 165 165 LEU LEU A . n A 1 169 ASP 169 166 166 ASP ASP A . n A 1 170 ILE 170 167 167 ILE ILE A . n A 1 171 GLY 171 168 168 GLY GLY A . n A 1 172 GLN 172 169 169 GLN GLN A . n A 1 173 GLY 173 170 170 GLY GLY A . n A 1 174 ALA 174 171 171 ALA ALA A . n A 1 175 VAL 175 172 172 VAL VAL A . n A 1 176 VAL 176 173 173 VAL VAL A . n A 1 177 CYS 177 174 174 CYS CYS A . n A 1 178 GLU 178 175 175 GLU GLU A . n A 1 179 GLY 179 176 176 GLY GLY A . n A 1 180 LEU 180 177 177 LEU LEU A . n A 1 181 VAL 181 178 178 VAL VAL A . n A 1 182 LEU 182 179 179 LEU LEU A . n A 1 183 ALA 183 180 180 ALA ALA A . n A 1 184 VAL 184 181 181 VAL VAL A . n A 1 185 GLU 185 182 182 GLU GLU A . n A 1 186 ALA 186 183 183 ALA ALA A . n A 1 187 GLN 187 184 184 GLN GLN A . n A 1 188 GLU 188 185 185 GLU GLU A . n A 1 189 GLY 189 186 186 GLY GLY A . n A 1 190 THR 190 187 187 THR THR A . n A 1 191 ASP 191 188 188 ASP ASP A . n A 1 192 ALA 192 189 189 ALA ALA A . n A 1 193 MET 193 190 190 MET MET A . n A 1 194 LEU 194 191 191 LEU LEU A . n A 1 195 ARG 195 192 192 ARG ARG A . n A 1 196 ARG 196 193 193 ARG ARG A . n A 1 197 VAL 197 194 194 VAL VAL A . n A 1 198 ALA 198 195 195 ALA ALA A . n A 1 199 ASP 199 196 196 ASP ASP A . n A 1 200 LEU 200 197 197 LEU LEU A . n A 1 201 PRO 201 198 198 PRO PRO A . n A 1 202 GLU 202 199 199 GLU GLU A . n A 1 203 ALA 203 200 200 ALA ALA A . n A 1 204 ILE 204 201 201 ILE ILE A . n A 1 205 ARG 205 202 202 ARG ARG A . n A 1 206 GLY 206 203 203 GLY GLY A . n A 1 207 ARG 207 204 204 ARG ARG A . n A 1 208 ALA 208 205 205 ALA ALA A . n A 1 209 GLU 209 206 206 GLU GLU A . n A 1 210 ARG 210 207 207 ARG ARG A . n A 1 211 ARG 211 208 208 ARG ARG A . n A 1 212 LEU 212 209 209 LEU LEU A . n A 1 213 GLY 213 210 210 GLY GLY A . n A 1 214 VAL 214 211 211 VAL VAL A . n A 1 215 LEU 215 212 212 LEU LEU A . n A 1 216 ALA 216 213 213 ALA ALA A . n A 1 217 LYS 217 214 214 LYS LYS A . n A 1 218 ALA 218 215 215 ALA ALA A . n A 1 219 PRO 219 216 216 PRO PRO A . n A 1 220 LYS 220 217 217 LYS LYS A . n A 1 221 PRO 221 218 218 PRO PRO A . n A 1 222 ILE 222 219 219 ILE ILE A . n A 1 223 GLN 223 220 ? ? ? A . n A 1 224 GLU 224 221 ? ? ? A . n A 1 225 THR 225 222 ? ? ? A . n A 1 226 ARG 226 223 223 ARG ARG A . n A 1 227 VAL 227 224 224 VAL VAL A . n A 1 228 ALA 228 225 225 ALA ASP A . n A 1 229 LEU 229 226 226 LEU LEU A . n A 1 230 PRO 230 227 227 PRO PRO A . n A 1 231 THR 231 228 228 THR THR A . n A 1 232 ILE 232 229 229 ILE ILE A . n A 1 233 GLY 233 230 230 GLY GLY A . n A 1 234 VAL 234 231 231 VAL VAL A . n A 1 235 ALA 235 232 232 ALA ALA A . n A 1 236 THR 236 233 233 THR THR A . n A 1 237 ILE 237 234 234 ILE ILE A . n A 1 238 HIS 238 235 235 HIS HIS A . n A 1 239 ARG 239 236 236 ARG ARG A . n A 1 240 ALA 240 237 237 ALA ALA A . n A 1 241 ALA 241 238 238 ALA ALA A . n A 1 242 ARG 242 239 239 ARG ARG A . n A 1 243 ALA 243 240 240 ALA ALA A . n A 1 244 GLY 244 241 241 GLY GLY A . n A 1 245 LEU 245 242 242 LEU LEU A . n A 1 246 ALA 246 243 243 ALA ALA A . n A 1 247 GLY 247 244 244 GLY GLY A . n A 1 248 ILE 248 245 245 ILE ILE A . n A 1 249 VAL 249 246 246 VAL VAL A . n A 1 250 GLY 250 247 247 GLY GLY A . n A 1 251 GLU 251 248 248 GLU GLU A . n A 1 252 ALA 252 249 249 ALA ALA A . n A 1 253 GLY 253 250 250 GLY GLY A . n A 1 254 ARG 254 251 251 ARG ARG A . n A 1 255 LEU 255 252 252 LEU LEU A . n A 1 256 LEU 256 253 253 LEU LEU A . n A 1 257 VAL 257 254 254 VAL VAL A . n A 1 258 VAL 258 255 255 VAL VAL A . n A 1 259 ASP 259 256 256 ASP ASP A . n A 1 260 ARG 260 257 257 ARG ARG A . n A 1 261 GLU 261 258 258 GLU GLU A . n A 1 262 ALA 262 259 259 ALA ALA A . n A 1 263 VAL 263 260 260 VAL VAL A . n A 1 264 ILE 264 261 261 ILE ILE A . n A 1 265 ALA 265 262 262 ALA ALA A . n A 1 266 ALA 266 263 263 ALA ALA A . n A 1 267 ALA 267 264 264 ALA ALA A . n A 1 268 ASP 268 265 265 ASP ASP A . n A 1 269 ASP 269 266 266 ASP ASP A . n A 1 270 LEU 270 267 267 LEU LEU A . n A 1 271 GLY 271 268 268 GLY GLY A . n A 1 272 LEU 272 269 269 LEU LEU A . n A 1 273 PHE 273 270 270 PHE PHE A . n A 1 274 VAL 274 271 271 VAL VAL A . n A 1 275 LEU 275 272 272 LEU LEU A . n A 1 276 GLY 276 273 273 GLY GLY A . n A 1 277 VAL 277 274 274 VAL VAL A . n A 1 278 ASP 278 275 275 ASP ASP A . n A 1 279 PRO 279 276 276 PRO PRO A . n A 1 280 GLN 280 277 ? ? ? A . n A 1 281 GLU 281 278 ? ? ? A . n A 1 282 ARG 282 279 ? ? ? A . n A 1 283 PRO 283 280 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Center for Structures of Membrane Proteins' _pdbx_SG_project.initial_of_center CSMP # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDG 1 301 1 UDG UDG A . C 3 HOH 1 401 1 HOH HOH A . C 3 HOH 2 402 2 HOH HOH A . C 3 HOH 3 403 3 HOH HOH A . C 3 HOH 4 404 4 HOH HOH A . C 3 HOH 5 405 5 HOH HOH A . C 3 HOH 6 406 6 HOH HOH A . C 3 HOH 7 407 7 HOH HOH A . C 3 HOH 8 408 8 HOH HOH A . C 3 HOH 9 409 9 HOH HOH A . C 3 HOH 10 410 10 HOH HOH A . C 3 HOH 11 411 11 HOH HOH A . C 3 HOH 12 412 12 HOH HOH A . C 3 HOH 13 413 13 HOH HOH A . C 3 HOH 14 414 14 HOH HOH A . C 3 HOH 15 415 15 HOH HOH A . C 3 HOH 16 416 16 HOH HOH A . C 3 HOH 17 417 17 HOH HOH A . C 3 HOH 18 418 18 HOH HOH A . C 3 HOH 19 419 19 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2290 ? 1 MORE -15 ? 1 'SSA (A^2)' 22750 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5000000000 0.8660254038 0.0000000000 -53.6485000000 0.8660254038 -0.5000000000 0.0000000000 92.9219277499 0.0000000000 0.0000000000 -1.0000000000 13.5483333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-03 2 'Structure model' 1 1 2012-11-14 3 'Structure model' 1 2 2012-11-21 4 'Structure model' 1 3 2013-04-17 5 'Structure model' 1 4 2013-05-08 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 5 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' Other # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -3.0641 26.0132 -10.4579 1.0998 1.4714 0.6286 0.3292 -0.1392 -0.2882 0.8748 3.3283 1.5903 -0.7401 -1.1774 1.1161 0.1252 1.8980 -0.4752 -1.7726 -0.4505 -0.0305 0.6904 0.6024 0.2775 'X-RAY DIFFRACTION' 2 ? refined -9.9343 22.1128 -0.5445 0.7797 0.8990 0.9522 0.0519 -0.1767 -0.3624 4.9891 6.0764 5.9873 -4.7385 -3.5317 1.0100 -0.1189 0.7937 -1.6876 -0.8907 -0.0288 1.9201 1.6684 -0.2058 0.1715 'X-RAY DIFFRACTION' 3 ? refined 0.9441 29.1699 7.1750 0.4298 1.1325 0.7856 0.1057 -0.1059 -0.2054 2.7209 3.3447 1.3758 -2.2568 0.1253 0.9030 0.0921 -0.4233 -0.4335 0.0388 0.6279 -1.0161 0.3151 1.1669 -0.6508 'X-RAY DIFFRACTION' 4 ? refined 3.7202 35.0802 -8.9994 0.7942 2.2050 1.3719 -0.1015 0.4363 0.1866 4.9225 5.8284 4.2040 1.2181 -4.3555 0.3135 -0.0998 1.5381 0.6564 -0.8729 -0.4888 -1.2241 0.1713 0.5169 0.5494 'X-RAY DIFFRACTION' 5 ? refined -13.8074 51.1955 -7.5699 0.2883 0.5488 0.1630 -0.2881 0.0434 0.0950 2.1798 2.9029 3.1711 1.5122 -1.1602 -0.1780 -0.3745 0.2997 -0.2270 -0.3954 0.2096 -0.3893 -0.0607 0.5381 0.0911 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resid 1:28)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain A and resid 29:43)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain A and resid 44:120)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain A and resid 121:130)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(chain A and resid 131:276)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BlueIce 'data collection' . ? 1 PHASER 'model building' . ? 2 PHENIX refinement . ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 PHASER phasing . ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 121 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 416 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 34 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OD1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ASP _pdbx_validate_symm_contact.auth_seq_id_2 67 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_555 _pdbx_validate_symm_contact.dist 1.73 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 14 ? ? -45.22 -16.62 2 1 GLU A 16 ? ? -59.53 17.90 3 1 LEU A 17 ? ? -133.62 -38.74 4 1 SER A 19 ? ? -61.83 -80.48 5 1 HIS A 20 ? ? -46.36 -13.05 6 1 ALA A 23 ? ? -77.24 -105.94 7 1 ALA A 24 ? ? -47.40 11.60 8 1 PHE A 28 ? ? -23.27 163.19 9 1 SER A 40 ? ? -59.84 25.15 10 1 LEU A 41 ? ? -161.98 -11.13 11 1 ASP A 42 ? ? -49.28 161.79 12 1 ARG A 43 ? ? -13.64 67.88 13 1 PRO A 45 ? ? -55.14 171.84 14 1 GLU A 53 ? ? -58.90 67.13 15 1 SER A 81 ? ? -28.06 -65.73 16 1 LEU A 83 ? ? -66.72 -159.75 17 1 ASP A 86 ? ? -162.75 115.82 18 1 SER A 95 ? ? -54.87 -3.08 19 1 LEU A 96 ? ? -91.96 -67.73 20 1 GLU A 116 ? ? -39.10 -35.47 21 1 GLU A 118 ? ? -52.19 1.13 22 1 GLU A 123 ? ? 148.64 124.31 23 1 GLU A 131 ? ? -123.27 -89.87 24 1 MET A 132 ? ? -100.88 47.80 25 1 GLU A 147 ? ? -58.86 6.62 26 1 ILE A 167 ? ? -62.75 -83.18 27 1 ALA A 183 ? ? -120.87 -105.48 28 1 LYS A 217 ? ? 71.66 58.92 29 1 VAL A 224 ? ? -141.74 -23.98 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ASP A 42 ? ? ARG A 43 ? ? -148.96 2 1 ARG A 43 ? ? TYR A 44 ? ? 139.43 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 3 ? CG ? A LYS 6 CG 2 1 Y 1 A LYS 3 ? CD ? A LYS 6 CD 3 1 Y 1 A LYS 3 ? CE ? A LYS 6 CE 4 1 Y 1 A LYS 3 ? NZ ? A LYS 6 NZ 5 1 Y 1 A LYS 91 ? CG ? A LYS 94 CG 6 1 Y 1 A LYS 91 ? CD ? A LYS 94 CD 7 1 Y 1 A LYS 91 ? CE ? A LYS 94 CE 8 1 Y 1 A LYS 91 ? NZ ? A LYS 94 NZ 9 1 Y 1 A LYS 102 ? CG ? A LYS 105 CG 10 1 Y 1 A LYS 102 ? CD ? A LYS 105 CD 11 1 Y 1 A LYS 102 ? CE ? A LYS 105 CE 12 1 Y 1 A LYS 102 ? NZ ? A LYS 105 NZ 13 1 Y 1 A GLU 123 ? CG ? A GLU 126 CG 14 1 Y 1 A GLU 123 ? CD ? A GLU 126 CD 15 1 Y 1 A GLU 123 ? OE1 ? A GLU 126 OE1 16 1 Y 1 A GLU 123 ? OE2 ? A GLU 126 OE2 17 1 Y 1 A GLU 127 ? CG ? A GLU 130 CG 18 1 Y 1 A GLU 127 ? CD ? A GLU 130 CD 19 1 Y 1 A GLU 127 ? OE1 ? A GLU 130 OE1 20 1 Y 1 A GLU 127 ? OE2 ? A GLU 130 OE2 21 1 Y 1 A GLU 199 ? CG ? A GLU 202 CG 22 1 Y 1 A GLU 199 ? CD ? A GLU 202 CD 23 1 Y 1 A GLU 199 ? OE1 ? A GLU 202 OE1 24 1 Y 1 A GLU 199 ? OE2 ? A GLU 202 OE2 25 1 Y 1 A ARG 207 ? CG ? A ARG 210 CG 26 1 Y 1 A ARG 207 ? CD ? A ARG 210 CD 27 1 Y 1 A ARG 207 ? NE ? A ARG 210 NE 28 1 Y 1 A ARG 207 ? CZ ? A ARG 210 CZ 29 1 Y 1 A ARG 207 ? NH1 ? A ARG 210 NH1 30 1 Y 1 A ARG 207 ? NH2 ? A ARG 210 NH2 31 1 Y 1 A ARG 257 ? CG ? A ARG 260 CG 32 1 Y 1 A ARG 257 ? CD ? A ARG 260 CD 33 1 Y 1 A ARG 257 ? NE ? A ARG 260 NE 34 1 Y 1 A ARG 257 ? CZ ? A ARG 260 CZ 35 1 Y 1 A ARG 257 ? NH1 ? A ARG 260 NH1 36 1 Y 1 A ARG 257 ? NH2 ? A ARG 260 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A HIS -1 ? A HIS 2 3 1 Y 1 A MET 0 ? A MET 3 4 1 Y 1 A GLN 220 ? A GLN 223 5 1 Y 1 A GLU 221 ? A GLU 224 6 1 Y 1 A THR 222 ? A THR 225 7 1 Y 1 A GLN 277 ? A GLN 280 8 1 Y 1 A GLU 278 ? A GLU 281 9 1 Y 1 A ARG 279 ? A ARG 282 10 1 Y 1 A PRO 280 ? A PRO 283 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(2R,3R,4R,5S,6R)-2-{[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)-3-{[(3R)-3-hydroxytetradecanoyl]amino}tetrahydro-2H-pyran-4-yl (3R)-3-hydroxytetradecanoate ; UDG 3 water HOH #