HEADER HYDROLASE 06-AUG-12 4GGM TITLE STRUCTURE OF LPXI COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-2,3-DIACYLGLUCOSAMINE PYROPHOSPHATASE LPXI; COMPND 3 CHAIN: X; COMPND 4 EC: 3.6.1.54; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER CRESCENTUS; SOURCE 3 ORGANISM_TAXID: 565050; SOURCE 4 STRAIN: NA1000 / CB15N; SOURCE 5 GENE: 7330127, CCNA_01987, LPXI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 CENTER FOR STRUCTURES OF MEMBRANE PROTEINS, CSMP, LIPID BINDING, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.E.METZGER IV,J.K.LEE,J.S.FINER-MOORE,C.R.H.RAETZ,R.M.STROUD,CENTER AUTHOR 2 FOR STRUCTURES OF MEMBRANE PROTEINS (CSMP) REVDAT 5 25-OCT-17 4GGM 1 REMARK REVDAT 4 17-APR-13 4GGM 1 REMARK REVDAT 3 21-NOV-12 4GGM 1 JRNL REVDAT 2 14-NOV-12 4GGM 1 JRNL REVDAT 1 03-OCT-12 4GGM 0 JRNL AUTH L.E.METZGER,J.K.LEE,J.S.FINER-MOORE,C.R.RAETZ,R.M.STROUD JRNL TITL LPXI STRUCTURES REVEAL HOW A LIPID A PRECURSOR IS JRNL TITL 2 SYNTHESIZED. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 1132 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 23042606 JRNL DOI 10.1038/NSMB.2393 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 11932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5187 - 4.5976 0.99 3008 138 0.1996 0.2269 REMARK 3 2 4.5976 - 3.6498 1.00 2822 146 0.1839 0.2670 REMARK 3 3 3.6498 - 3.1886 1.00 2771 149 0.2599 0.3176 REMARK 3 4 3.1886 - 2.8971 1.00 2760 138 0.3300 0.4480 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 58.22 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.63720 REMARK 3 B22 (A**2) : 15.63720 REMARK 3 B33 (A**2) : -31.27440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2167 REMARK 3 ANGLE : 1.312 2915 REMARK 3 CHIRALITY : 0.079 335 REMARK 3 PLANARITY : 0.005 379 REMARK 3 DIHEDRAL : 19.062 854 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 19.5091 -34.0188 22.8347 REMARK 3 T TENSOR REMARK 3 T11: 0.5872 T22: 0.6146 REMARK 3 T33: 0.6129 T12: -0.0947 REMARK 3 T13: 0.0256 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 1.3720 L22: 0.3138 REMARK 3 L33: 3.5262 L12: -0.3719 REMARK 3 L13: 1.2975 L23: 0.3656 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: 0.0875 S13: -0.1730 REMARK 3 S21: 0.0677 S22: -0.1084 S23: 0.0847 REMARK 3 S31: 0.0850 S32: -0.3108 S33: 0.1508 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GGM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074157. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11 REMARK 200 MONOCHROMATOR : DOUBLECRYSTALSI111 REMARK 200 OPTICS : DOUBLE CRYSTALS SI111 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11932 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 5.7, 3-7% W/V PEG 6000, REMARK 280 2.5% V/V GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.14300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 37.14300 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 182.32200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.14300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 91.16100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.14300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 273.48300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.14300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 273.48300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.14300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 91.16100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 37.14300 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 37.14300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 182.32200 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 37.14300 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 37.14300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 182.32200 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 37.14300 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 273.48300 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 37.14300 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 91.16100 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 37.14300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 91.16100 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 37.14300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 273.48300 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 37.14300 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 37.14300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 182.32200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOCHEMICAL, ANALYTICAL, AND MASS SPEC DATA SUGGESTS DIMER, REMARK 300 WHICH IS NOTED IN THE MANUSCRIPT, BUT IT CAN ALSO BE MONOMER BASED REMARK 300 ON CRYSTALLOGRAPHIC RESULTS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -37.14300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 91.16100 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY X -2 REMARK 465 HIS X -1 REMARK 465 MSE X 0 REMARK 465 GLU X 278 REMARK 465 ARG X 279 REMARK 465 PRO X 280 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG X 223 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU X 221 CD GLU X 221 OE2 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER X 35 -4.65 74.23 REMARK 500 MSE X 84 74.35 -114.68 REMARK 500 ALA X 150 -71.33 -34.85 REMARK 500 ILE X 167 -93.28 -106.18 REMARK 500 ALA X 183 100.61 -169.95 REMARK 500 GLN X 184 -5.62 79.38 REMARK 500 GLU X 206 -73.54 -58.81 REMARK 500 ARG X 251 37.20 -93.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH X 405 O REMARK 620 2 HOH X 404 O 102.3 REMARK 620 3 HOH X 407 O 81.3 91.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LP5 X 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GGI RELATED DB: PDB REMARK 900 D225A MUTANT REMARK 900 RELATED ID: CSMP-166 RELATED DB: TARGETTRACK DBREF 4GGM X 1 280 UNP B8GWR0 B8GWR0_CAUCN 1 280 SEQADV 4GGM GLY X -2 UNP B8GWR0 EXPRESSION TAG SEQADV 4GGM HIS X -1 UNP B8GWR0 EXPRESSION TAG SEQADV 4GGM MSE X 0 UNP B8GWR0 EXPRESSION TAG SEQRES 1 X 283 GLY HIS MSE MSE ARG LYS LEU GLY LEU ILE ALA GLY GLY SEQRES 2 X 283 GLY ALA LEU PRO VAL GLU LEU ALA SER HIS CYS GLU ALA SEQRES 3 X 283 ALA GLY ARG ALA PHE ALA VAL MSE ARG LEU ARG SER PHE SEQRES 4 X 283 ALA ASP PRO SER LEU ASP ARG TYR PRO GLY ALA ASP VAL SEQRES 5 X 283 GLY ILE GLY GLU PHE GLY LYS ILE PHE LYS ALA LEU ARG SEQRES 6 X 283 ALA GLU GLY CYS ASP VAL VAL CYS PHE ALA GLY ASN VAL SEQRES 7 X 283 SER ARG PRO ASP PHE SER ALA LEU MSE PRO ASP ALA ARG SEQRES 8 X 283 GLY LEU LYS VAL LEU PRO SER LEU ILE VAL ALA ALA ARG SEQRES 9 X 283 LYS GLY ASP ASP ALA LEU LEU ARG ARG VAL LEU ASP GLU SEQRES 10 X 283 PHE GLU LYS GLU GLY PHE GLU ILE GLU GLY ALA HIS GLU SEQRES 11 X 283 VAL MSE GLY GLU MSE THR LEU PRO ARG GLY ARG LEU GLY SEQRES 12 X 283 LYS VAL SER PRO ALA PRO GLU HIS MSE ALA ASP ILE ASP SEQRES 13 X 283 LYS ALA LEU ASP VAL ALA ARG GLU ILE GLY ARG LEU ASP SEQRES 14 X 283 ILE GLY GLN GLY ALA VAL VAL CYS GLU GLY LEU VAL LEU SEQRES 15 X 283 ALA VAL GLU ALA GLN GLU GLY THR ASP ALA MSE LEU ARG SEQRES 16 X 283 ARG VAL ALA ASP LEU PRO GLU ALA ILE ARG GLY ARG ALA SEQRES 17 X 283 GLU ARG ARG LEU GLY VAL LEU ALA LYS ALA PRO LYS PRO SEQRES 18 X 283 ILE GLN GLU THR ARG VAL ASP LEU PRO THR ILE GLY VAL SEQRES 19 X 283 ALA THR ILE HIS ARG ALA ALA ARG ALA GLY LEU ALA GLY SEQRES 20 X 283 ILE VAL GLY GLU ALA GLY ARG LEU LEU VAL VAL ASP ARG SEQRES 21 X 283 GLU ALA VAL ILE ALA ALA ALA ASP ASP LEU GLY LEU PHE SEQRES 22 X 283 VAL LEU GLY VAL ASP PRO GLN GLU ARG PRO MODRES 4GGM MSE X 1 MET SELENOMETHIONINE MODRES 4GGM MSE X 31 MET SELENOMETHIONINE MODRES 4GGM MSE X 84 MET SELENOMETHIONINE MODRES 4GGM MSE X 129 MET SELENOMETHIONINE MODRES 4GGM MSE X 132 MET SELENOMETHIONINE MODRES 4GGM MSE X 149 MET SELENOMETHIONINE MODRES 4GGM MSE X 190 MET SELENOMETHIONINE HET MSE X 1 8 HET MSE X 31 8 HET MSE X 84 8 HET MSE X 129 8 HET MSE X 132 8 HET MSE X 149 8 HET MSE X 190 8 HET MG X 301 1 HET LP5 X 302 96 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM LP5 (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5- HETNAM 2 LP5 ((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY) HETNAM 3 LP5 TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 LP5 C34 H66 N O12 P FORMUL 4 HOH *7(H2 O) HELIX 1 1 ALA X 12 ALA X 24 1 13 HELIX 2 2 ASP X 38 ASP X 42 5 5 HELIX 3 3 GLU X 53 GLU X 64 1 12 HELIX 4 4 VAL X 92 ARG X 101 1 10 HELIX 5 5 GLY X 103 GLY X 119 1 17 HELIX 6 6 GLY X 124 GLU X 131 1 8 HELIX 7 7 ALA X 145 LEU X 165 1 21 HELIX 8 8 GLY X 186 ASP X 196 1 11 HELIX 9 9 PRO X 198 ARG X 202 5 5 HELIX 10 10 GLY X 230 ALA X 240 1 11 HELIX 11 11 ASP X 256 GLY X 268 1 13 SHEET 1 A 5 GLY X 46 VAL X 49 0 SHEET 2 A 5 PHE X 28 LEU X 33 1 N ARG X 32 O ALA X 47 SHEET 3 A 5 LEU X 4 ALA X 8 1 N LEU X 6 O MSE X 31 SHEET 4 A 5 VAL X 68 ALA X 72 1 O CYS X 70 N ILE X 7 SHEET 5 A 5 GLU X 121 GLU X 123 1 O GLU X 123 N VAL X 69 SHEET 1 B 6 GLY X 137 ARG X 138 0 SHEET 2 B 6 PHE X 270 VAL X 274 -1 O GLY X 273 N GLY X 137 SHEET 3 B 6 GLY X 244 GLU X 248 1 N ILE X 245 O LEU X 272 SHEET 4 B 6 VAL X 211 LYS X 214 1 N LEU X 212 O VAL X 246 SHEET 5 B 6 GLY X 170 CYS X 174 -1 N VAL X 173 O VAL X 211 SHEET 6 B 6 LEU X 177 VAL X 181 -1 O LEU X 179 N VAL X 172 SHEET 1 C 2 THR X 228 ILE X 229 0 SHEET 2 C 2 LEU X 253 VAL X 254 1 O LEU X 253 N ILE X 229 LINK C MSE X 1 N ARG X 2 1555 1555 1.33 LINK C VAL X 30 N MSE X 31 1555 1555 1.33 LINK C MSE X 31 N ARG X 32 1555 1555 1.33 LINK C VAL X 128 N MSE X 129 1555 1555 1.33 LINK C MSE X 129 N GLY X 130 1555 1555 1.33 LINK C GLU X 131 N MSE X 132 1555 1555 1.33 LINK C MSE X 132 N THR X 133 1555 1555 1.32 LINK C HIS X 148 N MSE X 149 1555 1555 1.33 LINK C MSE X 149 N ALA X 150 1555 1555 1.33 LINK C ALA X 189 N MSE X 190 1555 1555 1.33 LINK C MSE X 190 N LEU X 191 1555 1555 1.33 LINK MG MG X 301 O HOH X 405 1555 1555 2.66 LINK MG MG X 301 O HOH X 404 1555 1555 2.70 LINK MG MG X 301 O HOH X 407 1555 1555 2.75 LINK C LEU X 83 N MSE X 84 1555 1555 1.33 LINK C MSE X 84 N PRO X 85 1555 1555 1.34 CISPEP 1 ILE X 51 GLY X 52 0 -2.38 CISPEP 2 ARG X 88 GLY X 89 0 21.92 CISPEP 3 GLU X 118 GLY X 119 0 16.80 SITE 1 AC1 4 GLY X 124 HOH X 404 HOH X 405 HOH X 407 SITE 1 AC2 14 GLY X 50 ILE X 51 GLU X 53 PHE X 71 SITE 2 AC2 14 GLY X 73 VAL X 75 SER X 76 ARG X 77 SITE 3 AC2 14 LEU X 96 ASP X 105 LEU X 108 VAL X 111 SITE 4 AC2 14 HOH X 402 HOH X 404 CRYST1 74.286 74.286 364.644 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013461 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002742 0.00000 HETATM 1 N MSE X 1 28.524 -43.298 20.696 1.00 92.93 N ANISOU 1 N MSE X 1 12108 11403 11797 -325 -69 19 N HETATM 2 CA MSE X 1 27.574 -42.369 20.081 1.00 94.01 C ANISOU 2 CA MSE X 1 12127 11628 11963 -442 -9 47 C HETATM 3 C MSE X 1 27.803 -42.230 18.587 1.00 99.80 C ANISOU 3 C MSE X 1 12746 12535 12639 -356 -31 -28 C HETATM 4 O MSE X 1 28.829 -41.685 18.164 1.00 93.72 O ANISOU 4 O MSE X 1 11868 11952 11789 -270 -27 -18 O HETATM 5 CB MSE X 1 27.674 -40.983 20.723 1.00 93.31 C ANISOU 5 CB MSE X 1 11953 11626 11876 -518 62 160 C HETATM 6 CG MSE X 1 26.523 -40.026 20.372 1.00 98.89 C ANISOU 6 CG MSE X 1 12581 12378 12614 -634 109 193 C HETATM 7 SE MSE X 1 24.863 -40.175 21.452 1.00143.95 SE ANISOU 7 SE MSE X 1 18361 17930 18402 -800 150 228 SE HETATM 8 CE MSE X 1 24.245 -41.945 20.877 1.00197.94 C ANISOU 8 CE MSE X 1 25310 24626 25271 -819 87 120 C